morexGenes - Barley RNA-seq Database

Contig contig_48126
Source Contig contig_48126
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48126 (8722 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_48126

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63920	5	3577 bp	MLOC_63920.1	Available	Available	LOC_Os01g52640.3, FRAME:-1, EVALUE:0.0, 13101.m05510 protein suppressor of phythchrome A, putative, expressed
CDS Structure of MLOC_63920

Contig Sequence (8722 bp)

>contig_48126 8722 assembly3_WGSMorex_rbca.fasta
TCACTAAAAAAGTTACGTACACGTTCACGTAGATATTTGTTACAACCGGTGTTTGACTTT
TGCTACCACGTACCATCAGATTCGTTTTTTGCTACGATCACATAGATATTTTTTTGCTAC
AAATTTTGTTTTTTTTTACAACCGTTAAAAAAGTTGCTGCATCATGGTAAATTTTATTGC
ATCGAAAGAAAAAAATATTGCATGAAGATCCAATGATGTAGACGCGCGGGGATTTTGATG
TGGATCGTGGCGGCCCCCGCGGGCGGCCGGCCGAAAGTTTCGGCCGGGCACAGAGCACTC
CCACTCCCTTCTTAAACTAATATAAAAACGTTTAGATCACTATTTTAATTATCTAAACAT
TATTATATTAGTTTACAGAGGAAGTATCAATTAGAGTGGACAAATTATTACACTTTTATA
GATTAGGGACAAAAAAATTCATTTTAGGCGGACCGCTCGGGAAAGGTAGCAAGCAGCCGG
CCGCTCGGAACAACTTAAAAGATGACTAATCAGAACTTCTACGCTTAAAACGTTGCTATA
ACTGCAACAGAAGATTTCTCAACTCTTCGGAAGAAAAAAATGAGAACATCAAGCAACCAA
GGGACTACTGCAACAACCAAAGGCCAGCATTAGCCAAAGACTCGGATTGATTGCCTATAC
AAGTATACCTCAAACCAATGATGTACAAAACCCTTGGGCCACCCCCAACATCTCAAATAT
CTTCACTATTTATGCTACGTTTGCTATGACGCTAACCTGTAATCCTACGCTAACTCTCGA
TATAGCTAACACTACCACCCTACCAGTAGTTCCCAACTCTGGGGTACCCCTATTCCCACC
TCTGCCTTGAAGGGATTATAAAATAGCAAGACATGCACATTCCCCTGATAACAAGTCACT
GAAGTCGGTCCATTTCTACTCGAAACCAGGCAGCACCCTCGCCCTTCGGCACAGGGTCAG
TCCATTTCTAACACCTTAATGTTCCCACTGGAGTTAGCAGAAAGAAGTGTCGAAGACTGC
CCCCTCCAACACACGCACGAAATGAACTGCGATTGATCATCGATCTCCTGGCCTGAAATT
GGGTCTGTGACGTTGAACTTATACGCCAAGACTGGCATTGGAAATGCTTTGTGGTAGACG
AAAACCTGATGAAAAGTGTGAAGGACGGAAAGTTAGACATTTTAATTGCTACGAAACCAA
GAGAAAGAAAAACTACAGACATGCATGAGATTACAGAAGTCAAAATAATTAATATTGTGC
GCTTTATGACTAGAGTTTCCACATAAACCTCATTTTTGGGCACTGGCATGTTAATCTCCT
