morexGenes - Barley RNA-seq Database

Contig contig_48072

Source Contig contig_48072

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_48072 (6645 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_48072

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63880	3	4777 bp	MLOC_63880.1	Available	Available	LOC_Os03g55640.2, FRAME:+3, EVALUE:1e-72, 13103.m06056 protein OsSigP2 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
MLOC_63879	2	1900 bp	AK363763	Available	Available	None

CDS Structure of MLOC_63880

CDS Structure of MLOC_63879

Contig Sequence (6645 bp)

>contig_48072 6645 assembly3_WGSMorex_rbca.fasta
CCCGCGTGCCCCGTGCGTGCGCGGGCTGCCGCGCCCCCCAGGACGCGCTCTCCCGCCCCT
TCTGCCTCTTCGCCTCCTCCCGCCGCGTCGAGCAGCACAATGACGCCGAGGACCACAACC
ACCCCAAGCCCAAGCCCAGGCCCAAGCCTCTCCCGCCCGCCGCCGCTGCCGGTGCCGGCC
GCTCCGCCAAGGCTGTCCCCGTCGCAGCCGGAGGCAGGCAGCTGACCAAGCTCGTCCCCG
CCGATGGGGGCAGCTACTCGCTGTTCGTCTCGCCGTCCGGCTCCACGAAGGCGGATGACC
CGCCCGCGTCGCTGGCCGTGGGGTTGCTGTCGGTGCTCGCCTCCGGGGTGGGTTCCGGCC
CCGGCATCGCCGGCGTGTCCTCGCTGTCGGCGTCGCCGTCGATATCGTCCGGGTTGAACC
CCGCGGCGCTGCTCCCGTTCTTGCAGGCCACAAAGTGGCTTCCGTGTAGCGATATCATCA
CCGGTGCGTCGTCCCGCAGGTCGGTACGCCCTGCAGAGGTGTCGACGGCGCCTGCACATG
TGCCTTCCCGTCGCCCTTCGCCTTCGCCTGTGCCCTCCCCTGCAGTGGCTGCCCCTTCGA
AGGCAGGCGTGATGGCGTTGCTTGGTAGCAGCGGTGCGGCGGCTGCCCCCGCCAAGATGG
GCGTCAAGGCATTGTTTGGTAGTAGCGGCGCGGTGGCTGCCCCTACCCAGGTGGGCAGCG
TGGTGGCGCCATTAGTTGGTACTAGTGGAGTAGCCCCTGGTGCTGCTGGGGTGGTGAGAC
AGAGTAGTGCTGCTCTTGGTGCTGGTTTAGGGTCGAGCAAGAGGACTAGCTGGCTGTCGA
GGTGGGTGAATTCCTGCTCGGATGATGCAAAGACCGTCCTTGCTGCTGTGACTGTACCTC
TGCTCCACAAATCCTATCTAGCTGAGCCGAGGTCCATCCCTTCGAAATCAATGTATCCAA
CATTTGATGTTGGTGACCGGATTCTCGCCGAGAGGGTATAGTTAACTCCCAGCCTTTGAT
GAGTAGCACTTTCCTGTGATGTATGTCTGCTGATGGTGCACACTTGCAATTGCAGGTTTC
ATATATTTTCCGGGAGCCTCAAGTTTTGGACATTGTGATCTTCCGTGCACCTCTAGTCCT
TCAGGTATGACAGCCAGTTTGTCCAATTATTAACCTTTGGTCCATGATGGAATTTGTTAT
