morexGenes - Barley RNA-seq Database

Contig contig_47787
Source Contig contig_47787
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47787 (9704 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_47787

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63633	3	1518 bp	MLOC_63633.1	Available	Available	LOC_Os06g11730.1, FRAME:-3, EVALUE:1e-24, 13106.m01273 protein RNA recognition motif containing protein, putative, expressed
MLOC_63632	1	426 bp	None	Available	Available	None
MLOC_63634	1	233 bp	None	Available	Available	None
MLOC_63631	1	397 bp	None	Available	Available	None
CDS Structure of MLOC_63633

CDS Structure of MLOC_63632

CDS Structure of MLOC_63634

CDS Structure of MLOC_63631

Contig Sequence (9704 bp)

>contig_47787 9704 assembly3_WGSMorex_rbca.fasta
CTCCCCCCCCCCCCCCCCCCGTGGTCAGAACCTGTTGCAGAAGGTCTGTGAGCTCATATG
CCCCGTGTCTGGCTCATGGGATGTACAATTGGTCAGGGAGATTTTCTGGCTGGATGATGC
TCACCATATTCTGCAGATACCGATTAGGGAGGGACTCCCAGATTTCATCGCCTGGCACTA
TGACAATAAGGGACAACACTCTGTTAAAAGCGCGTACAAGCTACATGCGCGATTGGAGAG
AAACCGAAAAACGGGGGAGTAGGCTCGAGTACTGAACGTGTGGGCAATTTGGATAGGTCT
GATGATGAGCGGTGGAAAAGATTGTGGAAGCTGCCTTGCCCGAAGAACATTCGGATGTTT
GCATGGCGAATTCAGCATGACTTGCTTGCTCTTCGATCAAACTTGATACGCAAAGGGGTA
AAGCTGGAGGATGCAAAGTGTGTGTTCTGTAGCAGAGTGGAGGAAGATGGGGCTCATCTG
TTCATCAAATGTAAACAGGTCAAGGAGGTGTGACGGGAGCTAGGATTAGAGAAGGAGAGG
GTGGAGCTGGAAACCATATCCGGAGTCCTGGTAATGATAAATCACCTATGGACTAAGGAC
CAGAAGACGAGGCTCATTATTCTTACATTCTGGTGGATGTGGTGGAATAACCGGAACAAG
TTAAGGGAAGGAAATCTCCCCATCAAACCGGAGGCCCTTGCGCGCCGGGTTACTTGCAAT
GTCAGGGAGTATGAGGAGCTGTTTACCCCAAGTCCTAAGGACACTAACACGGCAAGGTGG
AGGCCTTCGCCTGAGGACACAATCAAGATCAACGTCGATGGGTCGCATATCCCCAGGGAG
AATTGCACCGGATGGGGTGTTGTGGCAAGAGATAGCAGCGGGGAAGTAATCTATGCACGA
GCCGGTAAGCAGGATCATGCTAACAATGCATACGCGGCAGAAGTACATGCAATGTCCCAT
GGGATTACAATGGCTGGAGATATTGGTGTTGTACGGGTGATCTTCGAAACCGACTCACAG
ATGCTTGTTGAAGCTATGGACCTAGGCAAAGCAGACTCGTCGGCATATGCAACCGTCATT
GAGGATTCAAAACTACAGCTCAAACTGTGGTTTGCGAGGCAGCATGTTGTTCTCTGTCCA
CGCAAGGCCAATTCAGTTGGGCATGAACTGGCGAGTATCGGCAGAGACTGCATGCCCAGC
TACTCCCACCAGTGGGAGTCGGACGTTCCAACTGTTGTAGCTGGCTGTGTGATGGGAGAC
CTGCCATTATGTTTATTAACACCGTTTATGTTAATAAAGTTTTGCTTTATCTCAAAAAAA
CTAAAAAGCTGCTCCCACCAGTGGGAGTCGGACGTTCCAGCTGTTGTAGCTGGCTGTGTG
ATGGGAGACCTGCCATTATGTTTATTAACACCGTCTATGTTAATAAAGTTTTGCTTTATC