CTATGTTAGGGTAGGGAGTGTTCCTTCTACCACCAATTTGGCAAATATTTGATGTTCTAT
ATTTTAGATTGCTGACCAATCTTGCCACATAATGGCAAATATGCTTGTCATACGTACAAT
ATGCAGCTCAGAAATATGCAACATTCTTATCTCCCTTCAGCCAGAAGGCAGAACATGTTT
GCATTAATGTTTCCCTTAAAATTTGTTTTTTATTTGTCTCCACATGAAGGTGTAGAATGA
CAGCCAGAAGGCAGAACATGTTTGCATTAATGTTTCCCTTAAAATTTGTTTTTTATTTGT
CTCCACATGAAGGTGTAGAATGATAAGGATAGGTCCAAGAGGGAAGTGGAATCATTGGTG
TATTCTTAAGCAGACTGGGAGTGTAAGCACAGTTCTTATGCACAAACACTCTTTATTTGT
CCAACAGGGAATCAATCCAGACCAGGTTAGAGTGCGCATTACACGCCCTATCCTTGAGCT
AAAGGTTGGTTCTAGAACTGTATCTTCAGAATTCAGCAAAAAAAATAAAAAATGGCGTGA
ACATAGAATGCATACCTCATTTGTTTCTGACCCAGTAGCAATGTACCCATCAGAAATGGA
AAGGCCAACAAAATTCTGCTCAACAGGAATATGTACATTAGTCATACAGCAAAGGACGGT
TTCCTTTAAGCCAGAAGCAATTCAAAAGTATATAAAATAACAGAAATGAGGTGGATCTAA
TCTCAAATGTCAAAATATACTACATAAAGAAACAATATTTAAAGAAAAGACCTAATTGTG
GGCATACAGCTGTAACTAATATGCATGAAATAAGGTAAACATGCATGATTCAAGGCCACA
AAAATCAAACTACGAGTTGATAATGGCTGTACTTGATTATAATCATTTCTGGAACAATAC
CCTGAGAAGAGAACAAGTATGTGCAAGTACAGCTAGAACAAAAATCGACGCATGATATCT
AACCTTTGTATTTGTATGGCCTGTAAAAGTCTGAATTGGATTGTCAATTACTCTTGCTTG
ATTCATGGACAAGTCCCAAAGCTTCAACGAGTTGTCAGTGGAACCAGATACGATGGTTGA
TGCATCTACATACTTGACATAGCTTACAGTCTTTGTGTGGCCAACTAGTGTACAATAAGG
AGCTCGTACGTTGCGAAGATCATAGCAGTAAATTTTGTGATCTGCAGATCCGATTGCAAT
GGAGCGAGCGGAATCAGGTTGAAATTGCACTGAGCAGACATTTGCCCTTGTTCTGATAGT
GCCAACACTCCCAGCCTGCAGAGTTCATAGAAAGATATTACTGTAATGTACGGAAAAAAT
TGTTGCCATCGCATGCAAGCTCGATAACCCCACATTATCATAATTCAAAAGCTGACATAC
AGCAGGTGCAAGAATAGAATTGCCTGATTCATACTCCACAGCTTCACAGTACCATCATCG
CTCCCACTAACTAATTTGGTTGGGTCTGCAAGTGAGAAGTCTACTGACCACACACGCCTC
TCATGCTCCCTCATTTCGACGAAAACTTGGCTCCTAGTAACATCCCAAACCTGAAAAAGA
GTGATATAGTCCTCATAATGTGGTTTCTATAATGATCATTTTCCACTTCAAATTGAAAAA
TAATAATTCCCCTAAGGAGCTTACCTGTACGAGACCATCAAAGTCACTAGATGCTATATG
ACTCTTCATGTAACTGTTCCAGCTAATACAACTTAATTTCGATTTATTAGACATCTCAAC
CACAGGATAGTGAATATCACGGTGTTCATTTACGATCATATTATATTCAAAGACTTTTAT
CTTCTTATTTACACCAGCAGTTGCGAAAAACTCCTTATCCCGGTCAAAGCCTACAGAGCA
