morexGenes - Barley RNA-seq Database

Contig contig_47984

Source Contig contig_47984

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_47984 (7708 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_47984

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63806	2	1471 bp	MLOC_63806.1	Available	Available	LOC_Os03g55050.1, FRAME:-2, EVALUE:0.0, 13103.m05980 protein UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
MLOC_63805	2	1860 bp	MLOC_63805.2	Available	Available	LOC_Os03g55050.1, FRAME:+1, EVALUE:0.0, 13103.m05980 protein UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed

CDS Structure of MLOC_63806

CDS Structure of MLOC_63805

Contig Sequence (7708 bp)

>contig_47984 7708 assembly3_WGSMorex_rbca.fasta
TATTCATGGTCTAATATATATATATGTACGCACATATAAAATATTCATATTGNNNNNNNN
NNNNNNNNNATGATGGAGAAGCGGGAGGAACTCCTCCGAACGGAATGCATAAGAGAACTT
CAAGAGGAATTTGCCGGATTTTTGCTCGATGAGGTCATAGATCCCAAAGGAAAATACCAC
TTCACCAATTAATGTATGCATGTAATTGATCCGCAAGTGGTATGAGAAATTGTATATATC
AAATTGTATATATATATATATGCATCTGTGTATGCATATATATATATGATGGTACGAGAT
ATTCTATGATATATGTACCAAATTCTATGATATGTTTGAAATGAAAAAGAATTAAGTGGA
AAACAGAAAATAAACAATAAACCCTAAAATCCCAAAACCCCAAATCACATAATCCTACTA
GTGACACAAAGGTGCAGCCGTGGATTATTGGGGTAACCACCAAGCACCGATCATGGATAT
AGCTTACTTACTACATGAGTGTTACGTTTATCTAGCAATATATTTTCTTGATGACAAACA
TGGTCGGCCCTACTATTGAGAGGCTCTAGTGTGAATGAGATACACTGACCTAACAACAAG
AACGGAGTAACATAAATATTTTCATCCATATCATTAAAATCATTATAAAATAAAGGCATA
AACATAAAAAATCAATTCACAGACAAAGTCTTAGTACGCAATGTATATATAATTGTATAA
TATAAATAATAATTATAAGATACACATGCTCAATCTAAACAACTATTGCATAAATACACC
GTTGGGGGAGGGGGGGGGGGGGCAACGCCCCCTGCCTATCCATTTATTAGCGTTGATTTT
AGGTTCTAAAATTATATATCTATAATCTATTTGCCCCTTATTATCGATGGTCGCATCTTT
ATCATGGCCTAGGGTCATCCCTGATGACGAAGCAGATCTAGTAACGCTAACGACAAAACA
AAGCTACGTAAGAGCCTGCACTGAAGACTGCCACCCCAATAAGAATGACTACAACGTTCC
TAGCTGTGACAAGAACATAGGCATCAACCCAAGAAAGGGAAGCTAACGTGGAGAGCGTGA
CGTTCCACACCTCAATGTGTCCGCAAAGAAGAAAAAGTAGAGTGTGTTGTAGATGAGCAT
GCTAGCGGTGCACACGGCCGGCAACACGTAGGCCGATGGAGGTGGCGGGTACATGACCAC
GGCGCAACAAACCGTGATGTTACGGAAGAAGGCCACCAACCCCAACACTTGTCGTCCACC
GCAAGAAAGCTCCTTGAGTCAACACACAAATCATTTGCATTCCAATGATTAGTTGTGGTT
GCGGGTTCAAAATTTGGCTACAATCATCCTCTTTTTTGTACAATATAAAGAGATCGAACT
