Contig Data
morexGenes
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Map Locations of contig_47986 (8036 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_47986

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63807 1 689 bp None Available Available None
MLOC_63808 5 1263 bp MLOC_63808.1 Available Available LOC_Os01g01302.1, FRAME:+3, EVALUE:1e-133, 13101.m00042 protein shikimate kinase, putative, expressed
MLOC_63809 1 2837 bp None Available Available None
MLOC_63810 1 279 bp MLOC_63810.1 Available Available None





CDS Structure of MLOC_63807






CDS Structure of MLOC_63808






CDS Structure of MLOC_63809






CDS Structure of MLOC_63810






Contig Sequence (8036 bp)

>contig_47986 8036 assembly3_WGSMorex_rbca.fasta
TCCTCGTTTTCTATGTTGCTTTATTTGTTGAACTTTCGTTGCTACTTTGGTTGCCTTTGC
TTTGTGTGTGAGACCAGGAGACGTCGTACTTCATCATATGGTGTGAGACATATGTTATTA
CTCATGTATCTTTATTGTCTCATTATCATCCAGTTTATTAGTAGCTTGTGAATTTATTTT
TTATGTTCCTGTATCTTCATGCTCACATGCAATGCCTTGCTTCCATGCTTAATGTTTATT
CAGTTTGTTGCAAGGAATGCCTTGTCTATAAAATCTAGGGGGTGCTTTTCTTTGGTTGTG
TGTTGGGCAGTCCTTTTTCTAAAGTATGCACACATCCAGGGGAGCCTGTCTCTAGTTTGT
AGATTTGGGGTTTGCATTTTTCTAAAGTTTCCTTTAGTGTAAATCATGTATTGTCATCAA
TCCACCAAAAAGGGAGAGATTGTTAAGGCATATTTCTCCTAAGTGGTTTTTGGTGATTGA
TGACAATGCANNNNNNNACTAATCGTGTGCATTGAGCATTTCGGATAATTCATGACTAGG
CACAAGACGATTCAATGTCCCTCGGAGTCTTTCAAAGACGATTGCTTTCTACATTTCTCT
TTGGTGGATTTGAGTCGTAGAAAAGTCATACTATTAAGAGGGGGTCCTCTTAGAAAAGGT
TTGGGCGAATTGCACCACCTTTCCCTTGCTTCAAATGGAGCCCCAACCATGTTTCCATGT
ATGTGCAAAAGGGCGAGCGGTAGTACCGCCCTCGGGGCGGTAGTAGTTTTTTACTACCGC
TCTGTGAGCGGTAGTACCGCTCTCTAGGCGGTAGTAGTTTTTTACTACCACTCCGTCAGA
CTTTTCGTCTCAGCAATGGTAGAGGCACGGTAGTATTTTCTTACTACTGTGGTTGGTGAG
CTGCCGTGCGATAGTACCGCTCTTAGGAGCGGTAGTACTGCTTGACTAGTGAAGTAAGTG
GGGGGTAACGGTTGGATTGTTCCTCCACTATATAAAGGTGTCTTCTTACCTAAGAAGGCC
ACCTCTTACGTCCCCAAGCTTCATTGTTGCTCCAAAGCTCATTCTTGCCCCGATCTCTCT
CCCTAGCCAANNAAACTTGTTGATTTCCTAGAGATTGGTTGAGAAGGCCCTAATTTACAA
TTCCACCAAGAGATATTTGATTACCCCCACTAATCCCTTGCGGATCTTGTTACTCTTGGA
TATTTGAGCACCCTTGACGGTTGAGGTCACCTCGAAGCCANNTTCCATTGTGGTGAAACT
TCGTGGTCTTGTTGGAAACCTCCAAGCTTTGTGTGGAGATAGCCCCAACCTTGTTAGTAA
AGGTTCAATCGACGTCTTCAAGGGCACCAATAGTGGAATCACGGTATCTCGCATTGTGTG
AGGGCATGAGGAGAATACGGTGGCCCTTAGTGGCTTCTTTGGAGCATTGTGTCTCCACAC