TACTAAATTTGATGAGTTCAGCAGATCGCATTGCTTCAGTTCCGCCCGAACTTTCAACTG
GCTGAATGACAAGTACCTGCACAATCCTTCAAGAAAAGAGTTCATCCAACCTCTATGTCT
TCTACCAGAATGCCCTTCTAAAGCAAAATCATCTATTGAACTCCCTTCAGTTCCAACAGC
TGACCCAGTAGTGCTCTTGACGACCTGATCGCGACTACTTAGTGGATTGCCAACTTGCCT
TGCCAACTTGGATCTTGTTTGAAAATATGCTGTTTCTAGTTTTTTGAAGTTTTTCATTAA
CCTTGAGCTTTTTGACAGCACACTTTCCTGAATTAGCACAGATGATGGCACTGTTCTGGA
ACATTCTTCCAGACTATGACTGTGTTCCTCCATATCAACAGCGTGCAGTTCAGGTCTGAA
ACGTTTTCTGGATCCACAGTCACTCTGATCTTCAACAGTTCCAGAGGAGACCTCTTTATC
CAACTCAACTGAGAAATTTCCACATTGACCGAGGGCTGACTGCTGGTGAAGTACCTCATT
GATATCAGAAGAGAGAAAGGCGACGGTGTCCTGCAAATTGTCTGCTACATCCTGCTTTCT
TTTCTGTAACTGGAGAAGGAAATCCAGCAGCAGTTCTTGTTCTTCTATGTCTTCACGTAA
CCGAAGAGCTGCATCGTGCTCTTCCAAACTATTCCTTGATTGATTAAGGAACTCACTCTG
CAGCACCTCACTGTCAAATAAACAAAAAAGGAAATAAAATCAAGTCATCAACACAGTCAA
ACAAGTGGAGGTACTACCTCATAGAAGGAAAGAAATGGGGAACATATACACTATTTTTTA
AAGTTGAATATTGGTATAGAAAAAAATACCGACTATATTTTCTTAAATAACGTCATCGTA
ACTTCAAAGCAAGATCAGTGAGGACCTGCATGCACGGTCACCTGACTCGGCTTAGCTCTT
GGCTTTAGCTACAGATGTGGCTCCAAGTTTACTTTCTTCACTTTGCTTCGCTAGGTGTTT
TTCTGTTATTTCTTCGTGTTTTTTGGTTTATGTCGTGGCCACTGTGTGTGCTGTTGTACA
CACACACCTTTTTCCCTAACAAAAAAAAGGTATGCTCTTTGCAGTGTATTTCTAGACTAA
AGTACATAAAGCAAATAAGGCCCAGGAAAAAATTAAATAAATTTTAAAAATCAAATCATA
TGCATTGTGCAAAAATGTATCTAGTGGCAAAATTTTGTGCCAAAGCACGCACATTCATGT
TCTATACAAGACAAGAGATGAATAACTAATATAGTAATTATGCTTGTACAAATTTGAATT
GTTTTTCATGTGGGTCACATATGGGCATATTTTAACGTAACTTTTCTTGTATTACAATTT
ACACGTAACTTTGCACAATGCACATGTACAAATATTTTCACAAATTTCAAAAATGTGCAA
GTGCCTTTGTCATAAGTGAGCATGCACGTGTAAACCATTTAGTCATTTACTTACATTCAC
AGACTACTATATGCCCAGAAAATAAATGGTGGTACGTGGTGCATGTCAAAATATAAAAGG
AGATGGTAAAATATTGCAATAGCATGCGAGCAATGACAAACTTTTTAATGCTAATCCACT
TAAGCAATTGTGTATTGAAAAAAAAAATCTTCATAGCACAGTTATACGTGAAGACCTTCA
TAAGAGGCACTATTGATTGAGTCCGATTTCATGGACGAATATTATAGATAGTACATACTC
AATAAACATCGTACAGGTACTGATATTAATTCGAGGAATATCCAGCATATAGATCACTAA
CAAATGTTTGGTTTGGGTGGCCGAGAGGGGGGTGGATCTATTCCGGCGCAGAGGTTAGGT
