morexGenes - Barley RNA-seq Database

Contig contig_48063
Source Contig contig_48063
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48063 (7743 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_48063

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63875	1	1899 bp	MLOC_63875.1	Available	Available	LOC_Os03g11440.1, FRAME:-1, EVALUE:0.0, 13103.m01291 protein protein transport protein Sec61 subunit alpha, putative, expressed
CDS Structure of MLOC_63875

Contig Sequence (7743 bp)

>contig_48063 7743 assembly3_WGSMorex_rbca.fasta
GACAGAGGATGCTGCCGCCGCCACCACTGCTGCTACGGCCAACTGATCGATCGGAGGGTA
TAGCTCGTTTATCCCGCTCGTGTTTATCTTAGTCCCAATACTACTAGCTATATGTGTAGA
TCTTTCTATTATATGTGTAGTACTTGATAGTCTGCTCTGTAATCAGTACGTCATCAATCT
AGTCAATACCATGTTAGTAATTATTTCGTGGAGTAATCTATTCGGAAAGTTGACTATTTA
CTCAACATATTGAAAGGCCTTGTCATTAGCTAACAAAGAGGTTTTGATAAAATCTGTAGC
ACAAGCAATTATCACTTGCCCATGGTCTATGTGAGCACCTGAATAGTATGATTCAAAATT
TTTGATGGGGGACTAAAAAGGGAGAACGGAAAGTAGTGTGGGTGTCATGGGCAGAGATGA
CACAACCCAAACATATTGGAGGATTGGACTTTAGGGATATTGATAATGTCTTGCATTGCT
AGCTAAGCAAGCATGGACATTAATGCAAAATCAAGAATCTTTAAGTGTGAAAATTCTGAA
AGTTGTGTATTACCCAACGGGTGCTATATTGGATGCAGAGTTGGGATCATCATCGAGCCA
ATTGTGGAGGTCCATAGTGGAAGGAAGAAATGTGCTTAAACTGGGTCTAGCTGAGAAAAT
TGGTACGTGTGAACATACTCGTGTGTGCGAGGACAACTGGCTGCCCTGTGATTTCAACGA
CATTTCGATTGTGGATGGAAGAACATTATTCTTTCTTCTTGAACATGATATAAACCCTAA
CGAAATTAAAAAAAACACCTAAAACAGAGTCCTCCCGTCATCAAGGACTAGGATCCACGC
ATCTCCATGACCCTAAGGCCACAAGAGACGAGGCAGGCCGGCGCCGGCACCGGCACCGGC
GTGAGCCGGAGGAAACCCTAACACTTATGCTTCTTGTGTTCCCTTCTCGCTGTATTTCAT
CATCTCTTTTCTTCGCGTGGAATCTATGTGGGAATGGGAAATTATTAATGGATTCCATGT
ATAGGGCGTTGACACAGGCTGATGTGCGAGTCGATAATAACAAAAAAATATGGCGCATGA
AGGTTCCACTAAAACTAAAGATATTCGCATGGTACCTTCGGAAAGGGGTCATATTAACTA
AACATAACCTCGTCAAACGGAACTAGCATGGCAACACGAAGTGTGTATTCTGTTCTCAAG
AAGAGACAATAAAACACTTTTTCTTTGATTGCCAGCTTGCGCGATCTATTTGGTCAGCTA
TCCAAATGGCCTCCAACTTGTATCCACCAACTTCAATTGCCAATGTTTTTGCTAACTCGT
TATTTGGGATTGATACTAAGTTTAGAACCACTTTAAGGGTAGGAGCGATTGTCATTATAT
GGTCGCTCTGGCTGAGTAAAAATGACAAGGTTTTTAATGATAAAAATTCTTCTCGTTTGC
ATGTTATCTTCCGATGCACATGTATTCTCCGTTCGTGGTCCACATCATAATGGACGGAGT
TTCGCGACCTTTTTATGAAGGCTTCAGTGCGATTGGAGAAAATGGTGAGGGATATTTTTA
