Map Locations of contig_48048 (8434 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_48048

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63866 5 1877 bp AK365959 Available Available None





CDS Structure of MLOC_63866






Contig Sequence (8434 bp)

>contig_48048 8434 assembly3_WGSMorex_rbca.fasta
TTCCACCTGGCTATGCTCGTGTCGGGGTGGAAGAAGTGATGTTGGGATATGAGTCACTAC
AGCTCGACATTCCTGGAGGTGAAGGGAAGTAGACACTGCAAGAAGTCATACGTGACATGT
GCTTATGGAGAAAGGACTGCATCGTCTTTCCAAGGCCACCAACTCCTCCTCCAAGTCGGC
CGCGCCAGCCGACTCCACCCTGCCAACCCGCCACCGGAAAGCCATTTCATTTTCTGTCAA
AGAACCAGAGTCCAAAGCGGAATAAGCCTAGGACAAACGCACCCCTCCTCCCCCGCCAAA
GTTGGCTTACAAGAAGACCAGAGAGGAATTAGACGAGACAGTGGCTGCTAAGTTGCAGGC
CCATAAAGACAAGAGAAAGCTTGTACCAAAGGAATAATACCCCTGGAAGACGTCAAGCGC
GTTCTGACCAATCTTGCGGACCTGCCGCCTCCGAAGAGAGTTAAATCAGACTATGACCGC
TCTATTGCCAAGTCATATCAAAAAGGGCAAACGAAGACGACGCTCCTTACTAGAAGCACG
AAAACCATTCCCCAGCTGGGAGAACGGCCAGTGCAATTGATCCCGCCGCTCAAGGTGGGT
TCCGATGAGTTCATAGTCGATCCCGGTGTTGCTCAAAAGATGGCTATGGAGGCCGGTGTT
ACAACTCCTAGGCAACGAGAGCATTCCCGCCACGGTGGAAAGGAATAACCAACTAGTATG
GACATTTCAACCCAAGAAACCTCTCGCCAGGACTAAGCTTGTCAAGCAGCTACCAATGAA
AATGTACAAATTGCATACCTGGTACATGAAGGAAGCAGAACCCGAACGTGAGTCCCTAAT
GGTGAAAGTCAAGCCAGAGCATTTCTTCAATTGCAAAGATTTGTGGGTTGAGATGCCAAA
ATTTTGGCAGTTATATAACCAAGACGCACTCAACAAATCTCTCGTCAGTTGCTATTGTTT
GTAAGTGATTTCTCTTTGTAATTCAAGAAGAACAGTTTCAGAAAGGCTCGGGCTCTTATT
GGCAAGGAAATATGATGAAAAAGAAAGATCTGAGGATGAATAGAGTCTGGTGTAAAAAGT
CTAGCCATCGCTACCACATTCGTCAGCAAGTCCNNNNNNNNNNNNNNAGAAAATGACAAC
GTCAACAACACTAATGACTACGACGACGACTTTGCTCCCATCTATTGCTTCATGACAAAA
GGTGTTAAGGTACCCAAACACACTTCGTCTTTTGACTCAAGTAGTAGTGAACCTGGTAAT
TATCAGAAACTTAGTTACTACAAACTTGCTAATATCACCACTAAGCAACAAAATGCTCTT
GAAAAGCTTCACAAACTGGTAGACAAAAGCAATGACCTGTTGAACGAGGAAATGGATTGA
ACTCAAACCTTGACTGATGATGTTCAAAGTCTATTAACAGATCAATGGCAATGGTTTGAG
CAATCGCCTCTTGTGCATGATTTTCCGGCCTTAGTTATACATCAAGACCACTTACACAAG
ATTTGGGGGATGGCAGCATTTAGGGATGCCCTAGTAACAGTATACTTACATTGCTGCACT
TCTCACAGGATAGTTAGTCATTCATCATCCACTGCCACACTTCCATACTAACAGGATGCG
AGTTTCAGAGAACTCAAAATAGGTACCCAGTAACATGTTCTGCTCTAAGCTGCTGCTACG
ATCCACAGATCACGTACAGAAAGACGCCATAATTTGAAGTTCAAGGTTTTAATCTGAGAA
CACACACCCACCAAAAAAAGAGCTTCTCTCCACAGATGCATGCGGGGTTGATCATACCAC
CTCAATAGTCTCCCTGCAAGAATCAATTGATCAAAACATGTAAAACACCGGTTAAGAATC