CACCTGCCAGACTAGTGTTTTTAAAATGCAAACATAAGTAGCTATGATGAAACTGAATTT
GAAAAGAACACCATAAAAGGCCTGCCCATGCAAGTGCACTCACTCTAAAGATGGAACTTC
AATAAGGATTGTTCTACTGAGACTAAGTCCAGCGTCAGTGGGTCATGAATCTGCTTACGT
GAGACAGTTATATGACAGATTTTTTCCTGAAGTCATTACCATCAACACCTGGCAGATCAT
GTACGGAAAACAACCCCATCTATTTTATCATGCAGGAAAAAAAAGTGATGTGAAACAGTT
ATATGACAGCTATTTTTTCTTAAGTCATATTACCATCAACGCCCGGCAGATCATGTAGAC
ATGTTAGGACAATGATGATGATGAATAATTACTAAAGTAGTTTGTGCTACCCAATGTGAA
ACAATCAACCCTGTTTTCAGCGATACTTTTATACAAATTATATGTAAATGACAGACATGA
ACCTCATCTTGGGTCGGGTGTCCGGTACAGGGTGCATCATCAACTGGCAGAAGGATGCTT
CCTTGGGCCACTTGAGCAGCAATTGTGGCGGCAATACGCGGTACCTCAGATTGGCCATTG
CCCGCATCTTCTCCTCCAACGTTTCGAAGCTGCAAAACAACTGCGAGCACGGCCGAAAAG
CATTGGCAATGGAAATCGCGCCCAAAAGCACCAAGAGAATATTCATGTCAAGCAGCAGCG
CACCTCGAACAGGAGCACCCCTAATCTATACACGTCGGAGGCGAAGGTAGCGCCGCCGCC
GCTGTCGTCGGCTTCCTCGGGGCTAGTGTACCAGTTGAGCTCCATCGCGAGCACGCTTTT
GAGCGGGAACCCCTTTTCGCTGCGGTCCTCCCCCGCTCGGCCCGCGCCGTCGCCCTGCCG
CGGAGGCTCGGCGTCGTGGTCGGCGTCCTCGGAGGCGTCGGAGCCGGAGGCGTCGGAGCC
CGAGGCGGACTCGATGAAGGCAACGCGGGCGAAGGGCGGGGACACGACGAAGCAGGACGG
GCGCGCGCTGCCGACGGCGACGCCCTGCGCGTGCGCGTCGGCCACCGCCTCCGCCACCTG
GCGGAAGACGTGCAGGCACTCGGGCGCCTCCACCGCCCGGGCCGGCCGGTCCAGCCACTC
CCGCAGGCTGACCTCTCCTCCCTCCTCCTCCTCCTCCCCCCTCCGCGCCCCTCCGCCACG
GGACACCTCCATGCCCGCCCGCGGCGCTCTACCCCATGGCCGGATCACGTCCGGTTCGCT
GCGGCGGGCGGCTGCACCCGCTGCTCCCGGGACCCCATCCTACGCAACGCAACGCAACAA
ATGGCCCCAGAGCGGCGAGCGGCGAGGAGATAAGGATCTGAGGCCGCGGCAGCGAGCGGA
GGCCAGAGACGAGCGTGTGACTGTGCTTGAGGGGGCGAGGGGCGAGCAGCGAGCCACACA
AACACGCTTTAAAACGGAGACGGAGGGTCCTCCTCCCCTCCTCTCCTCCTTTGCTGCTTT
ATTTCGCCCTCGCCCGCCCCGCCCCGGTAGCCGACTCCCAGCCGCACAAACCCCGTTGCC
TCGAACTGCACACCCCGCTGTTAGTGTTAGTATTAGCTCAACTTGAAGGCAGCCAAGCGA
CCAGCGGCTCCCCTCCCCTCGAACTGCCACCACACCACAGTACAGTGCCCCTGCGCTAGA
CACCAAACCTAACCAGAAAGAGGCAGACGAAACGCAGGGCGCTTCACGCCACCAGAAAGA
TAGAGATATACGTGCCCCCTGCTCCTCCCTCCCCTCCCCTCCCCTCCCATGGTTGCGGCG
TGGTGCCCTTTCCTTCCCCTCAACTGATACGCTTCCAAGAATGATCTGATCTCACTGCAT
