morexGenes - Barley RNA-seq Database

Contig contig_47947

Source Contig contig_47947

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_47947 (4757 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_47947

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63762	3	2031 bp	None	Available	Available	None
MLOC_63761	1	801 bp	AK375808	Available	Available	None

CDS Structure of MLOC_63762

CDS Structure of MLOC_63761

Contig Sequence (4757 bp)

>contig_47947 4757 assembly3_WGSMorex_rbca.fasta
TGACAGCCACAAGCATTCCAAACCATCAAGTTAGCAAGATATAATGAAACTACACGAGAT
TNTAAGCAAGTTTCATATATGACACTTTCCAAGCGGAGCAACGGTCCAACCATTACAAGC
AAAACAAGAATAACTACAATCTGCCAGAAATAGCAACAAGGCATTTTCTACATCCCAAAA
CAGCAAGCTACATAATTCTAAAATGTTCAAACAAGACATGTGGCAGTAGTGGTCAAGATG
CACAACAACACCCTACTAAATACAACTATCATGGAAGCATGTATCACTAGGAAAAGAACT
CATAAAATGGCAAGTTGCATACTGTTTCACATTAGTGAAAATAATAGTTTTGAGAGTGCA
GTTTTTAACCAGATGGCATATTGGCAGCAGTAAAACTATATTCTACGGGGCTTAGAATGG
CATGAAAACTAATAGCATGCTAGAGAATCTTAAGAACTCAAATAACTCCATTGCACCAAT
CCCAAAGGGGTTGTAGATCACTAGCAAAACACATGGCAAGACAGCAACACAATATTAAAG
ATTCCATACTTAGAAATATTTCAGCATCTCATATCAGCACTATTTCTAGCATGTTGGCAA
CAATAAAAACAACATCTAAACATGGATTTCTATACAACCAAAAATACGAGGGGCTAGCAT
ACATATCCAAGGGCAGATCTCAAGTTCAAGATTATTTCATATCATGCACGGATTAAATCA
CATAGAATAAACAGAAGGGCAACATGGCGAAATATCATGCACGCTAACTTGCTCAAAAGA
CAAAAATAAATGCACAGATTAATTCTATGGATTTTTCTACCCCNNNNNNNNATATAATAT
GTGGGGTTTTAGATAAAAATAATGACACCACATAAATGCGAGAATATGACATAAACCTGA
CAGAGCAAACTATTTATGCCACCCACATGCAAACAACAAGATGGTAATTTTTACCAAGCA
TGGAAATGTGTTGCAAACAATATGAACATTTTACATACTAGGTTTGAGCAATTCAGATGC
ACGCTTAAATATCAACGGAATAAAACACTTAATATCACACCATGCAAATCTATGCAAACA
ACAAGTTAAATAGTTTTAAATATGCATGCAAGTTGGCAAATATTAATCTACATGAAATTG
TACACGATTTACATATAAAACTTATCTCGATCTGACGCACGATTTAAAAGATACGACCAT
TTTAATATATGCATTTTTTCTGGAATTAAGTAACCACATGTTAATTAAAAATAATGGCTA
CGGGCCGAATCTGGTAATTGGGCTGCAATAGAGGTGGCGCAACATAGCTAAATCGCGTCA
AGGACGGGGGATAGACGCTCGGGTGCTCACGAGAGGGCCACTTGGGCCAGCCTCCTGGAT
TGGCTCGGGCAGAGGCAGACTGGGCCGGCTGGCGCGGTCAGCGGCCCATACGGGTGCTAG
GCGGATGATCGTTGGGCCTGGCCCACGGTGCTCGTGCGGGAGGAGCGGTTGGTGGCGATG
GCGCACTCGGTGTTCCTGATTCGATCTAGATCGGGGTCGAGCGGAGGCGGGGTTGCGGGA
TTCTGACGGGGCGACGACAAGCGGTAGCGAGATCCAGCATCCGGGCCCTCGGTGACCGGT
GGCGCTGCACATGGGGCCAGATCTCCATGGTGGCGGGTTTCGGCGAGCTCGAGCCATGAC
TGCATGGCTCCGACCGGTGAGGGCGGAGGCTGAGGTGCTCGGGCGGCGTGGTGCTGGAGG
CTCTACAAGAAATATGCTAACTTGCAACCTTCAATATTGGTTACCAAATAGTCATTAATT
TGCATTTGCGGCCTTTTTATGACCAAAACCAGACGGTCAAAAGCTGAGCGTCTCTAATAA
ACTAAAACGACCTTTCTTCTGGATTGGTCATAGACATTTACGATCAAAAAAGGTCGTAAA
TTAGAATCAGTCTGGTTCATTTCGGTCGTCTACATGGGCCAAGCCCAATANNNNNNCCCA
TTAAATGTTTTTTCTCTTTATTTTTTCTTAGCTGGATGTGTCGGGCCCAATAATTTGGCA
TTTTATTTTCTGGGATGGAGCCCGGTCCAATTCGGTGTTTTACATGGGCCGAGCCCAACA
ATTTAGTCTTTTTACCTTTTTCTATTTATTTTGGTCAACTACATGGGTGAGGTCCAACAT
