morexGenes - Barley RNA-seq Database

Contig contig_47891
Source Contig contig_47891
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47891 (8236 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_47891

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63721	6	3730 bp	MLOC_63721.4	Available	Available	LOC_Os08g37990.1, FRAME:-1, EVALUE:7e-19, 13108.m04016 protein expressed protein
MLOC_63720	3	1702 bp	MLOC_63720.1	Available	Available	None
CDS Structure of MLOC_63721

CDS Structure of MLOC_63720

Contig Sequence (8236 bp)

>contig_47891 8236 assembly3_WGSMorex_rbca.fasta
CTTCCTACTCGATTGATACCTTAGTTTCATAACTGAGGAAAATACTTGCCATCATTGTGC
TACATCACTCTTTAAGCTTGGAGGGAAACCAACGCATCAGCGAGGAGTCATTTGACATTG
CCTTCTTCACCACAACGTCGGCCTCCTTGTGCACATATTCCATGTTGTTGAAGTTCGAGC
ACACTTTTATTGTGTTCTTGAACTTCGTGCGGTCACCGAGCGAGCACCCCAGGAAGAAGG
CCCTCCATCCCATTCCCGAGGGGAAAGGGTTGGGGTTGGAGTTCATGGCGAGGGAGAGGT
GGTGAAACATAGAGGTGGAAGAGGAGAGGAGGTGAAAATGAGAGAGGGTTTGGGTGCGGT
GTTGGGTCAGTTGTGTCGGTAAATATAGAAGTGTTAGGTCGATTGGAATGAGTGCTGACC
TTTGAACCGTGTGTTGTTCATAATGCAGATGGACAAGGGCAAGGAGGTCGTACCACCATT
GAAGAAGGGCAAGGAGGTCGTTTCCGCCATTGGTGGATGTACCGGTGCAAGATCTCCCAA
GCGCCAAGCGGAGGAACTACAAGCACTACCATGAGGAGGCAGAACCAACCCACTTCTGCA
AAGTGACCTTTGCTCCAAAGCCGGAGACTCTGCCTTGGCCTCTGGACTTCACAAAGCACT
TCCCCGTCGTGCCTCATGAGCTCAGTATGAAGACGAACACCAGCTGCTCATGAAGGGTTG
CGGTGAGGGTGATCGACGACATGGTCACCCTTGATCAGGATTGGTTCACCTTCGCCGCCG
TTCACCGGGCCAGGACCGGGTACATGATGACGTTCAAGCTGCTGACCCCCAACACCATGA
AGGTGACCATCTTCAACGACGACGACATGTAGGTGGTGAGCAAGTGCAAGAAGCATGACG
AAGCATGCGCTGTCACCGCCTAAATGACCTCTGGTTACTAGTTCAGTGTTGGATATTAGT
TAAGACTACATTATTTGTTACGACATCACTTAAAACTTATCGTACTATGTTAAACTTTGA
TGTGCGCTTAAGTTTGTTATGATTGATTTTGTGTCTCCGGTAACCTTACCACATCGACGA
GGAGGTTACCACACTATTGTCGCGGATGTAACCAAATAACCAAACTTGTGTTTTCCTTAA
ACCAAGTAGACAACCAAACAACTCGCCTTTCGTTTGGGCACATGCACCCTAAAGGGGATG
CACGCAACCACTCAACATGCAAATGTTGGGTTTTTTATTGCATATATTCAGACATGTGCA
ACTGGAACAAGCATGCAAAATGGAAGAAAACGATGCATGTAACCATTGGCGGAGCTAGCT
AGGAAAAGATGGACGGGCGGTGCGAGCTAGGATAGAGAAAACACGTAAAAAATGCCCTCA
ATGTACTAGTTTTCCTTTCTGTTTTACTGTTTTTCTTTGTGTTGGGCGGGCCGTAGCACA
GGTTTGCCCCTCGTAGCTCCGCCACTGCATGTAACCAAACCCATCTTTGTTGTTTTGAAT
ATAGGATTTATGATTGCAAATAGGAAAATCTAAGGCATGTCCGGCCATTGTCCGCGGACA
CATCTGTGCACTGTCAACGAACATATAGACCCGGATTTGTATATTGTGGTTGTAGATGCT