CCACCACGCCGTAGCCACAACCGAACCGGAGTAGAAAACAGCGGCCGCTGGCGGACCACG
TCGCCCGCTGCCGATGACATCCCGGGCCCGCCGCGAGGTTAGCACTTGCGCTTCCAAAAG
AAAGGGCGTGAATCTTGCGCCGGCAGTTAAAGTAGTAGCGGCTGTCTAGATAAAAAAAAT
CTGCGGTACGTGGCGCAGGATCGTCGCATGGGCAGATTAGCGCGGCTCGCGACTAATCAA
TGAATGCAACTAACTACTCTATTGGGTGACAAGTCGCTGTCGGGCGGGCCCACGTCATAC
ATTCCGCCAGTCAGCGACCGCCTGCGCTTTACGGGGCCTACGTGGCGCGACGACGGCCGC
GCGTCAAGCGGGGGACTCGAGGCGGCTCATGCAGCGGCCACGCATCCATCCATCCGCACC
GGCGAGGAGTTTTTGCCTTTCGCAGCCTCGGGGTCGTGGCGCGTCGCTGCTGCCTCGCCC
GCCTTGCTGGATGCGGCCGCACAGAGAGGGATTTGCTTACTCCAGTTAATCGCGATCTGA
GCGGATAGTACCAGCCGGAAGTGGTAACCTTGCAGGGTTGGATTAACGTAACCACGATCC
CAATTTTATCCACTTGCTTGAGTCGACGAGTGGACGGCACAATTGTTGTGCCGTATTGTA
TTATCCGAGGCAGGTTGGGGCCGTGTCCATGGCCGGCTTGTCTCGCAAGTCAAACCGACC
CAAGGACCGGTCCCTCGCGCATATGCGGATGGCGCAGCCAGCCTACTCTGCATGCCCGTG
TTCGTTTCTCCTTCGACTGGTCGGTTCAAATTTCAACCACATTGGGTTTGGTCATTTGGT
GGTTCGTTATATTTGAGTGAAGTTTGAAACAAACTTATCTTCTTATGATCCGTTGGAATC
TCTAACCCCTGAAATCGGCACCCCAACTGTCTAATCCCGGACGTCACATATCCTAAGCTC
GTTTCCTTTTTGAAGGCGTCGCCGCAGCTTTCATTGTACGTCGGTTACTTTAGGAAAAAC
TTTGATTCTTGGATCGGACGATGACGGCATTTAGATGTCGTAACCTTCCTGAAAGCGTCG
TCTTGGAGCCCACGATTTGTCGTATGCGACTTCATCTCTTTGCGGTGGCGTGTTCACGGT
TGAAAGCCCCGAGTTGCTCGTGTAGTGATAGGAGTGGTGTTGTTGCGGTCAACGCCTATG
TATCATGTCTTGGGTGTATGCCTGTATTGTGATGACGTGTTTTTGTACCGGGTTGTTGAT
GATCGTTGATTTATATATAAAGCAAGACGGAAGCTTTTTTGGTAACATGGACTGCCAATG
TGGCATGGGGCAAGGCCGGGATCGCTGATTCAATTAGTTTCATGAGTCCCACAAGTTGTG
GTGCGGGACAAAACCGGTTGAGCTAGCTGTCCTTTCCAATTTCTCGAGCCCGGATGGATG
AAAGATAACAACGATTGTTAGAACCTCTAGGTTTCACGGTAGCTTGCCCTTCGCTCGAAG
TACACTTCCGGTGCACTTCTCACTGCTCAACCACTATCGCATGATTTCCCTCATAGCTCT
TCCACCTACTCCTTTGATGAAAGGAGAAGATTATTGGATTGATCCCTCGATTTGGGGGAA
CTTTGCATTCACTCCCTCGGTCTACGCCTCGAGGTCACCGCAACGAGCGACGACCCAATC
CTCTCGTTATTCCCCAAATCGAAGCAACCATTCTTCCTCTCCCCCAACCACTCTTCCCCC
GATTCGATCCATGTTCGGTGTGAGTCAATCCTCCAATTCAAGGTCGTTCCTGCTGCCGGG
AAGTAGTTGTGTCGACGGCACC