Map Locations of contig_47892 (8050 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_47892

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63722 1 1778 bp AK373114 Available Available None





CDS Structure of MLOC_63722






Contig Sequence (8050 bp)

>contig_47892 8050 assembly3_WGSMorex_rbca.fasta
TGTGTGCCGCCCGATTGAGTACGGTGACGGTGGCATGGGGATCCAAGACCTAGAGCATGC
CGGGCTAGCACTCTGACTACGATGGTTGTGGTACGCCCGCACCGACAAAGACCATACATG
ACAAGGACTCGACCTACAATTCTCCCGTGAGGAGCGAGTGTTGTTCTTCGCCTCCACTTC
CATGGTCATTGGAGATGGACGGACCGCCCTGTTTTGGGACCATCGCTGGCTATATGGACA
GTCTGTGCACAAATTTGCACGGCTGCAAAACGAGAACACTGGCGGAGGGGCTCGCCGGCA
ACTCATGGACACGCGACATCCAAGGAGTAATCGGGATGCACGAGATTGGACAATATCTGC
AGCTTTGGCGGCCATGCAACACATCGCCCTCACGCACGAGCCAGACCGAATGATATGGAG
ATGGACAGCAAGCGGCACATACTCAGCACAATCATGCTACGCTGCGACGTTCCATGGCTC
CACGCGTTGCCCCTCATGGAAACTGACATGGAAGAGCTGGGCGCCACCTCGCGTCAGGTT
CTTCAACTGGCTGGCAGGCGTCGGCCCCGATGCCTACTGTGCGACCAAGCCCCGGAGACT
ATGCAGCACCTACTGTTGGTATGCCCGTTTGCCCGGCAAACTTGGCACGACACTTGGCAC
GACATCCTGGCCTGGACATACATACCAGCACAACCCCCCACCAACGAACCTGCACTCATA
GACTGGTGGCAGAGGGCTAAGGAACAGACACCCTCGGCGCTGCGCATAGGCCAACAATCA
ATCGCCATACTCGTCCCCTGGATGATTTGGGAACACCGGAACGAATGCGCCTTCGACAAN
NNNNNNNNNNNNNNNGACACATTGGTGGATAAGATCAGAGATGAGGCCAAGTGTTGGGCA
CTCGCTGGGGCACAAGGACTACGGGTTGTCCTGCCCACATCCTGGGATGTACACTGACCG
GGCGCACCACCCATGTATAACCAGCCTCTTAGGAGGATTGTACTTTCCATCTTTTCAATG
AAATGAAACGCAAAGAGTCTTTTGCGTTTTCTCGAAGAAAAAAAAGTTACTGAAACCACT
TGATGACTTACTTGTAATCCATGGTGAGTATACATCATGGAAGTCACCCCATCAAATCGA
AATCCATCAAACTTATATTCTTCAAGCCACCATCTCGCGTTTGACAGTAAGAATCTTAAT
ACCTTCATGAGAATAGAATATCGACACGTGTAAGAACAGATTAACAGGAACAGTTAGCCA
AATATGGTGACAGAAGTCACAGCTACATACTTCCCAACTCCCATAGTTGAACAGACGAGA
ATCCCACATCCAATGATGGCCACGTGGACCACCGTGGAAGTAATGTGTATCAGTGCCATC
GAAACCATTCAAACCGTCAAGGGTATTATTTGACGAATGACTGCAGAGTACACAAAATCA
TTGATGAAGCAATGCAACTGAAATAGAATCAACCAAACCAAGTAGAAGGAAAATTAGGTC
AGTTACAGACACATAAATATACGCAAGCAAGTGGCTAAAGCAAACAGATGATCTGATGCA
TATTTCTGATTTTTTGTTAAAATGTTGACATCTATTATTTGATGTTACCTAAGTCAAGCT
CCTCACTCCCTCCTTTGGGAAAAATATAATCAACCAGTATGGACTATTCCCTCAATCCAA
ATTGCTTGGAGTTCTAGATTTGTCCTAAGTCAGACTTCTCTATATATGACCAAGTCTATA
AAAAAAACTGATATCTACAACATAAAAAAAGTGCTAATATAATAAAATAAAATTACGAAT