GAAATGAGCTCGCATGAATAGTACCCCATTTTTTTTCAAAATAGTTCAAAAACAAAAGTT
CTAAATGCTTATAAAATTTCATCACAAAATAACATTTGCGGAAGTCGTAGCAAAAAAACA
AAATTGATGCTCCAAAAGTGTTATTTTCGATAACATTTTGGAGTATTGATTTTTTTCATG
ACTTTTATGAATGTCAGCTTTTGATAAAAAAAAATTAAGCAATGAAAACTATTGTCAATG
TTTGCATCTTTTTTCTAAAATAAAATATTTTCATTTATTTTGGTATTTACTGTTCATCCG
AGTTCAAATAAACTTGGAAGCAGAAGATGACTTTTGCCATAGATGCAACTTCTATGGACA
ACAAAATGTACGATTTTTTTTCTCCACATTTCCCGATTTCCATGTGATCGTCGTGTCACG
GTTCACAGATGGCACGAGCGTTCCTCCAGGTGGTCGGCTCGCCGCCTCCCCTTGGCCCCC
CGCCGCGCCGCGTGTCCCGCCGCTTCTCCTCCCTCTCCTCCTCCTCCCCCCTGGCTCTGT
CCGCCTCCCCGCTGCCGTGCCCGTGATATAGCCACGGGCTTTCTCCGAGAAGAGCGCATC
GCAGGCGAGCGCGCGAGGGGTCGGGGAAGGGAAGAGGATGTCGCTGGGGGCGGTGTTCCA
CGGCGCGCAGCTGTTGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGATGTTCGCGCTCGG
CCTCTTCGCCGTCGTCACCACCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCC
CATCGCGTCGTAGCCGCGAGCCGCCTCCCGCCAAGTCCACGGCCCCCTCGGCGCATCCTA
ATCGTAAGCCTGATTGATGTCAAGAATTTCATCGCTTCATTTCATTTCAATTCAATTCCA
AGGTTGGGCCGTCGACGACGAGGAACACTGGAATGCAGAGCGGCGGAATCGATTTGTTTT
GCACTATGGTGGTGAATTTTGGATGGAATCAAAGAAACAATGTGCTCGCTCCGCATGTTC
ATGCTTCCCGACTGGCTATGTGGATAGGCATGGACGATGCCACGATGGTTTTGAGTAGGA
GCACGTCCTCGTACTTGGAATCCATGGGATTGACATTCGGCACGATTCCCCTAGCATTGT
GTCTTGTGTTACATTACATCAGAGTCTGCACCATCTCCCCCGACCCTTGTCGCCATAACA
TTTTTAGCATTTAGTACTGCAAATGTGCCATGTGGAGTACATTTGCCTAAGGATGCATTT
TCTGATTAGTCTCACAAATTAATGTTGCGGGTTAGCTCCCCTCGTTGTCTTAGCCTTGTT
GTGATTGATTATTTTGTAGAGGGCTCCAAGCTGGAACACCCTGTACGATTCCCTGAAGAT
TGTGCCTGCTGTTTCGTTGTTTCTGAGAATATCTGGTGTGGGATTAGGCATGGTAGTAAT
CTGGGTGATTAGGGATATTTCTTTTTGAGACCTTGAGCTGGCTCCTGATGCTTTTGAACG
AAGTGGCTTTTATGTGCTTGGTCAGAAAAAAATAGCATCAGAAAGCTACAACTAAGGGTC
TTAGATCTTGTTTGGCCACCGCTGAGCGAAACGACTTAAGTTGGGAATTTTGCAAATCAC
CATCCCTGCCTACTTTGGATAACTGTAACTTTCACAATGAAACATCAACTGACAGCCAAG
CCAAAACCATGGTTTTTAACATGCATATCTGCTGCAAGGCCTATCGAAGTTGATTGTGCA
CGGTGCGCACCTTCATCCGAAATAACTCAATTACCTCTTTTGCAGTTCTGCTTTACCCTG
TCTTTGCTACTAACTGATTAATGATTAACTGATTTCCATTCGCCTTAATAACTTTTTCAT
TTCTTTATCTCAGGAATGAGATTGCTGTTGGGAGGTAATACCTTCTTGTGCACCATTTGT
CCAGCAGAAGGTGCTCCATCTGACGCTGCTTCTGCTTTTAGGGAAGTACTGTAGACGCAA
AGAGTAGGAATTGCACATATCAGGTGATAGCTGGAGGCTCTTGTACCTTGTATTACTTGT
CATGTCTACTTAAGCTGTTCTGTAAACTACACTTGTTTGTGCAGTAAATTGTTGGTTCAT
CTTCTTGAAATCTTCTACATCTTATTGTTTATAAATGTACTGTACATTGTCTAATGCTTC
