morexGenes - Barley RNA-seq Database

Contig contig_48009
Source Contig contig_48009
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48009 (5797 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_48009

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63837	1	389 bp	MLOC_63837.1	Available	Available	None
MLOC_63838	3	2056 bp	AK252170.1	Available	Available	None
CDS Structure of MLOC_63837

CDS Structure of MLOC_63838

Contig Sequence (5797 bp)

>contig_48009 5797 assembly3_WGSMorex_rbca.fasta
ATACATTATACGAGGTCATCGCCCCCCCCCATCATGTGTTCTAAGCTAGGTGGCACTTTC
TTGTGCTACCATGTTATACCATTCATATGTATCCTTATGAGTCGTGACTTATGAGGCGAG
CCGTCTGGTTTTGTGTTTCCTCCAATTGATCATTTATGTAAGAAAGAGTTTGTAAGACAC
TCTTAAATGATCATATCAAGGAAGACCATGCAGATGATTATAGCACAAGGAAGGATCTTC
ATGTGTTTTGAGTTGGGTGGCACATTCTTGTGCTACCATGTTATATACCATCACATCTTG
CACTTCAACATGCATCCTTATGTGAGGCTCCTGTCCGGTTTTGTGCTTCGTCAACTTGAT
CGTTTATGTAAGAGAAGGATTTGTAAAACACTTTCGAATGACCATATCAAGGAATATCAC
GATTTCATGTGAATATACCTAAACTTGTGACACTACAAAAGTTTGGTTTTCACAAGTCTT
CGAATCAGCACACACATATTATATAGATAAGAGATATTATGACCTGTCATCTTAAAGAGA
TACAACTGCATTTTACTTAGCTTGTACTGATTATTACAACAAACTTCATTTACATCAACA
GAGGATCATCGGGCTGAGATACTTTTCATCTTTGCCGACTTGTGTTTCATAAACAGAGAT
GCTAGCACGCTCTTAGTGTTGGCAGGAGCCTTCTGGATTTCACGCCCTGTAGGCCTGTCG
AAAGAACTAAACGTCGACATATGCTTGACACCTGTCTGATCCTGAAAATGCACACAATAG
TACCATCAAGAAATCAGGATAACCAAATCGATATCGATGTGGATAGATTTTAACACAAGG
ATGACGCCTTTCTGACTTGGTATGATTTCTTGAAAGTTTACCTTTGTGCCAGCCTTTTGT
ATAACGTCAGGTTTGGTATTCCTGTTCAGTTGCAGAGGCCTGCGCATGGGAGAACCAGGC
AACTCCTTACCTGAAACATCAGCAATTAGAATTTTAACATTTTGCAAGTGCACTCAGTGA
TCAAAATTCTAGTTTGAGAGTTAACAAATATGTTGTGTCAGAACAACAGTTGATAGATAT
GTGCACTTGATAGGTGAAACCACATTCATATGATTCCATGCCCTCTAAGAACTCAAACAG
ATGTATAACGAATTACCAAGAAGATGCAAACCATCCGATGCGGGTTTGGACGATATCGTG
TCGTCTAGGCTGCACAAAAACCGGGCAACAGCAAGTTAGACCAGAAGAACTGCACTTGGC
ATAAGAAACGACATGTCAAATTGACAAAGTTAAACGAAATGGGGATTTCAGTCTTACATG
AATGTAGGTTTGTTTGCTCCATCTGCTGAAGGGCTATTGTCTGATGCCAGATGCCAGGAA
AGTGTCTTTGCTGCACACAGAAAGTGAAGATTTTGGTTTGTTGTTTAGATACATAGCGTG
ATTGGCGAGAAAAGAGTGGCGCAAATGAAATTTGCAAGAACAGAGGGAAGAAGGAAGCAC
CTGAGGGGTAAGGTCTAGGCTGTGATTCCTGATTAGTGTCTGTTCCCAGGTGCACGACAG
CCTGAGTTCTCTTATAACCCGTAGCTACATTGCACAGAAGATTCTCAAGTTAAGTTCATC