TCCCACATGGATGGCAGCGTAATCTCTGGATAGGCCCTCCTTAGGCGATGACGACTTACT
TCTACATGATTGTACTACGTCTCTTGCTGCTTTATTTTTAGTTTTTTCGGACTATGTCTG
TGTGCATCATAGTTATGCAGAGGCTCGATGTAATTCGCTTAAAACTTTTTAAGTAATAAA
AGCCCTTTATAAAAAAAAGAAAATGACTAGTTGATGCACTGCAAGAAGTTCTCATGGTGC
ATGATTTTTGAACCGGCCTTGTGCAATTATGTGTAGTTTCTTAATATTCTTATGTTGAGA
CCGTATAAGAGCATCTTCAATTGATGATGTAAAATAGGTCGAAACCACTTTTTACATCAT
GGGAAGGCAAAAACTCTGCTCTAATAGACGTATAGATGCAAATATTTTTACTCAGCGAAT
ATGTTGTGATGTAAAATAGGGCACCTAGTGATGCAAATTTGCATCACTTGATGTTCTCGA
TGATATAAGTATTACACCCACAAGACGACACCTGTGAAGTATTTTGCAACACCTATTTTA
CATCATTTGTTGAAGTTGGAGGTTTACATAATCTATTGGAGATGCTCTAAGAAGTCGATT
AATGCTATAACTCGTCACTGTGCCTGTGAGCTTTGAACGTTGTTTATTTTCATTCAATCT
GAAATGGAGCCAGGGAGAAATCACTTTTATCAAAGAAAAAAACTAAATTGGTGTTCTATG
TTAACATCTTTTTCTATAGACGTGGTCAAACTTAAACAAGTTTGACTTTGCAAAAACTAG
AATTTCAATTATTTTGGAATGGATGTACTACTAATAATTTGCAGGCGTCCATGCAAACCA
ATCTGTGGTTGGATAGTTAGAGGAACAATGGTATCCCTAGCCCACCAGGGTGACAAGGCG
CCTATGATGACCTCGTAAATCTAAGATGATATGCCAGCTTAGTCTTTCCGAGGTGCTCAT
AGAGATACGGCGTGCGTGTGTGCGTTCATAGGGGTGAGTGTATGTACGTGTATATAAGCA
CTTACGTCTGTACTGTTTCAAAAAAAAACTAGAGGATCCATCACTATGACACATCGAATT
GGAATCATAGTCAACTACTCCCTCCGTTTCTAAATACAAGTCTTTTTAAAAAATTCACTA
CGGACTACATAGGGAGCAAAATAAAAAAATCTACTCTCTAAAATATGTTTATATACATCC
ATATGTAGTCCGGAGTGAAATTTCTTTAAAGACTTATACTTAGGAACGAAGGGAGTATAT
CACATCGATTTACTACTAGATACTCTGGTTCTTGGATTGCTATAGAGGCCAATCAGGTGG
CAGATGGATTAGCAAAGCATTCCTTTACTACTAGATACTCAGGTTCTTGGGACGATGAGA
TCCCTGATTTTATTTCTCACCTACTTGTAAATGACATGTCTATCCTTTGAGAAATAAAGT
CTATTTTCTGTCAAAAAGAAAAACTATATCACATCGAGTTCCCCTGGAAAAGAAACAATC
ATATCGATTTTTACTGAGCAGCCATTTTCGGATGAAGTTAAGCAGTGAAATAAGATGATG
CAGCAGCCCAATGTCCCCATATATCAGAAAGTTAACTGTTGGCAAATTCAGAGAGGTTAG
TATGGACTATGGAGGATTGCCGCAAAACAAAGAAAGTAATATACAATTTAGTTCAAAAGT
AACTGCAACATATCCGGTTACTAAGGTAGCCAAAACTCAGCAGACCACTGAACACAAACA
CTTGGCGGCTAATTGGCCATGGCTGCACTTGGCCGATGTACATGCTACCATGCGCCTGAA
AACACACACACACACGCAGACTCTGCTACAATTTCTGAATCTAAGGTCCCCAGACAGTAT
CTCGGCTTGCAAGAAGAACCAGCTAGCCCTAGCACCATATCACTCAGTCCTTGATCAAAA
ACCGAAGAAACCAAGCTCGGTCGCCCTTTCCTTCTCGAACGTCTCGAAGTATTGGTATAT
GATGGTGACCGCAAGCAGTATACCGGTTCCTGAACCGATTGCACCCATGAAATCAGCTAG