TTATATGGAAAGGCCGGATATTCCTAGGTTTCATGTGCAAATGCCGCATCAGTTGTAGTA
ACATTGGTCTACCATATAATATACTTATATGATAGGATTTGCTTTACTCAAGGGTAAGAA
ACATGTGTTAAGGAGATCTGTGTAAATCCTATTAATTTTTGCTCTATGGCAGTTCATATA
ACTTAACTGAGAGACAATACTATATTAGATTTACTCACCAAACGTGAAAAGATTATCAAC
AGACACACCATAATGCAGATTTCTGTATACCCTTTTTCTGAGTAAATTATAACACATGCA
GATATTCTGACCTACAAAATTATTGGGAAAGCAGAAGGCCATTGAACCGAATTATCTTTT
TGGGTTGGTGGCCTCGACACTTCATTGGGGAGGTGTATCTGGACAAAGTGCTCATTAATG
TCTATAGAAACATAGGAGAGCATGCAGTGATTGAATGTCGATGTTAAGAATAGGGCAATG
AATAGTAATAAAAGGGTGACAGATTTGCACAGGAAGAACTAACCTATGAGGTGGTTAACA
AATGGACAAAGCAATAGAAGGCAATAGCAGGGACCATCACAAGTCCTTCAGTTCCTCATG
CCTCTAACATGGATTCTAGCTTGATAAGAAAGAAATAGAGGAGCAAGGATTTTTACATCA
GTTACCAAAAGAAGCTTGTTCTTGATGAGCTACGTCTTCTATTGTGGCCTCTTTTGCTGC
TTTTCTCGTCCCCTTTTTTCATCTTGCCCGCCTTTTTGCTGCTGCCGGTCGAGAACTTGG
TAAGTGTCTCAGCTTGTTCGTCCTTACCATGTTCGTTGCTGCAGCCATCATTTGCCTGAC
GATCTTTCTCTTCTTTGCCTTCAAGCACCTTCACCTGAGATGTCCCCGTGGAAGCATCGG
ACGCCAGGGAATCGTAATCTCCATCATCATCCGCGTTGTTTTCTTCTTTCCCTTTCCTCC
TCTCGGTGATGTAGCCACTGCCATCTTCAACATTACTCCCTTCACTGCCGTTCTCTTTTG
CTTCGTAGCTGCTCGTGGGGGAGGTCAGGTATATCGTCCACCCGGATTCATTGCTGTTGC
ACTCTTCGCCGCCATCCCCCGTGATCTGGGAGGATTCCATGGCAGGCGACCGGAGTGGAA
GACAAAAGAGAAACAAGAAAGGCCAAAGACAAGAGGCAGAACGAGGTCGAGGGAGAATTC
TGCAAACAACCCACTCTTATGCCTGTTCTGAAATCTGAATCTCCTCAACAATGCCGCACC
GAAGATGGCATTGTTCTTGGCTATGCCTCTTGAACACCCATAGCCCGGGAGGAGCACGGG
ATCCTCCAGCACCCAGCCCTCTTCACAGGCTAGAGGATTCAGAGGGAGGGGCTGGATAGG
ATTGCATGAGGGGGGCAAGAATTCTTGAGGGCTGGGCCGTGTGTATGTCGATGGTGTGTC
TGGGGAGGAGGTGGAGGTGTGTGAAGGAACCGCAGAAAGGATGGCAGTGTGTTTAAATGG
GAAAGGGTGGCCTATCCTCGCGAGTTCCAACTGTCACCCATAACTTTCCCCAACCATTTG
CGTACCCTCTCTTCTCTTGTCACCAAAGCCAGGGAGGAGGAGGAGGAGGCAGCATTTTGC
TTGCAGCGCAGTGTTACAGGCGTTTCCATCTGTAGTCCATGTGGCCGTGGCGCCTCGCCT
CATGGTGGGGGCCTGGCAGAGAGGCCTGGGAAGATTAGATGCACCTGCATGCCTGATAGG
CCATGATCGATTTATTAGTAGCATTAGATTAGTAGAAGTTTAAGCATGAGGCTGGCATAG
CTCAAAAGGCCTCTTGTCGCCGCTGTGTCTGCCTGTCATGCGTGCCGCCAAATGCCTAGC
TTGCTCGCGGCGTATGTCCACTTCGACCGTCTGCAGGACCAGGAGAACATGTCTTTTGTT
TGCTTTGGTACGTACTACTCCCTCTCTGTACCCTAAATACTTGCATAAGTATTTAGGTGC
AGAGGGAGTACATGTCGACCATGGATGGGCAGTTAAGCCCAAAGCCACTGGATTTCATGC
GCTGATGCTTTCGTCGTTGCCATCTCGATCGGTAAGTAAGAACTCGTGTAGGAGTAGATG
GTGGATATGGTGAAATGTGGTTGATCGGAACATGATAAAGTGCTTGATGCGTTTATCGGT
TGTTTATCATATACTAGCTAGATTCGGCGGATACTGAAGAATGATAGCGGTAAAAGGGAT