TTCTTTCCTAAAACTGAAAGTTGAGATAGCGGTATCGCATCGCCGCTAGTTCATAGTTCC
TTACAGGGTAGGATGTAGTGCTTGTGGTGTTTCATGCTCGCCCCCATCATTTGCTGCTGC
CTAGACCCTTCTTTGTCCACATAGACTTGGCAGGTGAAGACTTGCTATGGACGGACAACA
GAGCAAGGGTCAGTTTAGATGAATGGTTTCGCCGCCATAGACTACTGCACATCTTACTGA
TAAACATCAAGCAAATACCTGGTTCAAGCGCGCAAGCTTGAGCTCGAATGTCGAGATCTC
GGACGCCTGCTGCTCGAACAGGTCCGTCAGCTTGTAGGCCACCGTGCCTAGGTGGTCGAC
GGCGTTGACAACCGCCCGCACCGCGTAGTCTTTCAGGTTGTCCAGCACCCTGACGACAAT
TAGCAAGTTCAGTTTCATGAAAACATGCCGTATTCTGAATCAGGATTACGACACACATTC
AAAATCACTAGTGTTAACTGTTCATTCAGCAAAATTTACCATACAGAGTTGACTCTTACT
CCATCTTTGATGTTTTAGAACTTTCTTGTGCACTGTCAGACATGAGCAGGGTGAACCCCT
TTATATGATTCGAAATTTCGAACCAAGTGACAAACTGACACCACATGATTGGGGAACACC
CAGAATAAATCCAATCGCCGGTACATGGTACATTGTCTGTCGTTCAGAAGAGAGATCTCT
TCAAAAAACAAACACCGCTAGAGTACTCTGAACAGTACTAGTATTATTTCTTTCTTCAGC
TAGGAGCACATACGTACATAGGCAGGCCGTTGCTGGATGGTTCCAAAAATCACAGATGAA
ACCAAAAGAGTAGAAGACATATCCTTGTTCGGTTCAGCTAGCAGAATTTGTTGTTTAGCT
GGTCACATTCTCACATCTGGACATGAACCTTCCTATACCTACCACTCTACCAATGCCATT
CTTGCCATTGCTAGCCAGTACATGCTGCCCCAACCTTCAGTTGAATTCAGTTAGGTTCCT
ATACTGTACTATGCCAGGTGACAAACTAAATAGAGAGAGGTAGATAGGCAGCACGGGAGA
TGCAAGTGTACGAGGAATCATCAGTCGGCCATGGTTGGTGGTAAGATGGTAAACTCTGTG
TGTACAGAGAGGATGGCATTGGCAATGGAGGAGGGAGAGGAGAGAGGAGGGGCAGGGCTC
ACATCTGCTTCTGGTGGGTGTTGAGGTAGGACTTCTCGCAGTACTCGGAGGCGGAGTAGA
GCTGCGGGCGCAGGTTCTTGAGCTCCTGCGTCCACCATGGCAACAAGGCGTCAAGATCCG
CCGTGGAGCGGAGGGATCTGGGGAAGGAATGGAATGCACCGACCTGCAGGGCCTTGACGA
AGCTCTTGCTGCGCTCCATGGAGGCCTCGTCCACCGTGCCCGCCCCCTCCCACTCCCCGC
CGCCCGGGCTCCGCCGCCGCCGCGCCGTCTGCTGCTGCTGCTGCATTCTCGAGTGGAGTG
CGGAGTAAGCGATATGAATGCGACCCAAACCGAGTGGTGGTGGTGGTGGTGGTGGGGTGA
AGAAGAGGAAGTGAGTGGAGCGCGCGCGGTGGGCGCACGGGGAGCCCGAGCTAGTAGCTC
ACCGCCCCAGCCCAGCGCGCGCCGGTTAAAGAAACAGCGTCGATCTGTGTAGTAGTGTAT
AGCTTGGATTTAGCGCCATTTGGTGGGTGGAGGCATTGATTGGTTCATGTTCATCCATCC
ATTCTTGCTTGGTTGGTGCTTGCTTTTGTCCCGGCTATCACACTCGTACCAGTCTCCACT
GCCGCTGGATCTCGCTCGCTGTCTTAAGCCGGCTTCTAATTGTCTTTCACCACCACTTGA
TGATTCCTTCTCATCTCAGTGGCAGATACGGATCTCATCTCATCTTATCTCAGTGGTGCG
TGACTGTAAATCATGCTAGTAGTAGCAATCTGCATCTAGCGTGCAGGCGTCGGCGTAATT
TGGTCATGATGCTAGCTAGTACTGGCATAATTCGATAGGTGATGCCTGAGGTGTACAGAG
ATGGAGCGTGGGGGGAGAGTGAGCAATCAATGGGGTCATAGGCAGGTGGTGGTGATGAAT