GACAGTCAGCGCGCCAATGCAGACTCCTCCAAATGCAGCAGCGGTGGGGATGTATCTGTT
CAACTCCCTCTCCAAGTTTGACTCACGATGGCCTGGCATCACCATTTGTTGTTCCTGTTT
AAGTTCCAAAGTTAGAAGTTTTCAGGTAGCTCTTGGATAGTGATTATTCATGTGCAAAAC
CAACTATAGGAAGTAGATCAGTGCATATAGCAGTTGCAGTTAACTAGTACGTACTAGCTA
CAAATGGTAGATATAGATGCACCTAGCATATGACTGCAGCTTCTAATCTCAGAAGGCAAA
AAATAATGGTTCACTGAACAGATCTTGTACCAAAGTACTAGATATACAAACTAATGGCAT
TGTAAACTAATGTCCCTCAGAGATATTCTTGCAAACAAAATCCCTTGGAGATTAATGTTA
GTGGTGCGGCGATTTATCTAAAAATCAGCCGCAGATTCTTCATTTGCTGTACTTCAAATG
CATAGTATGATAAAACTAGATGGTGCTCATAGCAAACAACATGTTCCACTGTTAGACTTC
AGAACAGTACAGTGTAATACCATATATATGAAAATATTTATTGACGCAATCTTACAAAAA
CAAAAAATAACAGATACAGATCCTGCATCCTAGAGGACTAAAGGCCAGCGCTGTCTGTGT
AACATCCTATAGCTAAGTAAAACTACAAAATGGCATCAATCAGTGACATTTTGAATAAAT
TGTACTCCCTCTGTTCCAAAATACTTGCCGTGTGTCGTGGCATTAAATTTGAACTAAAAC
TATGGCAAGTACTCTGTATTTTGGAACGGAGGGAGAAAACAAACTACAATTTACAATGGA
ACACAGCTAGGAACTGTAAGTAGTAGATGGAAGATCTTCACTTGCACCTGTTTAACGAGT
AAGATATATGCGAAAACATATTTCAAAATATATGCAGCTAAAATGAGCAACTATATGCTA
TATGTACAAAGTACATTTACCTTGAGCTGCCTAGCAACATCCCTTGCTGATGAACCAGAA
ACTTCAATCCATGTCTTTGAGAAGAGAGCGCAAGCTGACAGCATGAAGACCACATAGAAC
AGCGCATGGAATGGATTTGCGACAACATCAGCCAAACTGCACGGTTTCCAACATGTTCCG
ATATAAGTATATCAAAAACAGTGTGTGTTGTGACAAAGTATAAGAAAGAAACCAAAAGCA
TGATAAGAACATGTAGGTGTTAATGTAAAAGAAACTAGTTACCTTGATGGGGCAGTTACA
TAGTATGCAAGACCACCAACAGGAATAGAATGGCCTGAATACTCGGATTCCTTCCATATA
CCGAGAAGGTTAACCAGGAAGTTGCCACTGAACTTCTTGTAAAGAAGCTGAAAAAGCAAT
AAAAACGCATTAGCACTTTCACATACATACAGCAATTTAGAACAAAAGCACTGGAATCGA
AGTTAGTACCTGAGATATAAAGTAGAGGTTGGTAATCAGCGCAGAGTGCAGAATGATGGG
CATATTCGATGTGTAAAACAGTTTAATTGGATATGAACCTTGCTGCCCACGGGCATTCCT
TGATCTCACTGGAAGCACGACACGGAAGCCTTGGAAATAGATAACAATGAGGAAGACCAG
GACAGTAGCAAGTAAGTTGGTCACGTTGGGAAGATTCTGGCGGTAGAAAGCCTCCCGTAG
GGCACGGACTTTGTCAGTTCTAGTAATCAAGAGGTGGAACAACCCAATGACAGCCCCTTC
AAATTCAGCACCACGTCCACTGTTGATGGTTGTGGGGCTAAACGCCTTCCAGATGATATT
CTCACTGTATGACACAAGTTTACCATGAGCCATGGAATCACAGAACAATATTCAAATGAC
CGAAGAGAAATAAAACTCAGTAAGGTTACCAGATGTTGGTAGCGATGAATAGAGAAATGC
CAGAACCCAAACCATATCCTTTCTGGAGAAGTTCATCCAGACAGATGACAATGATGCCAG
CAAAGAAAAGTTGAAGTATAATGAGAATAGCATTCCCTGTTCCTAGTTGGCTCACACTGC
CATACATTCCAGACAAAACATATGCCACAGCTTCTCCGATAGCAATGAGGATACCAAGCA