CTAATGAAACTAATTTGGTGTTGTAGATATTGATATATTTTTCAATAGACTTGGTCAAAC
TTAAAAAAGTATGACTTAGGACAATTGAAGAACTTTAAGTAATATGTTCAAAGGAGTTCA
ACAGAAAAGTAACATCTAATATGAAGCTGGCAAGTGGGGCCTTGCAAACTCTATGTAGTT
CCACGAGTACATGGCCAGTTAATTAATTATTGATAGCATCTGAGCTTCTCAGTCCACATC
TATGATATCAAATTGTGTTGCCATTACAACACAATATTCTATGAAACCATCAGTTTACTA
GATGTACCAAACACATTTAATGTCCAACTGGTTTAATACATCTGAGAAAAAAAAAGTCAT
GTGGCACAATTATTTTGAATGGAAAATATTCGTCGATAGGGCCCTGCCATTTACAATACC
AGATAAACAGGTAAAGCAACTAAAATTAAATTGGACTGATTACCTATGAACAATATCCAT
AAGAACAAGCAAACCAAGCTCATGTGCTCTATCGATCAAGGATTTTAAGTCCTCTGGAGT
TCCAAAACGGCTACTTGGTGCAAAAAAATTAGTAACATGGTACCTGTAACAAGCCAAGAA
CAATAAAATGATCATACAGGTCAGGATACAAAGTGTTGTTGGGTGAAGAGGCACATAGAA
AAAAAAAGTAAAAAATAGATTGCGTGAATACCCAAAGCTCGCATAGTATGAATGCTCCTG
GATTGCCATTATCTGCACTGCATTGTATCCAAGCCTTTTAATTCTTGGCAGCACCTCATC
CCTAAAATTAGCATATGAATTTATCTTCGGTTCCTGTGCAAGATCACACTAAAATATTCA
GATGCATCCTGTGATGATGGTATATAGTAGCGATGCCTGAAAACTCAAGTAGGTTACAAA
TAATTAACTATATCATCTTCATAATGAGAGATCCCTACAGTACCTACACCTCAGAACAGT
GGAAGTTTTGCACTTGCCAATATGAAGACATTCGAAACAAAAATCGAGGTTTTCATGTGA
ATGCACCGCGTGAGTGTTAATAGTACATAACAGAACTAGAAAATCCATAGATAAACCATC
AGGACCAGAAACAGGTGAAATAACTTATTGACATACCGGGCTGCTCATTCCAATGTGTGA
TTCATATATCCTTAGTGACTCTGGTCGTTTAGGTTGAGGATGTTGGAAGACATACTTCTC
CTGCATTTGCATGAAAAATACCCTTCGTAAATGGTCACAAAAGGTCAAAATGGAATATTG
TAACCAACAGAAAACATATAAAAGAGCTATAAGATCTTAAGTCACACAAGCATACACACA
TCACCATGGTTGGTTGCCCCTTAGCCCTTAGAAGGTGAGTTAATGCATACCTCACTTCCA
AATTCTAAAGTATTGTCTTGACTCACATGTCAGTGAGACATGAAGTGGGTATTAAAAAAC
TGTAACACTGGAAATTTCATTTAATAATGTAATGTAGATCGATACTTACCTCTTCAGGTG
GATCATAATATATGCCATTGAATGGTATTTCACCTGGAGCCTGCACAGAGAACTTGATCC
AAGCAGAAATTGAATCCTTCACACCAGATGGAGTATCCATCCGTATCTAGAAAACAGAGA
GGAAAAGGGACCGTTAGTAGGCAGAGTTCGAAAATGCTACATCCTCAACTAAATAATTGG
CCAGCTTACCTTTACACGTGAGCCATGAGGAATAGCAGGGGATCCATCAGCATTGTTAGG
GAGGAAAATCTCCCAAACACCATAATCATCCTGAAAAGATCATATCAAATATCGGCATCA
ATCGGAGCAAACCTTCACTGATAGCATGGAAATATGCTCATTGTAGATGGAAAAGCACAC
ATAATGCAAAAGGTTCTACCAAAAAATGGGAGTGTTGCATGTATTCATTCATCCTTAATA
TACTCATTTCCAATCTCAAAAGGACAAAAAGCTGGACTAAATTCAGTAGAATCTTTAGGC
TGAAGCTTAAGACAATGACAAATTATACCATTTTGATATGATATAGTTGAGGCTCAACTT
TAAGGAATGTGCAAACAGCTAAATGAATACAACTAGATGTATCAATAGTTAAGAAGCAAA