TTTAGCCTTTTTCGGGCTATGGCCTTTGTTTTTCTTTTTTAATGCATCTTAATTATGATG
TTCTCGTAAAGGGGTCCCAAATGTGAAATTCTAGTTTGTAGGTCCTTGTTGTCAAGGTCA
TGTTCTTCATATTTCAATAAATATGACGTTAACTAAACAAACAGTATTTAAATCAAAATA
GACAAAACACAGACGCAATACTTCAAATTACAACAAGAAGCAATATAATCTGCTACATCA
TATAACGCATATACAAATGTGATCAGCATGAAGTTTACAATCAGATAACAACAAGAAGCA
ATCTTCTCTACAAGTTTACAATCATATTACATAGATACAAATAGGATCAACTTAAAGGGC
TTCATTACTCCGAGAACTATGCTTCTTCCGATTTCTTTGTCCTGATGCTCACGAAGAAAC
ATGAAACGCCAACATCTGCACGTTATAGAAAAAATAGTTAGGAACAAAATAAAAGTAAAT
CTAACAGCATATTTAACAATAAATAACAGAATGATGCAATAACTTGCTGCATTGGTCCCT
AAAATAAATTTTTTGCATTGTTGTAACATGTCTTCCATGGACTAATTATTATTCCTTCAT
CTCAACTGTTCTTGAAATATGAAGATAATCTACAAGGAACTTGACCCAATGCAACGCACC
ACTGTTGTTCTCATTTTTCATTGCTCCCGGGTGTTCACTTAGGATTCTAGCATTCAGGGG
TCATTTTTTATTAACTATTTTTAAGCCTGTAAAACTCCCCTAGTCTAGAGCATCATAATT
TTGCTGATAATCTAGTTAATAAAAAACTGCAGGATTAAGATGTGGCTGCCACTGTCAAGA
GTTGGCGTGCACTGGCGATTCAACAACTATAATCATGCTCAAGCAATATATATATATATT
GCAGAAGCAAAAAAAGAGCAAAAATGTGCATATGACATGCTGATTACATATAACAACTAT
CAAGAACCACATGATGATTTGGCCAATAAAGATCATTCATATCACAAGTTAGACTACAAG
TATAATTTACTATCTGCACTGCAGATAAACTTGCATGACACGAGGAACAACAACCATATT
CATACCTAACAAAACTGCATCAGCCAAAATGTTAAACTAGAGCACAAACACAGTGTTTGC
TCAAAAACAAGTTTTAACTCCAGATGTGAACAATTTGTCCTACTAGTGAAACAGTGGGAA
TAAACATGAGGATTTCATTTCATCTAACATTTCTTGATAGATGGACTCCACGCATAGGGA
GGCAAACACATCGAAACAGCTGGGCGGTCAACGGATTTGAGAGCAGACAGAACAACATCC
AAACAGAGCAGAACATGAATCGCTACTCACTAACTTCAATTCCACCAACAATCACATGAA
AAATCATCTTGGAGGGGGAAGGGGTGTGGTGAACCGAGGGAAATCTCACCGGTGAGCACG
GCGGCAATGATGTCATCGCGGCCGAAGGCCGAAGGCGTTCTTCTAGTTGAGCCCCTAGAT
GACTTCACAGAGAAGGGGGGCCAACCGAAATCGGGCCACGGCGTTAGATAGAGTAGCAGG
AGGAAGGAGGCCCGACGGAGGAGGGACGGGCAGGAGGGCGTGGTGCTTACTGATGGGGTG
CAGAGCATTGACCGGCGGGTTGCAGATGGTGGCGAGCGCGTCGAGCGCCGTGTGCGTGAG
GTGGGCGGCGCGCTCCGGCCTCTCATGCACCACCTAGTTCCGATCCAGATGGATATCCCT
CCTAGTGAGGCTCGCGCACCACCATCCGGGCGCTCGTGCGAGGTGGGCTGAGAGATGGAG
GTGAGGTGGGGGTGGCGGATCCGGTCGAAGAAGGGCAGAGAGGCCACCGGCGACGCCCCG
CCCGAACCCTAGCCCCGAATGGATCAGGATGGATCTCCCTCCCTCTAGTTCTTCTCTCCC
TTCTAGTGAGGGAAGGGGAGGGGCGAGAGGAGGAGGGCGTGGGGGAGGCCGTGGGCGAGA
GGAGGAGGGAGGTGGCAAGCTCCTCAGAAGGGAGGTGACGGCCGTGATCTCGAAGGGAGG
AGGAGAGCTCTCGCTCTAGCTCTCTCTCTCCATTGGGCGAGACAGGGAGGGAGAGCGAGG
GGTTGGGTTGACCCGTGCGCTACTTGCTGTTCGGTGGGCTCAACCGGTTTGGACACAATG
ACATGTGGGGATCAGGCTGAGATGTGTGGTGGGTGTGGGACGTGGGGCTGTCCGCCACGT
CATCGATCCTAGAGAGTTTGGTTCCACCCAATATGAAAGCTTCAAATAAGTTGTGTTTCT
TTATACTATTACTTTTGCAAAAGTAAACATGTTAAATTTAGTAAAAAGTTTCAAAAAAAT
TCCACGCCTTTTAGAGACTATAACCAATACCACACCAAATTTCATAAACATGAGAGCTTG
TTTACGTTTTCAAATAATATGAATGGTCATACATGTCGTTTTGACCGCATTTTGAAATGG
ACTTGAAAAATTCAAAAAAAAAATCAAGAAATTGGAAAAATTTCGCATTGTGTCATTGTA
TGTGACCAAGTTATCAGGAAAAATAATAAACTTGTAATACACTGTCGGGACCCCGATCCT
GAGTCATAAGAACCTAG