ACTTTTGTGCACCATTCCTGAGTAAGAAAAAAGTACTATTTGTCAGAAGACCATCATCGG
GTACAGGAAATAAGTGTGAGGAATATTCAATTACTTCCATTGGTTATTCCTTGAATAAGA
TCTGAATTTTTACTGATCAGATTATGGAAACAAAATCAACCAACATGGACAAGAAGGATA
TTTTGCCGTTTTAGTACTTACAGAAGTGCACGATCCTCTCTCACACTGTTGTCAACTTCA
ATGATCTTTGATCCTACCAGAAGTTGCATCACCATCCCAGATGTCACAATTGGAGTGATA
CCCAGCTCCATAACAGTACCACGGTTGGATGCAAGAATAGCACGCAACCAGTAGAAAGGG
TCAGCTCCAGTAGTTGAATGGATGCCATAGAGCGGGAGCTGGCTGCACACTAGGAAAATG
AAGAGGGAAATAACAGTGTAGATGAGTTTTTCTCTGAATGGAATTCTCCTATCAGCACTC
TGTACTTCCGGTAAGAAACCCAGAAAGGGCCTGACAAGATGCAGCACTCTAAAACCGCCA
GCCATGGTCCTGTGTTGAGGAAAAGAAAAATAAATCAACATTTCTCGATACAAACAGAAA
ACTGAAGTACAAAGTAACCTGGGAAACCTTATGAAACCCTCAACTTGGTAGAACTAATAC
AGCACAGGCAACAATTGATTGTAATTAAGTTAAGAAGGGTCTATTTGACTGGGACATAAG
TGAAGCTACCAACATTGTATAACATCTTATATTCAGGGTACAGTAAGCTTAAATTTCGAG
ATAAAACACAAACAGAGTGCAGTATAAATCATGACAAGAGTCCTGCTTCAAAATGTGCAG
GCGGGATTCTATGTTGGCTACATCAAATAAATCATCATAATCCTAAATCACAGTCGATGG
GGTGAGCGAAACAAAATGCCCACTGCCTAACCGCTGTCTGGGACCAATCTGCACGAAATA
AAGCCTATGATTCGCAAATATCTGAATCGTTCTCCTGTCCATCTCAGTAAACATACAGAG
ATGAATCGCACACCGAATAATTGATCAGAGAAAACTACTCCGTAGTAGTTAACCAACGTA
ACTCTCACCAATAACAAATATGGAAGCATAACAACTCATGCTGTTACGACGACTACTTGG
TATTCAGTGATCGTCATCCTGGATCCTTCCTTTCAAATCCCGACGGACAAGGAAAGCCCG
GATGCGAGGTGAATTCAGCTGGTGCGGGCTTCTGCAGTTCCTCCATACGACCGGACCAGC
AACGTGTCCCGTCATGCCGCGTCCAGCACCGGCGAACGACCAAACCAACCGCCGCGAAAA
TCGCAATTCTAACTTGCAACGAGACAGCGACTGAATCTGAAAGTCCGAAGCTGCTTGCTG
GAGATCCAGGCGGGAGCGGGAGGGCGAGGAGGCATTGGCAAGCGGCCTTACCTGGCCGAC
GGGAGACCCGACGCCGAGGAGAGAGGAAGGCCGCTCTCCGCCGCCGCCGCCGCCGCGGTT
GACGAGGGGGCGTGAGACGCAAGGCCGAGGAAGGAGGGAGGGAGATGCCGAGGAACACGA
GACGAGAGTGCGGGAAGAGCGCGCGCGTGGGTTTTAGAGGGAGGCGCACGGGAGCAGGTG
GCGGGACAGCGGGTCGTTGGCCCTCCGAGCCGTCGGATCGGGAACGGACGCCTCGGATGG
GGTCCTGTGACGTGGAGCAGGCAGTACTACTTACTAGGAGTACTACTAACAGAAAGCTCA
TGGTGGCGTCTTCCGCGAGGACAAGGGTGAGGAGAAGGCACGCTTTACGGTTGGGGATGG
CGTGGCGGCCGGACCCAGTTGTTAGGATAGAGTTTCCACGTGGCTAGGCACATTTGCCTC
TTCTATTTATTAAACAAAAAATCAAACCTATTATAAAAACTTATCAAAAGCGCAAAACAC
TCTCAAACATAATAAAATTACTCTCTCCGTTCGTAAATATAAGACCTTTTAGACATATTA
CTATAAACTACTCCCTCCGTTCCTAAATATAAGTATATTACGATATTTCACTAGGAGTCT
ACA