CACTTCCTGTCAAAGGGAATGAACTTCAGTAACACATCCTCATTTCCATCGGTTCCACTT
ACGGTTATCTCTTACCTTTACTTTGTACTTAATATTGTTGTTGTGTATTCCCTGCTTGCA
CTTTGTTGTTAGCATCATAGGTTGCTCACCTAGTTGTTCATATAGAGAATTAAAGAATAT
ATATATGATTAGAGTAACATAGTAGATACTATATCATGTTAAAAATATGCTACTTTGTGT
CATGCATGACAATAAATCAATAAATTTGATCATATATGATACTACTTTATAATATTATGC
ACTATTAAAATAGTATCATACACTAGTATCATATACACTAGTATCATATACATTAGTTTG
GATCTAATAAGAGGGGCCCTATGTCCAGTCTCCCCTTGATTTACATTAGTTTGATTCACC
TGCAGGGCTCATCATGTCGCCGACAAAAATATGGAATTTTCATTTGTCAGTTTAAGGCCA
TAGTCAATACACTATAGAATTTCATTCATCTCAATGTGCTTCGAAGAGGACTCATTGTCA
AGCAGCTAACTATCGAGTAGTTCCTAGAAATGAGCGCTACAATGGTTGTTATTGGTATTT
GTAGATACTACAAGAAAATCATTGCTTAAATGGCTGACTAGATTCAGTATAATAAAGGGG
GACACGAGAAGACATGTGTCTCCAAGATCGTTCATAGAGATCTCAAAGTAGTAGCATAGA
CCATTTGGTGACCGATGATTCCAATGGAAATTTAGGCTCAAGTGACCAGAGGGCTCGATG
ACATTTTAGCAAAAAAAAAAAGGATGCCCGTTTAGTTCAGAGTTCAATTCCAGCTCATGA
TTCAGATCGTCTGCTGGAGAAAGCAGAGGATACATGGATAGACGATGCAGGAAGATGCAC
AAGATACGTTGCCATTTTCCAATACATTCATGTAGGCAGATACATGTGGGGGTAATCCTG
CATATGGTTACAAAATATGGTGCAAACCAAACACACAATATTTCAAACGTGCAGCATCTT
GTATTAGACTGACAGACAGAACGAATCAATGGTTATTTGCTTTTGATCAAGTATGGCCAG
ATATTGTGGCTTGGAATAAAAAGAAGATGGATCTCCAAACAATCTTCTCCTGGCTCGTCA
ATCTAGGCTCCAGGCGGCAGACAGGGCGCCATCGATCGGCACCTGCTGTTGACTCATGAT
ATAGAGCCCACACAAACTCGTCACGATCAATTCATCAAAATTGAAACAAACAAAAAGGAG
AAAGAAATTGATTTTAAAAAGATGCGATCAGAGCCTGTCGGGATGTATGCGTGTCTTCAC
ATTGTGACATCAGGGGATTGACAGACTATCATACATAAACATCACCACCTCGCATCAAGC
AGAAACCAATCCATCGTCAAATCGAAACCAACCCATTAACGTGACTTCCTCTTGTCCGGG
TCAATGAATGAAACTCGATCATTGTTGATTTGAAACACGTTATTACCACTTGCCTACCAT
TACACATTACTATTGTTAATGCATCTTCTTTTAGAAGTAGCAGATGTAGTGCAGATATTG
CACTTCTGTATTCAGCTGAGCGACATTGCACATTACTATTGTTAATGCTCATATCTGCCG
GTTGTATAAATATTTGCTGTATAATGAATGGCAATGGCTTTTTCGGATAAGAGGCCTTGG
TTGAGCTTCTCATTTTTAGTTTGCTTGGCATTTCACAAAAGTATTCTCTTTGCTGTTGTC
AAAAAATTCAGAGAATAATTCAGTTTATGGGTGGGTAAAAACAACTTTACAAGTTACTTG
TCAGAAATCAAGTTAGTGGCAGTATACAAGGCATCTCTGTAAACGATTTACGGCACAGTG
GATGGACAAGTATGTTGCTAAAATTCCAAAGTTTAGATAATGAGAATGCTCAAAGCTGCA
ATGCTCATTCTCAGGCCTGAATTTGAGGGGGGCATCCAAGCCCGTTTCCAATGGAGAATT
AGGATCAAGTGAGCAAGCAGGGGAACTGGCGAGGTTGTGACGACTGACGACCATTAGCCC
ACGATTTTGGCACGAACCAGAGGGTTCAACGACATTTTAGCAAAAAAAAAATAACGATGC
CCATCTAGTTCAGAAGAGGGTGGCTTAATGCAAATATTCATTCCGTTCAATTTCGAAGTG
GATGATTCAGATCGTCTGCTGGAGAACGCAAAGGATACATGGATAGACGAAGCAGTTGGA