GCGTGTCGGTTCCGTCAGATGTACAGTGTAGGTAGGTACGCCATGGTTAGATAACAGCCG
GACTTTTCAAATGCTCGTGAAACATACGAAACCGGTCAAACATAAAAAGAATTTGATCCA
ATCAAATACTCCCTCCGTTCCTAANNATAAGACATTTTAGAGATTGCACTACAAACTACA
TATGGATGTACATAGACANNNNNNNNNNNNNNNNNNNNCTCATTTTGCTCCGTATGTAGT
CTTATAGTGAAATCCGTAAAAGGTTTTATATTTTGAAACGGAGGGAGTACCTCGTATCAT
CTCTGTATGAGGCTGCCTGCAAACCACCGCATTAAGGACAAATATAGGAAAAATACGAAT
ACTATGTTGTCGGTATCTTCAAACTAATGAAACTACTACATATACTATGTTGTCGGCGTT
CCCATGAACTGGTCTTGTGTTCGCCCATTTTGATTCGTTATCTTCAACTTTGTCTCTTTT
CATGGAGCAAGGCATGAGTCCAAAAATGTCTTTACACTAAAAACTCATATAGGAAGGAGA
TAGAAAGGAAACACATGAAGCTTTGGAGATTGGTCAGGTCGAAATTCAAAATTCAACCAT
TAAGGGTATCTTCAAAGCGGACCCTCAAATGGTCCGTAAGTTCGGACACACTTGGCCATC
CAATGCCGTCCCGTATCTGCCCTTGGATCAGTCAGGTAGTACAAAATCCCGTAAACTACA
GGTAAGCCAGAGGGGCTTTGTAGGAGTCAGGATATCCGTCACGTAGGACTTCGACACCTC
CGGCACACCCAAAACCATACTCGGATCCTCCCTTGCCGCCTTCGTTGTCGTATCGCTCGA
CTGCCCGCCAAGTCTGTTCCTGACCTACGTGGCTTGCCGCCGTTCACGTAGGACTTGCCG
CCGTTCCACAACTCCTGTCAGTCCACCGCCCTGGTACCATATGCCCATACGGATGCTACT
ATGGGGGTGATCACGCTCGATAAGTGTTCGGTGAAATGTGTTGGGGAACGTTGCATGGGA
AACAAAAAATTTTCTACGAACACATCTATGGAGATGCATAGCAATGAGATGGGAGAGTGT
ATACGTACCCTCATAGACCGTTAAGCGAAAGCGTATATTACACGGTTGATGTATTCGTAC
TCTTCACGATGCAATCGCGATCCAGCACCGAACAGACGACACTTCCGCGTTCAACACAAG
TGTGGCTCGATGACGTCTCCACCTCCTTGATCCAGCAAGCGAGGGCGGATAAGTAGATGG
GATCTCGACCAACACGACAACATGATGGAGATGGTGGTGGAGCAGTGCCAGAAGGGCTTC
CGCCAAGCGCCTCCGGAACTACGAACGAAAAAGAACGGGAGAGACGGGAGGGAGAGGGTT
GCCTCAAGGAAGAGGACTTGATGTGTTCAACCCTCCCCTTCCCTCCACTATTCATAGGAG
GCAAGGTGCAAAGGGGGGAGGGCACAACCTTGACCCCTCCTTGAAGGGAGGGGTGTGGCG
CCCTAGGGGAGGAGGGGTGCCTTCCCCCTTAGGGATTCTTCCTTACGAGCCGCATGGGCC
CTTGGGGGTTGTCCCAACAAGGCTAGGGCACCCCCTACAGCCCATGTTGGCCTAAGGGGC
ATGGTGAAACCCTCCATGGACATTCGGACCCCTCCAAAATCCTCCAAAACCTTCCATAAG
CTTCCCGGTACAATACTGACAAAAATCAAAAAAACAAATCGGTAGCCAAAATATGACTTC
CCATATGTAAATCTTTACCTCCACGCCATTCTGGAGCTCCTCGTGATGTCCAAGATCTCA
TCCGAGACTCCAAACAACATTTGTACACCAACATACATATCGCAGTACTATCCTAGCATC
ATCAAAGATTAAGTGTGCAGACCCTACGAATTCGAGAATCATGTAGATATGATCGAGACA
CCCCTCCAGTCAACAACCAATAGCGGGACCTGGATGACCATATTGATTCCTACATATTTC
ATGAAGATCTTTATCGTTCAAACCACGATGTCAAGGATTCAATCAATCCCGTATGAAGTT
CCCTTTGTCCGTCAGTATGTTACTTGTCCGAGATTCG