Map Locations of contig_47944 (8941 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_47944

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63758 1 466 bp MLOC_63758.1 Available Available None
MLOC_63759 1 487 bp MLOC_63759.1 Available Available None
MLOC_63760 1 3032 bp MLOC_63760.1 Available Available LOC_Os12g37840.1, FRAME:-1, EVALUE:0.0, 13112.m03895 protein boron transporter protein, putative, expressed





CDS Structure of MLOC_63758






CDS Structure of MLOC_63759






CDS Structure of MLOC_63760






Contig Sequence (8941 bp)

>contig_47944 8941 assembly3_WGSMorex_rbca.fasta
TGTGTGGGGGGGGGGGGGGGGGAAGCTAATCGTTCGAAGCTGTATAGGCGTGGTCACCTA
ATCGCTGTTGTCCCCCCTTGGATTCGTTCCTGGTTCCAGGAGAACTAACAGTCTGGTCGC
TCCATCGTCAGTTCCTGTGCCACTTAAGCATCTGTACATAGATTTTGAGTTGCTTACCAT
TGTTTTCTTGTAATGAAAACTGCTCCAAGGAATCAACGTTCTTTGGAAGCATAACATGTA
TAAGAGGTTCTATTGTTTTCAGGCACTTTATACTGATGTTAGTAAAATACGTTGCACCTG
GAATATGCAAATTGTGTTTTCATTTACAAGATGGAGAACCAGCTCCACAGTAGAATAAAA
GACCATCACAAATTAGAACTAATAAATCCTGTTTACTCTTGATGTTATGGCATATTTGTG
TAACTTTATGAAGGTGCATGTTTGACTCAGTTGTTGTATTTTATGACTCAGCAACATAAT
ACAGGGCTTCTTGTTTCCATGGTGAGGGAACAGTTCAAGAAAAACATGCATGAAACTGAT
CCAGAGAAGATACAGAAAATGAAGGATGAGTAAGTTACTGCTCCGTGGGCACCTTCAACT
TTTGTCTGTCTTACCTTTTTATTCTCGTTGGAACATACATTCTGAAATTATATCTTGCTA
TGCAGTGCGGCACGGGGCCTTATCAATCACATAATATATGAATCCGAGAAGATGACGGGG
CGTAAATTCTCAGGTTAAGAAAGTTGAAAGTAGACTATCGGCATATCCTGTATGAATTGA
ACAGTGGCTTGATCCTATGGCTGTTGAATTGTTTTTCTCTTCCGACACAAGGACCATCTA
ATGCTTTTATTTGTTGTTGACTTAATAAAGCAGTGATTTTTCATCAGTTGCATTTTACTG
TGCTTCTGGATGTAATCGACCCATACATGCTAAGCGCTAGCTGTTTTGTTGAGGTGTAAA
TCTTCAGCAATTTTAAATGCTCCAATCTGTGTGAAAACAGATGTGTTTCTTGGTTTTTCT
TCTTCTGATAATGTATTGAGACATGTTCATCGGTTCCATTACCATGGAGCTGACTAGGTC
ACAAGTTTGCAAAACCGGAAATATCCGTGCCAGTGTTTTTTCTCTGTTTTTTTTGGACAA
TTGAAGTTTGAATTTTGCAATCACCTGAAACTCCCAAGGCTTTTCGAGGATCTCACTGGA
TGGTCTGCAGTATACTGTCTACACAACTAAAAAACTCATGACTACGAAATGCCAGATTAT
AACACTGAAGATTGCTGTCGCCTTCAGTTTATTCTTTCTCCGTAAAAAGCAAGGGAATCA