TCAAAAAAACTAAAATTATTCGCTTCTAGGGTTCGAACTTGGCTAACCACTAGAACAACA
GAATACTTGTGAATATAACTAACGCTAATCGTACAAGAACAAGTGTATCCGCGCTATTTA
TTAAGCACATAGATTTTCTTTAAACGTGAATTTGAAAACGTTCATCATTTTGAAAGAAAA
AAAGGTCACAAACTTTATCATTTTTTTTCAGAAAAGTTCACAAACTTAAAAGAAGTTCAC
CGATATTGGAAAAAAGTTTTAAAAAGGGAAAATAGTTCATAGTTTTTTTAAATCATCAAT
TTTGAGAAAAAAATCTAAATATAGAAAAAGGTTCACGGAGTTTGAGAAATAGTTCACCAA
CTTTGAGAAAAGTTCACAAATTTGATGGGAAAAACATCAATTTTGAAAACAGTTCATCAA
ATTTGAAATGAAAAGTGCATTGGATTTGAAAAATAGTTAATCAAATTTCGTAAAAGTTCA
CAATATTTTAAAATTGTTCATAAAATTTTAAAAAGTTCATCAATATTAAGAGAATGTTCA
CGAATTTGAAAAATAGTTCATCGAATTTGATAACAGTTCATCTATTTTGGGAAAATGTCG
ATAGATCAAAGACTAACAAAACAGAACAAAAACGTTCCGAATAAAAAGCAAGACAAAAAA
AATTAAAAAATAAGTGAAAAAAGAAATAGAAAAAGGGAAAAGACGTTAGAAGAAAGGGAG
GAAGAAGCAGCAACCGACCTGCTAATGCGGGACGTTGGGTCTGTTGGCGCGTCACATGGC
TAACAGTGAGGTCGCGGGTTCGAATAGCATCAAATGTGGGCGTCATTTGTTTTTGTTTGT
ACAACAGAACAAATAAAGAAGATGGCCGAGCCCAGCTAACTCGATGCAGGCGCCGGTTTG
CATGCCCATGTTCGTACTGTTTTTCGCTAACCGGCGCCTGCAGCCGCGATAGACGGACCG
ATCCATTCTGTTTTTAGAGAAACCTCAAAAAGGTGGATCAATGAGGGTTCAAATAAGGAA
CCACTTTGTTGTGAGCACTTGGCTCTAACCACCCGGCCATGACCCGCCTTGTGAAATTAT
ATTTCCAGTCCATCATTTTACTCTGTATGTCAGTTCGGTTGTTGATTCTTCTTTTTATCA
TCTTTTTTGTTTTCTTTAATTCACCTTTTTTTTTAAATCCGTTAACCTTTTTGTTTTGGC
CTTTCTTTAATTTTAAATTCCATGATTTTCTAAAAACCAACGGGCTTTTCTTCTAAATCA
GTGAACTCTTTCCAGATTTGATGAACTATTTTAATTTTTTGTGAACTTTTTTCAAAATCG
ATGAATTCCTTTTCAATTTTGATGAACGTTTTTAGATTGAATGAAATATTTTGAATATCA
ATGAATTTGTTATCAAATTTGATGAACTTTTTTAAAATACGATGAATTTTTCAGATTTGA
TGAACTTTTTAATAAAGCAATGAACAAAAGATGAAACTAAAAAGCAAAGAGGTCAACCTT
GAGCCCTTATCATTTTTAAAATAGAATTGCACTAGGGGGCGACCTTGAACCCTTATCTTT
TTTGCCTTAATAATAGATGAGGTTACAAGGGATATACAAGGAGATATCCTATGGTGTATG
TGTTTTGCGGATGATGTGGTACTAGTCGATGATAATGAGACGGGGTCAATATGAAGTTAA
GAGTTATGGAGACAAACCTTGAAATCGAAAGGTTCTAAACTTAGTAGAACTAAAACCAAG
TACATCAGGCACTCATGGAGGCCTCCGTTGGCAAGGTATGGCACTCGCCATACCTTGATT
CTGAGCAAAAAAAATGTATGTATGTTACGGCTGCCTCGCTAGTTGGTTTTGACCGCAGTC
AATTTTACACTAAGAGCATGGATCCCCTTTATCCATCTTAAACGCCCAAATAGGTCACAC
AATTAACGACCACTCATGAATTTCCACCCAACCAGGCACATCAAACATACCTCAAACACA
CGGGCTGACCGGCACCCCTCATATCCAGCCCAAATATGGGGCAGTTATGGGGCGTCCGGG
CGCGTCCATGCACACCCGCCATGTCGGTCTGGCCCGCATCGACCCAACATATATTCGTCT
CACGCTTGCCGGACCAAACCCTAGCCATTCCACTTCACTCCCATCCGCGAGCCAAGCTCA