GGTGGAAGATTGCCAAGCTGTAGACATACTCTGGTCATAGTATCTGCATTTGGGTTCCAA
TTGTTGAAGTCACCTACTAATGCTGCAGACTGTAACAGGATGCAAAAGCCAGGTCATAAA
TTTAGAGTAACTGGTCAGTATTCAGTAAGCTATTTTGTAAGTCCAGTAAGTTAGTTGGTG
AATAGTGACCATTAACAATAAACTGGAAGGTGTCTGTTAAGACTTAAAAACATACATGCG
CTCCAGGAGCCCATTCTCGGTAAGTGATACCTTTAGCACTGGAAAAAAGAGAGGGGAAAA
CAGGAATTATTAATTTTCTTATAAGATATGCAATTAGACTAGTGGAGGCGTTACATAATA
ATAAAGCTTTAAATTTACCTGCGGGTAAATCCAAGCTTTTCATAACCACGAGAAAAAACT
TCCAATCCACCTTCATGTTGGTCAATAGCAGCACGAATTCTCTTGTATTCGCTGTATCTG
TTGAATCCACCGAGGCATACCCAAAATAGTTCAAATTTAGCAGTGTGTTTTCCCCAAAAC
AGAAAGGCAACAAAGATAAGAAACTAAGTTGCCCAACTGGTAGATATTTTTCCCCAGGAA
TTTGGTAGAGGAATTAGCAAAGTAAAATCTATAACCCATCCACCACATTTTCGTCAGTTT
GCCACTCTGTAATTGTAATGATCGGAGACAGTTATTTGTATTGCAGTTATGAGAAAATTG
TAGCCATCAATTATACATCTACTTCCCAGCATATTCTCAGACCATGAGGGGAACTGTATG
AAATAGTGGCCCCTAGTCTTTGTCTCTTTGATGTTTCCAAAATTTGCATGATGAAAGGAC
CTTAATTCAAAATGAGCAAAAGTAGGAGGCAGGCATTACCGGTAGTCAAGATGGCTCCGA
AAATCTTTCAGCGTTGGGTCAATCTCGTATATTTTTTGCCCATCTCCTGGTTTTGGGACA
ACTTGCGGTTTCTCCCCAACGACTAGTTCTTTAACTCCTTTGGTTACACCATCAGTGATT
GTTTCCGCAATACCCTGAGTCGGTTCTGAAGATTCAAGTTTTTCTGCAGCCCCCCCTGTC
ATGTTTACTTCCGCCATTTCCTCCTCGATATCTTCAGGTACCTACAGCACGAAAAATAGC
AATTGTAGAGCAGAGTAACGAAACCAAAACAGTGCATTATTTTGTGAAGCTCTTGCTAGA
CTGCACATCCATCTGAGTTTTCAGTGGCCCAAGAGCCAGCACGGCACAACAGCTAACAAA
ATGCACAAGGCAGTGGAGTACTGCACAATGCTGATAGAAGAAGCTTGAAACCTGACGCCT
CTGCGGCTTGGTTTCATCCGACATTTGGTAAGTGAAATAACGGCTGTGTGAAGATTTTCC
CGCACCACGGTGTGTACCTGTAATTCTTCAGGTTGCGCTGGAGTGGCGGCCAAGTCGTCG
CTCTCACCGTCAGGCACCAGGACCTTCCCTGGAGCGGCCGCGCAGCTCAGGACGGCGCCT
GCAAATGCAAGGATGGCTACGATAGTGAAACGACGCTACAACTTGCAGCTACAGCAAGAA
CAGGAAGAAAAAGAGTGGGAAAACATATATCAGAATGAAAGGAGGAAATGATCAAAGCCG
TGGTAACGCCAGGGCCTGGGTAACACTAACGCATTTACCCGCACGGGAAAAAAAATACAG
GCTCAGGAAGCGCGATCGCCTAATCCAGCAATCTCTCTCATTCATGCAGATCAATTGGGG
AACGGTATCGAACAGGCCGTGCGCGCGCAGAGGGAGAGAGAAGGGGGGGCAAAAACAAAC
GGGGAGATTCGAGCGAGCGAGGCGTACGAGAGGAGTCCTTCTTCCTGAGGAGCAGCGACG
GCAAGTCCAGCCCGCCCCTCCGCTCCGAGCCGGATCGCGGCAGCGCTCCGCCGGCGGCCC
GCGCCACACCGAGGGTCGCGCCGGACACCGCGAACGTCGCCATCTCCCGCGCAGCGAGCG
AGCGAGTCGGTCGCCCAGATCTCACTCAACACGCCGGCCGAAATGCAGCAGCGCGGAACC
CGAGGCCGACCGAGTGAGGGGAGTGATGGGAGATATTAATTGAGAAGCGATGAGAAGGGG