TGAAGCAGCTGGCAATGTTATCAATCAGTCAAGAAAAAATAAGATGAAAGATGAATCTCT
TACAAGAGTAATTCCGCAATCTCTTGACTTTCCGGGTCCAACTCCAAAGCACGCAAGAGT
GAGTGGTAAGCATCATCATAATCCTACGGAACGCAAGAGCACAGTGGAATCAAATGACAG
GACACGTGTGAAAGGAGCAATGAAATTGTCAGTTTCAATTAACCCTCCCCCTGCACCTCC
ATCAAAATTTGAGCTGCTCCTTGCCGATAGTACGCCTTTGCCCACTTTGGCTGCAGTTTT
TTGCATTCAGTTGCATCCTCATAAGACCTTTCGCCATCACCCATGCGAAGCCAGCAGAGG
CTCCTGTTTGATAACAACTTTGCGTCAAAGTTATCCATCTTCAGTGCCTGCAAGAGACAA
AACCGAGGAAAATTGTCGTTGTTGACACATTCCAGAAGCACTAATCACTTTACACATTAC
AGACTAGACACTAGTGTGTGCGACAGGATGCACACACTAGTGACTAGTCTTTCAACAAGT
ACATGTGATGTGATAGTATTACAAGGTAACTGGTCATTTTTTACACATTGTCAAGGCCAA
TCGATTTTAATAATAAATCAAATAAATTGTAATGGAGAAGCATGTTTCATGGCTGTGCCT
CCAGTCTAGAAATAAAAAATAGTTCGTCAGCGTACCTGTGTGTAGAACACTGATGCATTT
AGGTAATCCTGCTTCTTAAATGCTTCAGCTGCTTGTTGCTTTAGGTCAGAGATCCTCTTC
TCCACAAAATTATCATCCTGGGCAACTCACAATAACATGAGTCAGATATATATACACATA
ACTTAAAGAGGTCAGATGCGACTGAGGGAGAATCAGTACTCTAGCAAGATGTTAAGGTGA
AGTGAATAAATACAAGAAACAAATGTTTTAATCAATGCAAGATTCGAAAATCCAGTTTTC
ACTTGCTACTCAAACTGGAAAAAGAGATTGCTATTTAAGAAAATGAATTTGTCTCCTTGC
TATTTTTAAAAGAATCAGCGTTAATGAATTATAATTCAAACAAATCTTATTTAATAAAGC
ACCATCCCGATAAAAATGACTTTTCAGAGGTAAGAATTACCATTTGAGCAAAATAAGCTA
TCCAATAAACATCGTTCAAATAAAATGAGTTTCCAGAACAGAGCTTTAACAGGTATGCAT
GTGCAAGAAAATAGATGTGCATTTGACTAGCAGGAAGCAAACTAAGCTTGGGCAATTCTT
GATCTATGAAGTTTAGTTAAACGTCGACTTGATGCCAAAATTGCTCGGAGGACTAACATG
GAATCAAAATCGCAGTGGGTGTGCAAGAGAACTGCTACATTGACATACCTCAAGTTGCTT
GATTTCCATCTGCACATGACTAATGATTCCATCAACGCTCCAATTGGCCACAGTTGAAAT
GGGAGAGGTGAAAGGAAAGAGAATCGCGACATCTTCCCGTGTACCATACTCAACAGCCAA
CTCTATTGGCAATCTACCAAACTGTTGAGGAACAAGGGAACTAACCTTTAGCAAACCAAT
AATCAACATAAGGAAATAAGCAATGTTCTAGACACGATTAATGCAAACCATCTTATTCAC
CTGGCCAAATTAACAAAGACATGACACAAAGGGGAAACGGCGAAACAGTAACAAGGTTAT
GCAAAAAAAAAAAGGGTAAGTTGGCACAGCCTTCTATTGTTATCTTGCAGATAGCATGAT
GTAGTTGTACTTACATCATAACTGATACGATTGTTGCATATAATTATTAAGATGTCTACT
GAAATTCTGAAACTGTAGATCCAAGCAAGACACAATAATATGTGGCAAAAAGAAGCATTC
TCACCCTGTCAACAACATTTGGGTCTGCACCAGCTTCCAACAAGCACTTAATAGCTTCAG
TTAAGCCCTTCTCTGCAGCTTTTGCCAAAGGATTATCACCGCTCACATTAGCTCCACCCT
ATCAGATCAAATATAGAAGACAAGCGCATCATACCATTGTCTAGTTGCTAATAAAGAGAT
AACTAACTCAGACATCAATTTTATGAATATCCTACATCCCTACTGAAATATAATAAACAA
AGGATGACATACCTGAATCAATAGCTTCACACAGGACACAGAAGGTTTGTGTAATGCCAC
GTCTATAATTCCAAACAGACCACCATCCTTGTTGGGCTGGAAAAAATAACAAAGTACTTC