AATTTGAAGAACTTTTTTGCAGGCATTGGGCTACAGCTCAAGTGATGTGTTCATCAAGAG
AATTGTGGCCAAGGGCGGGGACATCGTTGAAGTAAGCTTTTATCCGAAGGGTAGTGGCTT
CTATTTGTTCTCATTCCCCCTCTTATTTCTTTCTTTTTGTTGGCATGCGTTCTAACCATT
TGTATTCTCCTTTTTCTGAATAGGTGACTGATGGTCAATTATTAGTTAACGGAGTAGTCC
AAGATGAGGACTTTGTGCTTGAGCCACCCGATTATGAAATGGATCCAGTGGTACGCCATC
TTTGCTTCCTGCCTCGGCACTATTGACCAAATGTTGTAATTTGACATAATCACAAGTTTG
ATCATATCAAGTTTCTATGATTGAAATGTGAACCTGTTATATCGGATGTAAATGCGCTGA
AATATTTGATGCTTAAAATGTTAAATTGGTTGTGTTTTTTAAGTTGATAATATTGGTGGT
TCAGAAGTATGACTCTGATCATAAAGCAAGTACCTCCATTTTCTGAAACGAGTTTACACT
GGGGTATACATATTGATCACTTGTTATTTTCTTTTTCCAGAGTGTGCCTGAAGGCTATGT
GTTTGTGCTGGGGGACAACAGAAACAACAGCTTCGATTCCCATAACTGGTATGCTAAACA
TTTATAGAGGATACCTGCTTGAGTTCTCAAGACTAATTCCCAGGACATGTAAGCTCACAG
TGCTATGTTTTGCCATTGCAGGGGACCGCTTTCCGTGAAGAACATTCTTGGGAGATCTGT
GCTTCGATACTGGCCACCATCGAAAATAACAGATACGATCTATGACCATGATGTGGTTCA
TGACATGGCAATTGCAGGCATCTCCTGAGACACGCAGTTGGTGCGGCAATTTCAAACCGC
CCCATTTTTTATTGGCAGAGCATCACCGATGTTCTCTGCTGCATTTTTTCTTCTCCTCTA
GCTATTTATTTGATTGATGTCGCCTTGCACGTAATGCCTGGCTGACTCTCAGTTTTTCCC
TGCCGTAACAGCAGATGCTTGTTTAGAGGCAACAATTCTTGTACTGTAACCAAAGGTCTG
GCTCGTCTGTCAAATGAGCATCCATGACAGCGCATGGAAATTTTGTTATGTTTGGCAAAA
GGAGAGTCTGTTGATCTGTTCCAGATCATATAATGTATAAGAAGCAGAAAGCATGGTATA
TTGTTCATCCTGTTCCTTGTGGAGAGTTTTCGTTCCCCTTTGAATCCTACATGTTTGTTT
GATGAAGTAAACCATGGGAAATTTTGGAACGTGTCTTGTCTCAAGACGACGTTTTGGCAC
TGTATGCTTCGATGTTGTTGATTGTGATATGTAGCTGTGGTTGTCTTGTAATTGTGAGTT
GTTCGTAAGAAATGAGATGTTGAGACTTGTCAGCTGCTGGTATGATGGCCACCTGGGCAG
GGTACTTGTTTGGCAATACACCTGACAGCGAACCAAACGAGTGATAAATGTGTGCTTCTG
TGCTGTTGATTTTGATCTCGTATTCAAAGAGCCTTTTCTCTTTTGTTATGTTTCGGCACA
AGGAGAGGTGATTGACCTGTTTCAGGTCAATGATGTACACACGTTTCAGGCTATAGAAGG
AAAGCAACAATCTCGGAGGAGGAAATAGTTCACTTGTTGGGCACCTGGGCTCCCTGTTCG
TAAATTCACTTATGTGAGGCGCGCTGCGTTCTCCACCCAGTTATTTGAATAATATTGCTG
AAGAAACCAAAGGCATGGTTCATCATGCTCCTTATTGAGTATTATGGTTCTCTTGTGTGC