ATAAAAGAATTACAGGTGAGAGAATCGATGCGTTTTGCATTGAGTCTCAAGGGTAAGAAG
CCTCTTAAAGATAAGAGGAAAATAATTCCTATCTAATCCGGGACGATCCTAACACGATAG
AGACAACAACTTGGTCCACACTCCACTCCACAACTTCATGAAAATTTATCCACGAGTCGC
ATGAGTCATTACCCGGATAAGCTTTTCTTGAGACAAACATGTGGTCGATTTTATTTTACT
TGAGGCGGGCAAACATGTGGTCATTTTGACTAGAGGTGTACTGATGCAATCCCTGATGCA
ACATCAATTGGTCTGGCACACCCTTATATGAACATGTGTGGGCATATGTACAACCCGATC
GTCTTCGTCCACGGTGACAAACTTTGCTCTTGCAAACTTGTGAGTCATATTCCATTCTAG
CGCGAACAACCTGAATGGCTGCTGCTGCTGCTCCTCCTCAACGACCTCGTGTCATGGTGC
TACCCTTTCCTGCACAGGGCCACGTGATCCCGCTCATGGCACTGTCCCGCAAGCTCGTCG
AGCACGGCTTGGAGATCGACTTCGTGAACACCGAGTTCAACCACGGCCGCGTCCTCCAAG
CCTTAGCAGAAGACGGAGCGATCCCAGGAGGAATCCACATGCTGTCCGTTCCGGACGGCC
TGGGGCCTGCCGACGACCACACGGACATCGGCGCGCTGGTCAAGGGCCTGCCGGCCGCCA
TGTCCGGCCGCCTAGAGGAGATGATGCGGTCGAGGAAGACGGAGTGGATGATAGCGGACG
TGTCCATGAGCTGGGCCCTGGAGCTGGCCGCCACGTCGGGCGTCCGCGTCGCCTTGTTCT
CGACGTACTCTGCGGCCGTTTTCGCGCTCAGGATGAAGCTCCCGAAGCTGATAGAGGACG
GCGTTGTTGATGAAAGTGGTAAGAGCAAATCAAAATTTCCATGTCACTTGTTATTTTCCT
ACTTTTCTCGGCATTTTCCATTTGGACTGGACACCATGAACATGTACACCACGTTTGCAG
GGAACGTGAAGAGGCACGAGAGGGTCCAACTGACGCCGCCGGTTGACGCGGCAGAGATCC
CTTGGGTCAGCCTGGGCAGCACCCCGGAGAGGCGAAGAACCAACATCCAGAACGTCCTCA
GGACCAACCGGTTGATGCCGCTTGCTGAGAAGATCATCTGCAACACTTCCATGGAGATGG
AACCCGACGCTCTATCCCTGCTCCCAAACGCGCTGCCGCTCGGCCCGCTGGTAGCGCCGA
CGTCGAGGCCGGCAGGAAATTTCCTGCCCGAAGACCTGACCTGCCTCACCTGGCTCGACG
CACAGGCCCCCGGCTCCGTAGTCTACGTCGCCTTCGGGAGCTCCGGCGTCTTGGACACGA
AGCAGTTCCAAGAGCTCGCCGACGGTCTCGCGCTCTCCGGCCGGCCGTTCCTGTGGGTCG
TCCGGCCAAACTTCACCACCGGCACCACAGAAGGTTGGTTCGACGCGTTCAGGCGCCGCG
TCGAGGGAAAGGGTCTGATCGTCGGCTGGGCGCCGCAGCAGCTCGTGCTCTCGCACCGCG
CCGTGGCCTGCTTCGTGTCGCACTGCGGGTGGAACTCGACCATGGAAGGCATGCTGCACG
GCGTGCCATTCCTGTGCTGGCCCTACTTCGCCGACCAGTTCGCCAACCAGAGCTACTTGT
GCAACGTGTGGGGCACGGGCATGAAGCTCCGGCGAGACGAGCGAGGGGTCGTCGCCAAGG
AGGAGATCGAGAGCATGGTGGCGCGGCTGCTCGGCGACGAGGGGGTCAAGGCGAGGGCGG
CGACGTGGAAGGACAAGGCGTGGGCGAGCGTTGCAGAGGGAGGGTGCTCCCATGAGTACC
TTCTCAAGCTTGTGAGCTTGCTAGGAGAGGTGGGATCTCATCCCGTCACTGCATGAATCA
CGACACAGAGACACCGGACGGCTCCTGTCATTTACGAGAAAACTTAAACAGATTAGATTT
AGCATAAAAAAAGCGGAGCGACTAAAACTCAGTCGATTGATTTCTATCCAAGTCTCAGTC
GACGCTTTCATTGAATATTCTCTATGCTAGCTGCCTGTCACATTTGAATCGGCCTGTTAG