CTCTTACCAAGAAGTTTGACTTACTGGAGTAACAGGATGCATCCCAATTATTCATGGTCA
CATTTGTAGATCCTGGATGATGCATCTGCCCCTCTGGACCTAACATGAACGGATATGATA
TCTCAGCTTTCAGCTGAAGCAGCTACAACCCTATGGGTGGTATTTTGTCACATTGCTCTC
CAGAATCCGGAAAAGCGCGACAAAACGGACGGCATTGCGTCAAAGAGATGAGAGGAAAGG
AACTGATGAGGATGATGGGTTCAGAGAGCCGGGGCCAGTTCAGGAATTCCCTGCACTGCA
GGGTGCGAAACACCACTTACTGTCTGCAGGTCAAATGATGGTGAAGGAACACCCATGCCT
GACAAAAGATTGTCATCCAGACATCACCCAAAGGACCTCAAGGATGGACATCCTTCAACC
TTCCTCTTCCGCCATGCCGACGAACTCCAACCACTCCTTTCCGGCACGGGCTCATCACCC
GTGAGGTCCATCCGATCACTAGCCCTAGCTCACGGGTTGTCGAGGGAATCATCGGTTGAG
GAAAAGGGCGACGGCGACCATGATTGTCGACAATTGGGGGGCGTCGTCTAGTCCAGCGGA
ATGACAAGGCGGCGGCAGCAGCAGCAGCAGCTCCTATGAGCCTATGACCTGGACTGCATA
CAGATGAACTCTCTGGTGGCTATGGTACCCCTGGTTTCAGTAGGTCAATGCTCCATGACC
AGTGCAGTGCAATGTCTTCTAAAGTTGGAATCATGGCTGCCGTTGAAAGAGGGATGCCAG
CCCGGTAGCTTTCTGCCTACTGCAGCCTGCAGGCATGTGTTGCAGGTTGAAAGAGCTGTT
GCTTGAATTCCCTCCTGATCTTGGCATCTTTCCCTCTATAGCAAACATGGACAAGTACAA
TTAAGGCACTGTTCAGCAGCTGTACTCGGTAGTTGGCTTTGCAACAGCACCACCACACCA
CAGATCATACCTATCTACCATGTTCTGGTGCATGTACCAGTAAATTGCTGGTGAAATCAG
CATGGCCTGCTCTACCAATAGGCTCAGATTGTCAGGCAATTGGTATCTCCCTGTGCAATC
TTCTTTCTGTCGAAATCAGTCATGCCTCAACTTATCTTGTTTTCCGCATGCGTGTCACAC
GGAGTCCTCGAGTCGGCAAGGGTATTGGCCAGGCTGCAAATTTTCCTATAAATTTTACAC
AGTTGCCTCAACTCTCTCAACTTTCAGTTCATTGAATTTGACGCGATTTGCGTTTCGCAC
AGGACACTTGGGAAGAACTTTGCATTCTGAATTAAGCGGGGTTTCAGCACCCATTTGAAG
CAACGTTGTCGCAATTCAAGTAATATTTCCATCCATCAAGTGGATCTCATTCAATAGCTT
GAGCTGTTAGATTACAAATATATATTGTTTGTAAAAACTTGAACTTGTCACTGTTCACCA
TTTTAATCAGCAAAAAATGTACAGTACTCAGAAGGTAATAGGATCAGTTAAGTGTCATAT
TCAACTGGCAAGTGGTAGCAAAATACTCCCCTTGTCCCAAAATAACTGTCTCAACATTGT
ACTAGCTTATTTACAAAATTATACTAAGCTTAAGACACTTATTTTGAGATGGAGGGAGTA
ATAGGCCTCCACAGCACTCATACTTAAGTTCAACAAATATGCAAACAGAAATGATGCTCA
TCACTCACCAATTTGGTGTAAAAATCAAAGAATAATATGAACAATTTGTAGTTACGTAGA
AAAGTGAGACTCGAAAAAGCTTCAAAGTAGACGCTATAATATTCTACTCATTCAGAGATT
ACACATACAGTACTCCCTTGGATCAGGAGGCTACAGATAGATACACATCAGCCTATTTTC
ATACTTCATCACTGGCCATCATATAGTGGCATCATACCGCATCAGTAGACATCTTATATT