ATTTTCATGCCAAAATATGACACAGTTTCAAGAGAAAATTGAATTTGTAAGGGAAAATGG
GCGGAGCTGATACTTCTTTTCTACTCCCTCCGTAAAGAAATANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTAAACGCTCTTATATTTCCTTACAGAGGGAGTAGGAGCACAGCTTAT
ATAGTTATATATCCCTTTGTTCCCAGTGATTTTTCAGAGTTGTTGTGTGGGTCACCGGTC
CCACCATGCCTGGTGTGGCTCACACACCAAAAGCTATGAGCAACGCCTGCTTGGTTTTTC
TGAAGGTTGCCAATATTTACCACACTTTTTACTAAGCATGTCCAAGGTTGGATGATGAAA
ATGAGTGCCATACTTTGCCAAGCCTAAGGAATCCTACCCAATTTTTTGAGTCCGTGACAC
GTGCTACCCATGTTGCAGCAAAGAATCTTGCCACAAGTGCGGGTGCCAAACAAACTGCCT
AACTTTTGGCGTGGCATGGTTAGTTACCAACCAAAAAGGCCCTCAAATACAGGTGCGCAC
AATTGCAGAACGTAGCAAAGACCCAACAAAAGAGAGAACTGGACTAAAAAGACAACATAT
AACAAATCTTTTGAATAGTACATCTGCACCGTGCTGCAAAAGGATCTTGAGAGTACTAGG
ATGTCCTTTAAGAGCAGCAAGAACGAGTGGTGTCCCAAGATCTGATATTCCATCAACATG
AGCTCCTTTAGAAAGGAGAAACTTTACCATTTCAGATTGCCCTGGAGAAAAAGAAGGCAA
ACAAAGATCATAACCCTATTAATAGTACATGAGAAAACGTTTTTGGGCAACAAAATTTCT
ATAGCTCGTAGGGAAAAGCAATGTTGTTGGTCCACATGCCCCTGAATAAACTTACGGCAA
ACAAAGAATTACCATGATCGGTTACCATAAGACGTAGGCATACTAAATAAACAATCATTT
AAGGAGAAACTACTTCTGACAGCCAGAACAAGATAGTGTATCAAATAGCTATCCCGAGAG
ATTTGCTTAAAAAGACAGTTAACATACTAAGTTAACAGACATTTTTGGGAAACCCGTTTC
AATGGCTAGAACAAAACAGCATATGAAATAGATATCCTGCAGGAAGATCCGCGGAATAAA
AGGGTATATACAATGCCCAAAGAAATTGGTACCAAGCTGACGGCACATGGACTCACATAT
CCGAGAGACAGAAACCCGAATTAATGTGACAGCTATGTTTACAATTTTCTTAAGACTGAA
CAATATGCAGATGCTGATGAACATGAGAAACAACTAAGATCCTCGGTGTTGTTTTAATTT
ATGGCAACAACTAAACTCTTCTATACAGCAACAATAAAATTGTGTATTGTAGATTAGCTT
AGCTCTTGGTAAAATAAATCCGGCCACTTGTTGGATCGCTACAGCATGCCTCTCCACATT
CAACAGAAGGCTCCACGACAGAATATCTGCTGCTACATTATTGTAGTGTTCTACGACTGT
TTTTGGGCAAGAAAGTTTCAATAGCCAAGGAGGAAAGCTACTGCTGCTACATAATATCTG
TTGGTTCACATTGTACTGAATATAAATATACGAAAAAAAAGAATCACTATGATCAGTTAG
CATAAGTTGGCGATCATACTGAATACATACTTTAGGAGGAAACTACTTTTAACATCTTGA
ACAAGATGGTATTATTAAATGGTTACTTATCCCAAGAGACTTACATGAAAAGATAGTTAT
ATTAAATACTAAGTAAACAGACATTTTGGGGTAACTATTTTCAATGGCTAAAACAAAATA
AAATACGACATATAATAAGATCAGTGGACAAATTCGTAAGTGCGATATCTGCAGAAACTA
GTAGAACAGGATTTCGAATTAATGTAACATGCTTAAACTTTCTTTTATGTTTAAAGTATC
ATATATAAGAGTGACCGATATACAAACGTGGAAGAACAGATATTTATCACGGCAGTAATT
TCTTTTCTGTGTGTACCACGAGTTGCAGCTGAATGAAGAAGAGTGCTATCTCCGCGTTGC
AGATGCAGATTAGCACCATGGTCAAGAAGGTATTTGACGGCAGGGAGGCGGCCATGTTTG
AGAGCATGCTCCACAGGTGTGAAATCTAGCAGCAAGATCCACACGAACAGGTCAAAGTCG