TGCACAATATATGTTCCAATTTTCCTATACGTTCATGCAGGCAGATACATTTGGCGGTAA
TCCTTTCATATGGTTACAAACTATGGTACAAAGCAAACAACCAACATCTCAACGTGTATT
AGACTGAAAGACCGGACAAATCAATGGTTATTTGATTTTGAACAAGTATGGCCAGATATT
GTGGCTTGGAATAAAAAGAAGATGGATCTCCAAACAATCTTCTCCTGGCTCGTCAATCTA
GGCTCCATGCGGCAGACAGGGCGCCATCGAGCGGCGCCTGCTGTTGACTCAAGATATAGA
GCCCACCCAAATTCATCCCGATCCGTTGATAAACTAACACACACATAAAACTAAACTAAA
CAGAGAAGAAAACAGGAGCGATCAGAGCCTGTCGGGATGTATGCGTGTCTTCACCTTGTG
ACATCAGGGGATTGACAGACTATCATACATAAACATCATCACCTCGCGTCAAATGACATC
CAATCCATCGTCAAATCAAAACCAATCAACACGGAAAACATCCAAGAATCAGATCGAGCT
CGGGGTGGCTCAGAACTTCTTAGAGGGTTGTGTTACCGACACTGGCGCATCCGCCTCCGG
CACAGGTTTCGTTCCTCATTGCCGACTGATGAAAGAAAAAGCAAAACCACCATTCCAGAT
CTGTTGATTCGAGGAGGAGGAAAGGTCAGAAATCTCGTGTGGAATTGAGATGTAATGCAC
ATGAATGCTTCTGCAACTCTTCAAAGAAGATCATCACGCCATTCCTCCCATGTCCCAACC
ATCAAATTCTCACCCACAAAACAAGAAAACAAATCAAGATCGAGGCAAGAAATCGGAAGA
ATCACAGCAAGTCGAAGAAAGCGGATTTCTTTTGGAAGGAAAAAAAAAGGAACAACGAGG
ATGAGAATCGGAGATTAGTTAGCCAAGCAAGAGATCCAGATGAGAACTTGGCGGCGGCTG
ACTGAAGAAGGAACGGAGGAACCCTAGCTTGGACTGGGCCAAACCGGTGTGCCCCGGCTC
TGTTTTTATAGACGGTCTCGGCGGCTAGCACGGGTCACTGACATGCGGGACCCACCAGCC
AGTCGATCGCGCACCGTCCACTCGCACACCAACGGCGGAGATGCGTCCTTTCTCTCTTGG
CCCTACCTTTGGTTGCTTGGTGGTGGCGCGGATAACTCGAGGGAGAGAGATTGAGAGATT
GAAGCGGCAATGGCGATGGCGATGCGGGCGGCAGCGGCCTTCTTCTCGCCCTCCGTCTCC
GTCTCCGTCTCCCCATCCACCTCCCCGAGCCCGAAGCAGCGCTCCTTCTTCTCCACCCGC
CGTATCCACAATCACCGTCGCCTCCGCGCCTTCCCAGGTCAGTGCCGGCCATCCCTCTCC
ATTGCAGATTCCCTTCACGCGGCAATAATCTTCTTCTTGACACCAATGGCCTCTGCCGCC
ATGGACTCGCAGCCACCGAGCTGACCCTCGAGGAGCTCAACCCCTCCGTCGCCCTGCTCG
TACGCTCTCCCCACCCACCCATCTCATTCTCACCTCAATCTTCTTCCTTCGTTCGCTGCT
GCTTGCTTGCGGTGGGTGTGCGCGCATGGCCGCAATCTCAGTTTTACACAAAATCTCAAC
TTTGTCCAGAGGAAGACCGCGGAGGCCGTCGGCGATTTCAGGAAGACGCCCATCTACATC
GTCGGTAATAATGCCCTTCTTTCTCTGTAAACTCTTGAACGCATCGCACGCAGTACCAGT
TCAGATTGGAACTGTTGTTGAATGCCAACCTGCGCTGATAACTGAACTGAACCGACGGCC
GGCCTGCAGGGACGGACTGCAATGCCAAGCGCAACATCGCCAAGCTGCTCGCCAACTCCA
TCATTTACCGCTACCTCTGCAGCGAGGACCTGCTCGAGGACGTCCTCGGCGGCAAGGACG
CCCTCGCCGCGTTCCGGGAGTCCGACGAGAAGGGCTACCTCGAAGTCGAGGTGCCCTCTC
CACACATACTATCTTTCCGAAGTTCATTCGTTCGTTCAATCCCCCTAACCAGTACGCCAT
TTGGATGACCTTGTGTCTGAATGCTACCTGAAACTAACTGTCGGCAGACCGAGGGGCTGA
AGCAGCTCACGTCCATGGGCAGCCTGGTGCTCTGCTGCGGCGATGGCGCCGTCATGAACT