AGACTGATGCTCGAGTTATCGATATAATTTATTTCCAGCAGCGCCATAGCTTATATGTGC
AATGCAGCATCACTGCTTCACTTTGGTGTTGAGCCTTCACCGAGCTTGGATGGTCGGGCC
TCTCCCGTCCGTGGACTGTCTCGCCCCCCTAGAGGGCTGCGTTCATGCCTCAGCTCGGTG
ATGCGAGGGCTGTAGGCCTTCTCAGAAATACAAGGACTGCGGATGCCTTTCAGTTCTGTG
ACAGGAGTGCCACCTGAGCTGGTGATCTTCGGACTATTCAGGCGCTTGATCTCACCGCGA
CTTCTGGTGACCATGTCATCAAGGATCTCTGCGCTCTGGGTGTGTCCCAATGCAACATCA
ATATCTTGCTGAAATTTACATAAGTGAGTGTCAAGCTAGTGTAACAGGATTAAAATTGTT
CAGCCGTCATAAGCTAAACCTTACAAAATGGCATGGTGATATGCAAGGCTGCTTTTCAGG
ACAGATCAAGAGTTGATGGACTCACCGCAGCAAGGTTGAATGGTATAGCCGGTGATTCCT
CATACTCCGCTGCGTCCAGGTCATTGAGATGTGCACCTTTGAAGAGCTTTGGGAGGATAT
ACTGCCTGACTGGAACCAGGAGCATGATCATGAGGGGGAAAAGAACCCCAGCTATCGGGA
TCCATGTGATCCCAAAGCAAACAAGCAGATATGTTGTCTGGAAAAGTGTGAACATGGCTA
TCGTCTTGAATGGCACGGTCTCGACAAATGTTGTGTGGTACTCTTCTAGCACCCTGCAAA
GATTGGTAAACAGTAAGCATTTAAGTCTCGCACGGGGGCTGCTGATTACTAGACTACAAA
CAATTTTACATATTTGATTTTACTGCTGTATATATAATAATACGATTTATTGTTTCCATC
AGAGTCAGATTATGCATCCGTGTGTACTTCCATACATGTGTGCAGTAGCATGTTCAGATT
TCCTGACTTTACAGTAACAAAACGAGTGAAACTTACTTGTATCTTCTGCTGGGAGCAGTG
AAGAGCAGCAATATCCGTTCCCAGAACTGGTTACCTGGCAAGCTCTCAATTGCCATGAAG
GCAAAATAGCCCCAGAGGACAGCCGTGGGGATCTTCTTAAGCAGCGGCATAGCGGCAATA
CAGCCCCCAACCATCACAGCCTGTAGAAAGTTGCTCAACCTTTGCTCCTTGACCTCCATA
GGCAGCAGATCATCAATCTCTTTCTCTATGTCAAAGATTGTCTCGTCAACCGGTGCATCG
AAGTTACCCATGCTTGATGCTAACTGGACAGTGGAGTCCTTAAGCTCGTTTAAGCCCTAC
ATTTTGTGAAAATGGCACTGTAATATCAGATTCATGCACTATACTACTTCTATATACAAT
ACCGTGACAATTTAATTTCAATCAGATCCGGGCGTACTTTGACGGACTGTTGCTGGTGGA
TCAGCGGTGTCTGAATCTGATGATAAGCGTCCTGCATGCTGTTGTACAGTTGGCTCAAGC
TAGCGTTCTGGCGCATGCTTTGCCGTGCCGTGGCCACTAGTCGGTTACGGAGTATCTGTA
GAGAAATTTATAGCCATTTTAATGGAAGTGTCAAGTATTGATCAAGTATCAGAAGTTCAG
AACATTCCTATATCCTACCTGATGCTTTAGAGTAGCCAAGCTCTTTGTATGCATCGGCGA
CTGTGGAATGACGCCATTGGATGGAGGGATACCAATTAGGCCACATAGCAATGTCTGTTC
AAGAAATTACACTGAAATAAGATAAACATAAACCAAATATTGAAGTCATTACCTAGAGTT
GTACTCATATGGACATACCAGGAAGCCTAGGAGAAGCAAATCATAGTGGAAAGATGGAGG