ACGGTCAGGTCATAAATTAAAGCCACGCAAATTGTCCAAGTGGAGAGGACAATGCATTTT
CATTAGGATCGGGAAGCAAATTACCAATAAGGGTGTCAGGCTTGTGGATGTCCATCTTGA
CCTCCTCAACGAGGTACCGGTAGACCGGCAGCCTGCCGAGTGCACCGGCGGCGTGGAGGG
CGTTCATGCCCATGTAGGTGGTGTTGGCCACCGTAACCGGGATCCCATGCCCCTGCACGT
CCAGCTCCTTTGCAATCTCTGCAGTTCACACAAAAAGGGGACATTTTTAGTTACCAATCG
GGACAAGAACGCAGCATATGAATAGTTAAATCAGAATCAGAAACAAATCGACACTGATTC
TTAGGAAGGGGGCCAAGAATTTGGTCTGAAAACCCCCAATTGTGACGAGAAAATCCCCCA
AGCCCCAGCACTCCAACCTAAAATCAAAATCACAAGCAAAATTGAGATCCTGGAGCCGTA
TCTCGCCCACAATCTGCGGTAGATTGGGAACGAAGCGCACACGGCAGACAAACCCTAAGC
CTCCAGCCAGATCTGGCGAGCGAAGTGACGCCGGGGGAATTGGTGAAATGTGGCACTTAC
TCTTGATCTCGCGGACGTGGCCGTGGTGCGCGGCTTCGATGAACCTGGCCTCCGGCGGCC
ACCGGGCGCGCTCTGCACAGCAAGCGAAATCGGACGATGAGACGGCCGGCGGAGGGAGGG
CAGATGGATCGACGGTCGATTGGGTTAGGTAAAGGTTAGGGTGTCAGTCACCTTTGCCGA
GGAAGTGCTCGTACATGCGAGGCAGCGGCCATTCCCGGGTCCCCATCCTCCCCTCCCTCT
CTTCCTTCGCCGGCGGCGGTGACGGTGGCGGTGGCGGTGGCGGTGGAAGGCAAGGACGAA
AGAATCTTGTGGACTGTGGGGGAATGAGAAGGGCGGGAAAAGGGAGGGGTTGGGTCTGAC
ACTCTGGCCCCACTCCCTTTCCCTTGCTTTGCTTTTCAATTTAATTTTTTAATTTCAACT
TGATTGTGTGGGGTCCGACAGTAAGGCGCCGCATTATATTCTGTGACGTCTTAGTCAAAG
GCACCACACCCCCGATCATGCTGGCGTCCGACCCTACCCCCAGCAATGTGGCGCCTTAGG
CGTTGCACTTCCGATATGTGGCGCCGAGCGCTTAGGCGTCACACAGCCATTTATCCACCC
GCGGGTCGGCCCTCCCATCACCCCCACTTTCACTCGTTTTCTTCTCCCCGAAGGCCGGCG
ACGGCTGCCTCATCTTCTCCTCGCAATCCTCTCTTCAAAATATGTTAGATCTGTGGATTT
CTTTTGTGTATTTATACCCCCAAATAGTTCTAAAGGTGATCTCCTTGGTTTTTCATCTTT
CTATCCAAAAAAATTGCACATTTTTCAGATTTGTATAACTTAGGATGAGAGCTATGTTTT
GCTTGGATTCGAAATTTATATGAGAAGTTAGGTGTGATTTATGATTCCTAGATGAGTAGA
TGAGTATTTAGGATTTCTAGATGAGTAGATGATTATTTAGGATTCATAATTTATAATATT
CGTTGATTTTATAATAGCTTGATGAGTATTTAAATTGTTAGATGAGTATACCTATATGAT
AGATGATTATTCAAATGGGTATTCTTGTACGATTGTTTAGATGAATATATATTAGATGAT
TTTTTTTAATAACATGTAGGATGATGTGGCTTTTGAATGATTCCTATGACTTTGAACACC
AGGCCTACTTGATGTCGGAGAAGGGGGTGGTAACTACAGCATACTATTACCTTCTAATAT
ATTGTATTTATTTAAAAATATTAAATCGTAATCATATCACTTCTATGTTTGCAGAAGCCT
ATGCCCTTGAAGATTTGGTCTCACGGGGCATCGACTGTCATGTCGTACGATGAGTGGTAC
ACATCGTACATTGAGATGACAAGACTCCTTCCATTCATTCATCTTGTGAGCCGATCAACG
ACCAACCTGAACGTCGCGGCAATCACTGCACTTACTGATCGATGGAGGCTGGAGACCCAT
AGTTTTCACCTCCGGACCTCAGAGATGACCGTGACTCTTCAAGATGTTTTCATGATCACC
GCACTTCCAATCGAGGGGAAGCCTCTTTGTATGAGCACTGATTCTAAGGGATGGAGGCCC
TTATTGGTATGTCACTGATGACCCACAAGTATAG