CCTGAGGTCTTGAATTGTTATATTTGTATTCGTGGGAATATTATGGTTCTCTTGTGTGCC
CTGAGGTTGTGAATTGTTATATTTGTATTCGTCGGAATCTTGCTGCTGTGAATTTGTCCT
TAAGAAATGAGAAATCTGTGACTGTACAGCTTCTACTATGTAACCTGTTCTCATCCTTGC
CTGCAGAGATAAGAGATATGTGACCATGAGGATTCTCTTTTTTTCTTTTTTCATTCTCAT
AACTGGAAACTGTGTAGTGGTGTCAGCAACCTGGAAATGACATGAAATACCCAGTGTTTT
CGAATGACGAATGGTTAGATTTTTTCAAGAAGAGATGGATTGATAGAAACAGAGGGAACT
CCAAAAGAGGGAGAAGAAAGCATCTTTTGAAAACGTATTTAAATAATTCTTGTATTTGTG
AAAATTGTTCTAAAGAAATAGAAGCCCTAAATTTGGATCCTTGCTAAAAGATCTACGAGG
TTTTACCCTTTTTATATCTCAGAAATTGTAAACTGTGCATTGTCACCTGTCTAATTTTCT
CTTCTAAGATGTGAATGTAATGTTCCTTCGTTTGAAAATTAGAAAAAAAAAATGAGTGTC
ATTTGGTCGACACAAATACAGATACAGGTGTACAATGCTTTGATAATTTGATTTACTCCA
CCGTGGTCCAGATGAGAGTCGGTAACTTAGTCAGGAACAATACAAAACCTCAACCTTGCG
TTACAGACAAACCACATTTGCAGGTACACTTCTGGCCCAGACAATCATACACGAAATTGA
TGTATATGTGCAATTTCCTATCAGCCCCTAACAGTATCAGAAGTAAATAGACAAGGAGAA
ACTGTTACCATTTTACATCCAGTGACAACGGATCAGGCGGCAGAACCAACGACGTGAAGT
CTGCGAAGGAGACGTTCGAAGTCAGGCTGCTCCAAGAAGTAGCGTCCGCTATCTCTAAAG
ATTTCCTCACCTTCTTCACCGATATAGCCTTGAGCCTTCCCTCTTCCTCAACCCTTGCGA
TGACGTCAAGTGTGATTCGCTGGACCACAGGCAAGGTTTTCCACTCTGGAACATCGTCCC
AGATGTCGTCCTCTTCGGTGATGTCCCTCTCGAGCTCCAAACGGAATTTTACCAGGGTCA
TTGACGTCACTCTAGCTTCGAAGAAGTTCATTGTCCTGTTGAATTCATTCTTCTCGTTGA
ACCAAGTCTTTAGGAGTTCTTCAAGCCTCGGCAGTTTTGGACTAATTGAGCAGAACGCAC
ATGCTGAGATCAACCGATCTGACATCTCGTTCACTTCAGCCTGGTCTGATAGTAACTCGA
TCGCGTCATCAGAAGTCAACAAGGGCTTCATGTGGCCCCCAGAGACATTGGTTTCATGTG
CAACTATTGTAACCGATGATCCTACAACCCTCATGTGAAGTAATGGAGCACAGGTTGAGT
GGCTGAGAGGCAATATTTGGCTTAGTCCCCTGTTAGTAGCCAACAAGCTTCCATTTGATA
AAAGGCCTATACTGTGAGGATGGGAAAAGGATGCTCTCAGCGCACCAGTAATCTTTAATG
CAACACCAGCAGCAACAAGTACCCTCTTCAACCCTGTATACGTGGCATTCAACTGCATAT
GAGGGACAACATAAGATTTTGCAGCAGTTGATTGATGAAACAAATATTGCATTAAACAAA
CAGGACAACAACAAATGACTTTAACTTATGATGGAAGTTTATATAAACTAATCCATGAAA
GTGGTAACAAATTTAGTCATGACCTGCAAACAAAGATACCCAAGAGCAGTTTACCTCAGT