TTTCCTCAAGTTGAACTCTGCCTGCTGGGCAAGCTGGGACGCTACGCTGTGATCAAAGTA
GTACAGGACAGCAATCATTGTTGCAGGCATGAAGGCACCAATGATGTACATGAGTGGCAC
ATTGGGCATATCCTGCTCAATGGTATTGGAAACATTTGATGAGCTCTGATGGTTCTCATG
AAGAAACTTGAATGTCTCAGAAGTCTGGTTGAGTTTATGTAGTAGTACCTGGATGACTGT
CCAATTGTCATATGCACCAGGGGACCATGGATTAGGACTGAAGAGGCGCCGCGGGATTCC
TTTCGGCACACTGTCATGTGGTATGTAGGAAACTCCAGTCCACACCAGCACCATCAGTGG
AACGCCGTAGTCAGCGATGAAGCCACGCAGCCAACCTAAGGTGCGACAAAGCAAAGAAAG
TGGAGCAATACAGAGTTTGTTAACTGAACCGCATAACAATTGTAGGGGAAAGTGGAGGAG
ATTTGAGGCAATAAAATTCTCATAGCATCTGCAGGACCAGTTACAATTGACAGTGGATGT
ACCTGCCCCATAGCGCCAGGATCGCGCTTTCCTGCTCCGCAGCGCGGTGAGCAAAAGGCC
AAATGACAACACGATAGCGAACATTCCGTTGGCAAACCTCCATGATGGAACAAACTGTAG
TGCTTTTATGTTCTCCCTCTCAGGAATGCGGAACTCGTCAACAAGCCCCTGCGTCCAACC
CAGGTATGTGAGCCACGCTTGCAACCGTTTATTAAATACAGATAGTTCAGCTTGCACAAT
GCTTCTGTTACTGACCATTTGTTATCTCAAATAAACATTTTTTATTTGAATACTTCCAGT
GTTTAGAATTTAGGCCAAAGCATAATTAGAGATTTAGGACAAGGAAACATTTAGTTGGAG
CAATGGCCAAACAGCATAATCACTGATTGTGCAATTTGAGGACATCCCTATTAGCCTCCA
TGTGCTTTTCAGCTTCTGCACATGTCATTGGACTAACCTAGTAGGCTCTCCCACTAGTTG
GCACTACAGTAGTGCACAACTCTTAGAGAAGTACTTTGTGTTTTGCATCAAGTTCATACC
ACATTCACCTCAAAGAAACCGAACCAACATCGACAAAATGTCTCGATAACTCTCTGCATC
ATCACATGATGTCAAGACCAAACAAGCAAGGACACCAAAAGAGGCCCTGGTGTGTGTACC
AACCTTGATAGCTTGCTGCATGAAGAGCATTGCGATGAGGAGCCCGAACAGCTCGCCGGC
GATGCGGGTGAACCGGTTTATTATGGAGCACGCGCCTAGCACCGCCAGCAAGAACAGCAA
GACGGCAGTCCAGACGCAGACCCTGCACACACAAATCCATGGCTTCAAACCCAATTTTTT
TTAAACTGCAACTGGACCAACCCACAACAGTAACCATCTGCATCAATGCAACAGGGATGA
CTTACCAACCGGCCCAGGCGAGGAAGAGGTTGGGACCGAGGTCGGCCCTGTCCTTGGCAA
AGCTGAACATGAATGTGTACATGATCACCGTCGGCTCGGCAACGCCGAGGATCAGCAGGG
GCTGCCCTCCTACAACGGAGTGGATTATGCCGCACAGGGCGGTGGATGCCAGTGTCTGCA
CTGCTGTGAGCACTCCATCTGCACCAACCATTAGAGCCCCCTTAGTAAGTAAGCAAGCTT
GTCTGGTCACTCACTCAAATGCACTGAAACTAACACCAAAACAGAACTCAAACACACACA
CACCCCCACCAAAAAAAAAACAAAAAAACAAAAAAAAAACAGAAAACTTGGCTCCTCCAT
TACCGGTGCTCCTCTCCAATTGCTCCCCGAACGATATCACGGGTATCGCGGACGCGAAGA
ATATGTAGGTGGTTGGCGCTAGGATCCTGAAACACACGGGACGCAGCAGCTTCGTCATTC