CCTCCAGCGATCTTTGGGCTTTTTCGGTATGATGGGTTGTGGATCTAACTCCGACCAGTC
CGGATTCGTTGATTGAGATGTCATCCCAGTTGGAGGAGGCAATGGCGGTCCGCATTGCAC
TTCACCGCTCCCGCGAGGACAACACCCGACCGACGGCAGGATCTGTCCGACACGACTACA
CACACTTCTGACTCCACTTGATGTCCGGTATGATGGACCCTAAATAGCGAGGCGGCGGCG
GTTTGCCAGGTCGTCGGGACAAGTCGGGCGACCATGACAGGGCAGCCAACAGCATTGACA
TTGCCTGGGTCTTCTAGACACCATTGAAAACTTCATTATCGATATGTTTTCGGTTGTTTT
CCTATTGAAACATGCCTACATTTTTTTAATTGTATTTGGTTTTTCGTTTGCAATGAGTAT
TGACTTTTTTTATTTGTATCAGAAGAATTATTTAAGACTTCGCCATACCTTAATTTGTTT
TCATCCTCCACCTCTAACATCAGGTGCAGTTTCAGTACTACTATGCACGGGGAAAGTAGT
AGTAGGAGGAGGTTAGTCTTAATGGGCAAATGGTGCCTTAAAAGGACACCTTTCAATATT
TGAGGTCAACGCTGTTAAAGAATGGGGATATCGATGAAGATGTTAACCATCAAATCAAGG
CGGATGGTTGAAGTAGCGTCAAGCTTCTGGCATTCTCTGTGATAAGAGAGTGTCACAAAA
GCTAAAAGATAAGTTTTATAGGACGACGGTTCGACCTGCAATGTTCATGGAGCTGAGTGC
TATCGACTAAAATGCAACATGTGCATCAGTTAGGTGTGGCGGAGATGCACATGTTCAAAT
GGATGTCTGACCACACAAGAAAGGGCCGAGTCCGGAATGACGATATACAAGATAGATTTG
GGGTATCACCGATTGAAGAGAAAGCTTGTCCAACATCGTTTGCTATGGTTTAGGCATATC
CATCGCAGCCTCCAGAAGCTCCAACGCATAGCAGACGGCTAAAGTGTCCTAATAATATCA
AAAGAGATCAAGGCAGGCCGAACTTAACATGAAAAGAGTTCGTTAAAAGAAAATTGAAGG
ACTAAAGTATCACCAAAGAACTAGCCATAAAAAAGGGTGCATGGAACCTTATTTATACAA
TGTGCGAGAATGATGAGTTGGTCTCGAGATCTGATAGATTTCACCGCTAGCCTATTCAAC
TTATTTCAGACTAAAGACTTTGTTTTTATTGTTGTTGTATAAAATATTTGAAAAATATCA
CGAAGAGAGGGGCCTTGTCTTGCTGGCACTCACACACTCAGTTTGCTAGCGTGATGTTGC
TTCCTAAATGGGCCAGGCCCATAACTATGCAGGCACATATGCGTCAGCGACGCACGTATG
CGTTAGTAAAACACTGTTAGCTTTACTTTTTATTTTGAAATATTCTAAATACGTACAATT
CAAAAATTAAAAAGTGTTCACCATGAATTCCAGAAAAAATTAATGCTGTAAAACAATAAT
TCTCTCACTTTGTTAAAATGCCAAAATATATTTACATGTTTTGGAAAAACATACATTTTA
TCTAAGTACATGTTTGTATTATTTAGAAAAACGTTTCAATGAATGTGATATTTTATAAAA
TGCTTACCGATTTCAGCACGGTCAGCGCGCAGACATGTAAATATCAGCATACACAGTTTA
TGTGCTGGTCGCCTGGTCCAACTCATGTGTACAATTTGCTAAAAGCGAGACATAGACATT
CCCCTACGAAGGCTGCCGATGCCTGTTCGTCCTTACGGCTCCTCGGCGTAATTACCAAGT
ACAGTACTATTGACTATGGAAGCCATTGCTTCAAGCAAAACATGTTGCTGCTACACCAAG
CAATGTGCTTTATTTTGAATGCTTCCACTTTTTAAAAAAAAATCACTGTTCATCCACGCT
CATGTGAGCTTGGTGTGAGAAGAACACTTTCGACTTGTTTCCTCTAATAATGGAAGAAGT
TATGAAACTTGTTGCGGCGAATACTTGTCAAAACTTAAAAAGAAATCCACGAACTACGAA
AGGAAGAAATGTTTATGGTTTGTCTTTTCTAGTCAAAGCATCCTGAGAGACTGTTACAGA
CCATTAATAACTTCGTCCGCACCAGATCCATCGAGATGGGAACAATAACTTTAATTAGAA
AGATTTAATCAGAAAGCAGTCAGTTTCGAAGGCGTTTGGAACCGATCAGAATCTCCTTTT