ACCAAACTTGATTAACGTGACATCCTTTCCTCCGAGCTGGAGAAAGGAACAACCCCAGCC
CAGCCCTGGCTTGCTTCTGAAGCTTTCATCGGGTAGAAAAAGGCAGTCTTGGAGACATGA
AGAGGCCGGACCTCGTGGTACTGCTGTTTTCATGTCCTGAATTAGCTTCTTCCTCCTGCG
ACCTAATACTTTGTCTCCTGCAGTTATTAACCAAAAGAGAAAGTTTTGCTGGCCTTGCAT
CTTGCTAGCTAGCTATAACTCCGTATGCTTGCTTGAGCAGTGTGCGTGGCGCCGACAGGA
AATCGATCGAGCTATAACTCCGTATGCTTGCTTGACCAGTGTGCGTGGCGCCGACAGGAA
ATCGATCGACGCGACCGGCTAGGCTGTGGACGGTGGCGCTCCTACGATTGCGTGCATGTA
CCTGAATATTTTCGCTCGTTCCTGTGCTTGGGTCAGCGTCTTCTTCCATTGCCACGGGTA
GGGCGCATGCAATACATCATCCTCCTCCTGTGGCTGGCTGTTCCACGTGCACGTATGTGC
ACCTGGTCGGGTCGTCACCACTCAACTCACCAGTACGGGCATCGGAGCCCGGCCGTTCAG
GTTCACCGCACGCGACGACGGTGCGGCCGTGCCCGTGCCCCTACCCCTACCACCCTCGAC
CGTCCGGTAGGGTAAGACGTCGCGCCGGATTTCACGTGGGGACGGTCCGACGAGACGGTG
CAGTCGGCGGCAAGCGACGACGACCAACAGCTGCAAAGCTTTGGAGTAACTCGACGACCA
CCACCACTCTGCACTGCAGGTCTCTCGACCAGATGGTAGCTAGTACTGGTCATGGTGCAG
ACAGAGGGTGGACACGTCCGTAACTCGTGCTGGTGAGCGGAGCACACGCGGCCTTGCCCC
CTGCGTCACCTGTCCGGGTCGATTTGAAGGGCCGCCGCCCCGCGGACTGTGACGGGTACA
GGGCGCCCATGCACGTCGGGTTCGGGCGTCTAATCGGCCGCTGTTGCACACTGATTCCTC
TGCTCTGCTGCTGTCGTTGCCGGTGGCAGAAGCCAGCCTATGGATGCGTCTGCTGGGTGG
TTGGTTGCCCTAACGTTGCTGCTCGACGCGCTGATACCCGCCGGTGCCGGTGCTGGTGGT
CGGCAGAGCAGAGCAGAGCAGAGGCCTGCCGTTGCGTGGTGTCCACGGGGCGTCGGTGCG
CGGTTCTCCGGGAACGAATGGGAGTGCCCTTTCCACCTGCGGCGGCCCCGTTGACATGTG
CGCGGCTCCGACAGGCGATTCGGGCCAGCCACACGCTCAAACTCTGGTCAAACGTTCTGT
CAGACCATCCGGTTATTGTCCGATCACAAATTTCGTTCAGACGTGCCTCTTAAACCGGCC
TCAAACGCTTGGCCTAACAGACACTTTTTATTTCTAGCTCAAATATGAAGCGAATATGGG
GAACCCGAACGCGTCCGGACACGTCCGTCACGTCGGACCCGACAGCCCGACCCTACCTCA
GATTGCAGAAAATCCTCCGAACCCTTTCTCCTCCTTCCGTTGTCCGGCAACATTTTTTGC
GCCCGACCCCTCGCCGTCCGGCACCCTTGCTCTCCATCCTCATCACATGTCTAGATCCGC
CGTCATGATGTCTTCCACCCCGTCCTCGACCGCCACGACGGAGACGCAGTCCGCCTCGTT
CGTTGGCGGCCCTTCCTCCGCTTCGTGTTGCAAGCCAGAGAACATCGCCCGTAAGTTGCG
TCGTCGTCGGTAGAGATAGAGGGAGTTTGCGGCACAGGTACATGTGGGCGTCGTCGACGA
GATGTCTCCCCCGACGCGTAGTGCTCCCCGTACCCCATCCATACAAGTGCCAACGCGGAT
TGTGTTGTCCGGCACCGTCGAGACCGGTGAGGAGGATGAGACGGCTGCCTTGACCCTTCC
GGAGAGCTTTCCGGCCATGCAACAACCATCGGTCCATGAGTGTGAGTCCTCACAACTCAT
TCGGGAGCGGATGAGCACGGCAAGCCCACCGCACGGGTTGCACTCGACATGTTCGACGAA
ATGTCTCACAAGGACTGGGTACATTTGCTCTTTTCCGATCTAATATTAATGCTTTGTGTT
AGAGCATATTTCTCCGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGACACTTCTTGAAGTCCATCTGTAGGG
TTCAAGGAGTTTATAT