AATGGTGTGGCCGGCCTGCTTCTTTTTATTTTTGTGTTAGCCGGCGGTCAGTGGGGGAGT
CAGGATTAGAGCAAGCCCTGGATCTAAAAAAAATCCTTGAAAGGAAAAAACTTAACGTCC
GTAAGGCTTTTAGCTACCATAAAAGATACCCCGTATGAAATATGGCTCAATTGCACATTT
GTTTTAAAATTTAAACTCAATGCTTAACGACACAACAAAGTATACAAAAATATGTGAAAA
ACTACAAAGAATATTATGAGATAAAATGAGTACCAAATCAACGGTTTGCTTCATCAGTGC
CTCACATAATCTCATCCATGTTGGAAGAAGAGGCAACACCTTGAAGACATAAAGAGAAAA
GTTTCATAAGACAAGGCATAAAAAATAAGTGAAACAATTATCATTGATTTAAATCTAAAA
ACTTACCACTTCGACGAGGTAAAAATTCTTTACGACACATATATGATTGAAATCGATATA
CAATATCATCATCAAGTACTTGCAAATACATCTCGCTCAATGTAGCAAACCATCCTATAA
TTAAGCCAATCATCACTCATCCTATTCCTCAACTCTGTCTTGATAATACTCATAGCTGAG
AAAGCTCTTTCCACTGATGTGGTTGCAACAGGCAAAATCGATGTCAACTCAATGATGATA
TTATCGTGTTACCCATTCACCTCTCCTTCAAGCAAACAAGCGGCTAGAGTTTCAGCCTCC
CGTCGGTGCCGTCGTTGATTTGCCGCGTCTCCTACAACCTTAGTGCCATGGGACGCGATA
GATTATGATTCTTGCCGACGGGAGGGCTTTGCTTTTTTTTTTAAGTTTTACATTTGTGTT
CTCTTCAAGAGGACAAGACGACCAGGACTCCTTAAAATCGAGTAAATTTCTTTCAGTGTA
GCCCCGTTTCGATGATGTGTCTAGCACTAGTGATTAGGATCCGTCATTGCGGACCGTTTG
AGAGGAAACTGTCCGCACCATATCTTCTTTTCAAAATTTAAAAAATTCTTATGTCATGTG
AACATCACATCCATCTTAAAAAGAAAAAATAAACCTAAAAACATTTTTGAAAATAAAAAG
AAAAACTTCTCACTTCCATTTTGAAAATAACTCTAAAAATCTAAAAAAATCTCACTGCGA
CCAACCAGCATGCGTCACATGACGTAGCTGGTTGTCCACCATTCTAACGATGCTTAATGT
GTGCGATGTTTAATGTGTTTGATTGTGGATGGGCGCCTGGAGGTGCGGCTGCGCCAGATT
CTGTATGATTCAATCGCTCGGATTCAGTCTTTATTCGTCTATACGTTTGATTTCTTCCCC
GTGCATGGGATTGCACAACATTTTGGAGGATACCGCTGTAAAAAAAATATACGCCCATCG
AAAGATCAATCATTGTTGTCTTCAATTGATATTTGGGCGGACCCGTGGATCCCAACAAGC
CATGATCGCAACGTAATGACCCCTAGGGATAGAAAGTTGAAGACCTGATCGATCCAATAT
CAGGGAATTGGGATGAGCAGTTGGTGTGTGGTATTTTTTGGTCGGTCGATGCGGAAAGAA
TCTTACAAATTCCGTTATCATCTCATCATCAAAGTGACTTTATATCATGGCATTAATCGA
AGTCATGTTGTTTTGCTGTTCGTGTGAGAATAGAAAAGCTTGAAGCGTATGCGTTAACAG
GGACGCGTGCGTGTTAATAAAGGCACAAGGCCAAGAAGATTACAACAGGGAGTTAGGATC
TATCTTATCTACAAGTTAAACACACGAGATAGATCCTAACAACACATCCTTAGTTTAAAC
CAACACACGCATGCCTACAACGTGATACACATGGTTTATACATATACCATGTGTACAGGG
ATATACAATGTCTAACAGTTCGTTCTGCATATTAAAAAATAATCATTATTGTCTTAGCAA
GCTGACAAGCTTGAGCAAGTTCCCATGCGAGGACCCTCCCTCTCGGATGCTGCCCCGTGC
GACGTCCTTCCACGTCGCCACCCTCGACTTGACCCCCTCGTCACCGAGGAGCCACGCGAC
CTTGCTCTCGATCTCCTCCTTGGCAACGACCCCTCGCTCGTCTCGCCGGAGCTTGGCGCC