CCACCAACCTGTATGTGTGCCTCTATCTCTTTTGTCACCAGCCATTCTGTGGGTGTGTAT
CCAATTAAGGTTTTCTGACTGATGTCTGTGTCTAATGATCTCAAGGGGGCTGCTGAGGCA
TGGAGTCTCCATCTGGATCGACGTCCCGCTTGAATTAGCCGTGAATGACATGTTGAAGAG
CAAGGGGGCGGCAGCTATTTCAGACCCTGATTCCTTTTCTCAGGTTCCTTTTCCCTTCTG
CAAATTACATCCTCCTCCTTATGGTTTTGTTATTCCTGTTATCTTGAGACGCGGTGACTT
TGATAGCCTTGCGCTGTTTACACTTGGATTACTGTGATCCAGATTCAGCAGACATACTGA
AAGGGTTTTGTTCTCTTTTGACTCTGCCTTGCTTCTTAAACAACAGTCTGGTTAATCCAT
CCGTCTCAAAACTACATCCAAATTTGGCCTGTAATGCAGCAAGTGTAAAAATTCAGAATG
TGGTGTTCATCATGATTATGTGCAGGCTGCATATGAATGGAGCATGCTTGTGCTCATGTG
ATCTTGCTTGTATACACCCTTCACATAAGAATTTTTTTCTTTTTCGAAAAAGGCCCTTCA
CATAAGATGGATTACAAAGCCTATAATACCTTGCATTAGCATTAAATTGGAGAATCTTTT
TGCTGAAACCCTGTTCTTTTTTACGTGTGCATCTCGATCTTAGCCTGAAAAAGGTGTCCA
TTATACCTACTGAGAGGTGATAGGCTTACCATCTATTGAATCACATTGGAGATATCATGT
CTGCAGGCAATGGCAAAGCTCCGTCAGCGTTATGATGATCTGAAGGAGCGCTATGCAGTT
TCTGATGTTACTGTTTCACTACAGAGTGAGCAGACAAGATCCAACTTCCTTTCTTCACTT
TGAACATAGTTGATCGATGTATTTTCTGCGGTTGGGGGGAACCCTATTGACATATTCTCC
AACTGAACACCTTCCAGATGTGGCTTCTCAGCTAGGCTACAGCAGCATCGACTCTTTGAG
CCTGGAGGACATGGTCGTTGAGGTACTAGACAGAACTGTAGCTACACAATTGGACACAAA
TTTAGGACTTTTTTGTGTGAACAACTTATCGTGAATATAGCTAATGGTGACGTTGAACAC
ATTTCAATTTTCCTTTTCCAGATTGTGAGTCGGATTGAGAAGCTGATCCAAGCAAAGGCA
ATGATGGAAGCTGCTGGGAAGCCTGAATGATTCGAGCACGGACTGAGGTCCGAGGAATCA
AGTTCGGTCGCTTGATTTCAATATTTTTGCGACATTCCATATACATAGTGTGTGCGTATG
AAGGCTTGAAGGCATTCGCCGTGTCGTGTAAATGAGTCTTTCACGACATTATAGTAACAC
AGTACTCCTCGCTGCAAGTTATTCATGCGGCCAGTTGTAAAATGTACATGGCTCAATGGC
CGAACATTAATCAGGAGATTATTTTTCCCAGTGAGTAAGAAAGAAGAAGAGGAGCACCAT
TTCACTCTTAATGGAAATCTTGTAGTATGCCAATCCCTTGTTTGCCTGATTTTTATGTCG
AATGATCTCAAGAGGGCTACTGAGGCATGGAGTCCCCATCTGGATCGATGTCATTTTCTC
ATTTTCTTCTTTCTCTTCATATCTTATCATTCATATTCTCTGTAGTAGATGCAATAACGG
GATAACCTAGATAGCCTTCTTGTAGTTAGAGCAACTCTAGCAGACTCGCATCCGTCCGGC
CCGCAAAACGTGTTTGCAGTTTGCGGAAAAACGTCTTTGCCGGCCGGCGTGCACGGCCAC
GGATGCAGAGCCCGCATAACGGACCAGTAAAAAACGGGCCGGCTCTGCGGGGTCTGATCT
GGCGCAGCTCCTCTCAATCTGGAAAACCTAAATGAGCGTGGCCGAAGTAAGCCGCAGCAC
TGTCTGCGTGCAGTCGTCGCACTGTATGAACGGCAACGGCGAGCCACGGAGCCGCTGCGC
GAGCGCCAAGCCCGGTGGACGACCGAACGAATCCATGCCCGATGAAGGACCCCGTCCCTG
CATGCGGTGATGCGCCCTTGCCGGGGGCTGCAGGAGATGCTTCCAGACCACTCCATTGCT
TGGCGCAACCACCGGCGGCCGGCAAAAGCCAAATCTGGCGGCCCCGCGATAAAGGTCCGT
AGATCCGCAAATCCGGCGAGCCGCCGGCGCAGGGGGGAGGGGAGGCCTCGTGCGTG