TCTCCAGCATACAACAATCAAAGATATGCAGACTTGACTGCTATACACTATAATTAAGTA
TAAAAGCAAAATTGCATACGTCTGATGATCCTATTTGTGTCCATTCCTTTTCCACCCAGA
ACAACCCCTTGCCCAGGCATGCTAGAACAAAATGTTTGTACCGTGTCTTTGATAGTTTGG
AGCCAAATTCGAAATTAAACATTCAGGAAGTTATATTTAAGTCAACTACATAGAAGTAGA
AGCCACTGAGGAGAAGAGTCCAGTGTTTTGGTATATCTCGCATGTTGGGCATTGATTTGC
CACCCCTAGTAAAGGATTCTCATTTGTCAGTTAATGTACTTAAATGGATAAACACAGTAA
ATTTAAATGTACATAGTTACACACTCGATACTTGTATCCTCTTCCATTAGCTTATTACCG
TTCGACAGTTGAGTAATATACTAAACTGAAGGTTTTGATGTTCAATTTTGTTGCATATCA
CTAGAGATCTCTACCTGCAAATCTAGGAGAAAATTGGTCCAATTGACACAATGCGCACAC
AACGACAATTAAACCAGATATATCTGTACCAAATAGGGTTCAGACGCTGCAACAACCGCA
ATCAATTTGAAGTCACAATCAAAACTAAAAGGGGTAAGTAAAGTGGCAGCTAGAGCATTC
ACCAATTAGAGCAATCGCTTCATCTTAAAGGCGACACGGATTCAATTGCGTACCGATACC
ACCGCCAGCATAACATAGCAAGCAACCGGAAGCAAAATCTGAAGCAACAGCAATGCTAAA
AGTCAAACAGCGGTGCTCACCGACGGCAACTGGAGCTCTGCGAGGCCCCCGCCAGCGCCA
TCGGAGACCACCAGCTCGAACGGCCCGGAGAGGTCGAGGTCCCTGACGCCTGAGCCGAAC
CCGATGGCGCCGTCTCCGGCGACGAAGTCGACCCCGTCGGGCCCGACCACCTCCTCGACC
GCGGGGGCGTCGGGGCGGCTCCAGTCGACGGCCTCGTCGGAGGACCGCGCCAGGGCGGAC
AAGGCGCCCCCCGCGCGGGCGCGGAACTCGTAGCGCTGCACGGCGCCGACGAGCGCGCCC
TCGGCGTCGAGCGGCCAGACCCGGACCTCGGCGTCGGGGTCCCAGCCGTACTTGTCGGCG
ACGGCGTCGATGACGTCGTCGAAGAAGGTGGGATCCGGGGCGGGGACCTGCTCGCGGCCC
GCGAAGGCGTAGGCGTGCGCCGAGGCGTTGGAGGTGGCCGGGAGCGGGGAGAGCGAGGCG
GCGCCGGCGGGGGCGGGGGACGGGAGGAGCAGGAGGAGGAGGAGGAGGGGGAAGGGCGTG
GCCATGGCCGCGGAGGGAAGGATCTAGAAGGTTCGAGAAGGGACGGATTGGGGTTTGGCG
AGAGGTAGGTGTCGTGTCGGGTCGGGTCGAGCCCTCCGGAGGAGGATCTCTTGACGGAGG
GGGGAAGAAGGCGGGGACGGTTCTGCAGATATATTATTATTATGGCGCCCGTGGGGGTGG
TTAGAGGCTTGATAGGAGACTGACTCGTGGGACCAGTGGACTGGATTAAAGCTTGGCTTC
CTGGCGCCTCACCGTTTGCGTGCGGCCAGTTTTGTTATCCTAAATGTTAAAAATCTGACA
ACAATTTAGGACCCCCTTAAGTCCTGTTTGGAACCACAATAGATTATAATAATTTGAATT
ATAAAGATAGATTATATAATCTAGTTTATAAAAATAATCCAGGTGGTATGTTTAGAGGTC
AGACGTTTATATAATTCATGTTTTACATTGTACAATGACATGTCTGTCCTGTATAAAAAT
AAGACGGTGGCGGTGGCAGTAGGTCATTAGTAATCCATAATCTGA