GGTGCCCCACACGTTGCACGCGTAGCTCTGGTTGCAGAACTGGTCGGCGAAGTAGGGCCA
GCACAGGAACGGCACGCCGTGCAGCACGCCCTCCATGGTCGAGTTCCACCCGCAGTGCGA
CACGAAGCAGGCCACGGCCGGGTGCGAGAGCACGCGCTGCTGCGGCGCCCAGCCCACGAC
CAGCCCCTTCCCCTCCACGCGGCGCTTGAACGCGTCGAGGTCGAACCGATCTTGACCGGC
TCCGGTGGTGAAGTTTGGCCGGACCACCAACAGGAACGGCCGGCCGGAGAGCTCGAGCCC
GTCGGCGAGCTCTTGGAACTGGGTCGCGTCCAAGAAGCCGGAGCTGCCGAAGGCCACGTA
GACGACGGTGCCTGGGGGCTGCGCGTCGAGCCAGGCGAGGCAGGCGAGGTCTTCGGCCAG
GAAGTGTCCCGCCGGCCTCGACGTGGGCGCTACCAGCGGGCCGAGAGGCAGCGCGTTGGG
GAGCAGAGGCAGAGCGTCGGGTTCCAACTCCATGGAAGTGTTGCAGATGACCACCTCGGC
GAGTGGCATCGACAGGTTGGTCTTGAGGACGTTCTGGATGTTGGTTCTGCGCCTCTCCGG
GGCGCTGGTGCTGGCCAGGCTGATCCAGGGGATCTCCGCCGGATCAATGGGCGGCACCAT
TTGGATCTTCCCCTGCCCCTTCACATTCCCTAAATAAGCTCCACATTCTTATTTCTTATT
CGGCCTTAACCAAATGGAGAAGAGAAACGTAACAAGTTCCATGGAGATGCTTGATTTGTT
CTTACCATTTTCGTCGAGCACACCATCCTCTATCAATCTGGGGAGGTTCATCCTGAGAGA
AAACACGGCCGCGGAATAGGTCGAGAAGGAGGCAACACGGGCACCCGCCGTGGTGGCCAG
CTCCAGTGCCCAGCTCATGGATACATCCACGATCACCCACTTGATCTTCCTGGATCGGAT
CATCTCCTCGAGGCGGCCGGACATGGCGGCCGGCAAGTCCTTGACAAACTTGCCGATGTC
CGCGTGGTCGTCCCCGGGCCCCAGGCCGTCCGGAACAGAGAGCATGTGTATCCCTTGAGG
AATCGCTCCCTTCTCTGCCATTGACCCGATGACGAGGTCGTGGTTGAACTCGGTGTTCAC
GAAGTCGACCTCGACGCCGTGTCCGGCGAGCTTGCGAGACAGCTCCATGAGTGGGATCAC
ATGGCCCTGCGCGGGGAAGGGCAGCACCATCACACGAGCTAGAGTAGCAGCAGCAGCCGC
ATCCGCCATGGAGCTTGTCTAGCACTAGAATAATAGTGCGTGAGCTCAAGAAGTTTGTAC
AAAGTTCAAAGCTTGACACTTCGTGTCCGTGTGGACAGAGACAGGCTCATCACGTGAGCA
TATTTGAAGGAGCGCACCAAATTATTTGACGTTCGTCACTGATTGCGTCAGCAGATTCCC
AGTCTGTTGACCATATGATCATCTTTAATTAAAAAGAGGTTATCTTATGGGGTTTTCTTT
AAAAGAACTTTTGATCTATTCATCATCATGACAGCAAAACGTAGACCACCTAACAACGAC
TACACGCACTCAAGTAAATCGAAAGTGTATTGCGGTTATCACCCCTACCCTGCTAGACCC
AGAGAAAAGTTTTGTATTAGACAGTATGAAAGCCGTCGTGCTAAGCCTGATAGGCCGGTG
CACCGGAGCAACAACCGTTGTCAATGAAGAAAAGCATAGGTCGAAAGAATTTAACCTAAA
AACACATACGCTATCAAAATGGATACAAACCCAACACCTGGGTTCGAATCCTCACGAAGG
CGAATTTAGGTTTTCATTTATTCTTGAGGACCGAACTTTTTCGATAGTCATGCATTTATT
GAGGAATAGGCTTGGTATAAACGAGACTAAAAAGTCCTAGTACTCATACTTAAGGCCGTG
TGCATCCCTATTTGGTACAGAGGTCGGGAAAGTGAAATCTCATCCCCCCAAACAAAAAAA
ATTAAGCAAAGGGGGTCTTGACTCATTAGTTAGGCATGCTGTTGTGCAACCTAACACTAG
TGGAAAACGGGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCGGGACTAA
AGGCCCAGCCACGTCGCCCCAATTCTCA