CAAGATCTTGTGCCGCCAACGCAATGCTAGGAGAGAGCAAGGCAGATGCGTGCATATATA
CCTTATACCGGCACTGAAGCCTCCGGTCCAGTCCTGCTTGTAGCAGGTGAGCCGCCCACG
GAGGTCGTTCTTGATGCCTCGGAGGGGCACGAAGCTCTCCTCCATTTCCTCGGGACCCCG
AAAAAGGGATTCACTTCACTTCACTTCCCCTCGGAAACACGAAGGAGTCGGAGAGTGTAC
TGAGATGGCCACAGGGTGTGAGACGAGACCCAGATTACATCTTGCAGCAGACCGGGCCGG
GAGAAACGCTACGAGTCTGCGAGCTCGCTCTGCATTTAGCACAGATCCATGGTGAGCAGC
ACTGGCGAGTGAGCGGGCGAGGGAGGGAGGGCGGGATTTGAGGAGGAGAAGGTGTCAGAA
GGTAGTGGAACTGTGGGAGATAGATGACGGCTATATAGACAGACGGGGCATCCACGATGG
AGAAGCGGAGAGAGTCACTGTCATGGCCTAACAAGAATTTCCTCGCGCAAAGGGAGATTA
CCCACGGGATCAGGGGAAGGCTAAAAGGGAGTATATGCTAGCGCAGGATGGTTGTGGCTT
TGCGTGGCTGATGGTAGTCCTAAATCCTATCCTGTCCTCTCCTCTTGAGGGTAGAGCCTG
GTTCTGGCTGTTAGTCGCTACTCCCTCTGACTAGATTAGTTGTGGTGCTAACTCGTTTTA
GGAGTTGTATGTTGGCCAAACATTCCTAAGTTTGACTACCACCATTAGGGAAAAAAAGTT
ACCAGGACAATGACATGAAGTTGATATTGCCAGAGCTATTATGACATGTGCTCTTGGGGC
TCATTTATATTCACTGGCACTGGCGTGGAGGGCCAGTCCAGCTCTAGCTGTCTCTCTGGC
TGAGGGAAGGAGCCAAGCAGCTTCCTCTAATCAATTAAGAAATCTTCTTGTAGGTTTTCA
TCGAGTGTTTTAATTAAGTTGATCTTTTTACTGGATTTAAGGTAGAAAGGCCTCTTGGGA
GAATGTCCATGTGCGTTTGTAAACTGATGTTGTATGTATGTGCAGGAAATACTCAGCTTG
TTAATCAAATACTATTATACAACTGCTTGAGAACACATGAAACCCACTGCAAATCATGAA
GCTTTTTAAGAAATGCTAATCATTGTGAAACTGTAGCTTTCAGCAGTGGCCCTTTTCACC
TTTTGCATCTCATAAGTCGTTACTTTTCTTTTCTGTAGCAAAGCTTATTTCTAATAGGAT
GGATTGACACTTGACCAAGGGACAAAACCAACATTCTGAAGCATAGCTGCCAGTTTAAGC
ATCGTGCATGTAACTGTAAACTGCAATTAATTTATGGAGGCAGCAGGCCAATAGCTGTTC
TGTAAAAGCAACTCCAACGGGCCGTTCCAAATGGACGGCAAATTTGTTCGTTTTTTATCC
GTTTGGGTTGGCCGTCCGTCCGGCATCCGTCCTGTTTTAGATTTAGGTCGGCAGTGCGTT
CAACACGTCGGCTCATTTCATGTCCGCGGTCAACATATTTAAAAAAGGTCCGCGGCCGAT
CATGCCAGCGGCCATGTTTCATGCCAACACCATACCAGCGGCCATGTTTCATGCCGGCGC
CGGCATACAATGCCGGCCTAAAAAAATAGCACCAAAGTCATGCTGGCACACTCGCGAGCG
CCAGCAGGCCGACACACATGCGAGCACAAAAAAAAGGTGGGACTTGAGTTCGACCACGCC
ATTGCGTCCCCCTGGTCATGCCAGCACACCTGCTGGCATCCAAAAAATATGTCGCTCGCC
GCAATAGATCACTCGTTGTCGAAGTTGAGCATGTTGGCCTGCCTCTTCTCGAACCACAGC
CTCTTCCTTGGCGACACGGTGTTGAGATCCACCTTTATGATCTCCACCCCGGTCATCATG
C