GAGCAACGTGTGCGGCGGGGGTGGAAGCTGGCGGGTACTGTGAAGTGCATGGGGATGGGC
GGGGGAGAGGAGATAGACGCCAAGCCGGAAAAGGGCCCCACGGGGAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGCGCGGCGTCGTCTTCCTCCCTCGTGCGCGCGCGCAGAGGTGGC
AGCGATGGACGGACGGAGGCGACGTTGCGTAGGGGACGGGAGGGAGGACGAGATCGCAAA
CCAACGGCTGGGAGCGCGTTTAGCTGGCCATGCCGTTACCGGCTTCTAGTACCCTCGTTT
ATTCATTTTTTTTCTTTTCTTTTTGTTTACAAAATACTCCGTATTTACCATCTCCCAGAC
AAAAGCAGTTGGTGACGATGGGGTGTCTATTGCGAGCTAGATATCGCATCCTAAAATACT
CCCTCCGCCCCAAAATAATTGTATCAATTTTATATTAGCTCTAATATAAAATTATACTCC
CTCCGTTTTAAAATAACTGTCTCAAGCTTAGTACAACTTTGTATAGAGATAATACAAAGT
TGAGACATTTATTTTGAGATGCAGGGAGTAATAAGCTTGAGACAGTTATCTTAAAACGGA
GAGAGTATTTTTTAAGTCATGCTTTAAGAAATGTTTGTGTGCATATAAAATTTCATCGCG
AAATATATTTGTGAAAGACATGGTAAAAAAAACAAAATCGATACTTTCAGACGCATTTTG
TAGTTCTGATTTTATTTTATTTTTACCATGACTTTCATAAATGTAATTTCGTCATGAAAT
TTTACATACACAACAAACATTTTTAAATATGTCTGAAACAATTCAGATTTTTCTATATTT
TTATTATACTGTTTACAGGAGGAGCATTTGAGATCAGATGTACTCTCTCCGTTCTAAAAT
AAGTGACTCAAAAATGATTTAGTTTTATACTAACTTCAGTATAAAATTAAGTCATTTTTA
AGTCACTTATTTTAGGACAGAGGGAGTAGAAAGTTACTTTCGATTCTCACTACTCTATTA
AGTTAATATATGCGCACATACCAACTCATTAAAGGCTCGTCACAATATGCATGCAAACAA
GTTTTCCATTATTAGTTGATCCAATGCACATATCCACTCTTATATGCAAAAAAAAAATCA
TTATATTGTGACACTTATATTCAATAGATATGTTCACCTATGCAATAACTAAATACAATC
AAAATCTTTCAAAATTTATTGTTATTGATTGCCAGGAACGCACACGATATCATGTACTCC
CTTGGTTCCTAAATATAAGTTTTTTTATAGATTGTACATATGATATAAAAAGAAGATCGC
GCCATTCTTCTCTACAATATGTATTGTACATATGTGTAAATGAAATTGTAAATGCATCTG
TCGGTATACTAAAAAATGGGGCCTTTAGTATCAAAATTTGTACACATGCAAACAACGGCC
TTCGGTGCCGGCAAAACCTTGCCGGGCAACATCAACCTTCAAGCAATAGCAAGCCAAGGC
TAGAAACAAGGCTCCGACAAGCCACCTTGTCGGGAGGAAGAAGACCTCACAGCCGCCGCG
TCCCGACAGGACTCCTCTGGATCTCCGCCACTCCACCCCATGAGGCTGATTGTCAACATC
AGTGAGGTGTCGAGCGGACGGGCAGTTAGGTGGGTCTAGTGAGAGACATCTGGCAATAGT
CACACACATGCAGCAGCTTTAATGACACACATCCCGCGGCATGTCAAGTAAATAAAGGGT
AGTTGTGCGAACGTCACATAAGGAGAGGCAATCCTTGCCGAGAAACGTCACCAGTGCGCC
ACCTCATGGCGCATTTAATGCATTTGTCTCTGTCCCTTAGAGTTAGGTATTTCCCACTAT
AGCTCTGTCAGTGGTTTTGGCAGCTATCATATGAACTATTCTTCCACGAAAAGATCAATT
TAGCCACAGTGGTAACCCCTTAAATTATAAAAGGAGGTCCAGAGTGTTAGGGCATATATA
TATGCCTAAGTAATTTTGGTGATTGATGACAGTACCGTAAAGGGCTAATCGTGTGCATTA
AGATTTCAGA