CTCAGCCTTGAGCTGCATATGCATGCGCCATCAGGCGCCCTGCTGCTGAGCGTTGTTCGC
GTTCGTTGGCGCCGCTGCAGAGGAGGCCTGGCCACCAGCCGACTGCATATCTGCACCCGA
CGTAAAAACATCACTACCCCTGACGTGAAAACAGCTTCGAATCCCCTATAAACTCATTGC
CGAAAACGAAAGAAATTTGATCCTCAACTCGACATACCGGTGGCGTTGGGAGGCAGCAGT
GAGACTGCATGAGAGGGCAGCTGCAGCGCGAAGTTGTGCGGAAGAGAGGGCACCTGCATG
GAGAAGCCCTGCATCTGCGCCGCCGCCGCCGGATGCGGCACATACGGCTGCCCCGCCGCG
ACCTGCTGCGCCACCGGCGAGAGCACGGCCGCCCTCGGCGTCGGGGCCGGCACGTACCCC
ACGTACTGATGGTAGGGCGGTGGCGCTGTCGGCGACGCCAGCCCGGCATACAGCTGAGCA
TAGTAGTTCTGCAGCACTTGAGGGCTCATCATGGCCTGCAGATCACTCATGGTCATGGGT
TATCATCCAAACGCAGAAAAAACATGCATGGCCATCAGCGTGTCAGCCAGTGCCTGAACA
ATCAGCACCGATTCATTCACAAATGAATGACCGATCGATGACTCAAAGCTTTCCTCAAAA
TCCTAACGCGAACGGTGCAAGTAATCTTATCGATCTTGGAATGTTTGTGTCAAAGTCACG
GGTGCAGTGGTGCCAGCGAATCGTGAGGGAGCCGTGCGGTTCATCCAGGCAGCGGCGGCG
GAGGAGCCGGTCGCTGGGCATGTGGTGTGCCTGGGTAGCGCGCGAGTGGCATGCACTGGG
CTGGCTGGGCTAGTCACTAGTGCATGCTGCATGTGATAAAAGGTAGGGAAGCAAAGAAGG
TGGGCGTTGAGGGGGCACAGCAGAGCAAGGGGGACATGCTTACCTGTTGGTATTGATAGT
CAGGTGGGCACCAGTACCTGCAAAAGACATGGCAAAGCTTCTTCAGCGAGTGATATGATC
CGGGGGAAAAGGAAAAAAGGAAAAGGCTTGGGCCGGGCCCACTTGGCAGTTAAGAGGCCT
ACTACTTATCCGTTACCAAGGCTGTAAAGTCCAGAATCTAGATCATTGACCTACCTAGCT
CACAACTGGCCAGGACCGTCCTGCTTATAACTAGAAAAAACCCTGCTTCTGCTAAAGAAA
GAGAGAAAAATCCTGCTTTTGCTTAAAAAAATGAGAGAGAAAAAGACCCTGCTAAAAATC
TAGAAAAAAGACTTTTTTTTTTAACTTTTATGTCACCAAATAAAACTAGTCATGTTTCTC
TCTTTCCTTTGTCAAGGAAAAGAGATATACTTGCCCTGAAACGTACTACTGTCAAGGGAG
AAAACTGGTAGTAACTGCCGTCCAAACATCTGAAAACTAGGAGCGGCAATGGCGCACGCT
GGACGCATTAAAAACACTGCAACAAACCAACAGGTGCAGAAAATGCTGGCAGGCGAGGCA
ACACCCTGCATGGCGAAAGAGACCCACGTCACGAGCACGAGATAGGGCGGGGCGGGGGGA
CCGTCTCCGGTCCGGTCCGGTCAGCCTCCCGCCACCGTCGACCCAAACTCATCACGTCCT
CTACCATGCCATGCTTGTAGGTGTAGGTGTAGGTGTAGCCATGTGGAATTTGCAGAGAGA
AGACTAGAGGAGGACGATTGTTACCCTTACCCGTATCCGTATTGCTGCGAAGGGTGGTGG
TGGTGGTAGATCGCCGGGCCATGGCCAGGGCTGAGCATCAGGCCCATCTGCTGCTGCTGC
TGCTGCTGCTGCTGCGGATGAGCCCTGGGGCTGGCGATGTAGTATTGCGGGCCCTGCTGC
CAGTAGCCCCCGGGCGACGGCCTGCCTGCATTCATTCATTCATTCACGTTACGAGCAGTA
TTTACAGTGTCAGTAAATAGGATGAACCCATATATTTTTTCTTTTTGGAAACGAGGATGG
AACCATGTTATCCGCCGCAGAGCGGCAGAGGGGCGCGAAAGCAACAACACCAAGCAAGTT
AATGAAGCGGTACGTGCGCGCGTCAGATGCGTGCATGTCTGCACGTACAAACCGTACGTT
TTCGGCGCGCGAGGCGCTACGACAGAAGATAAAAATAAAACCGCTGGCTTCGGTCGACCG
ATTTCGATCCGCGGCGGAGAGCCGGGAAGAGGCCTCGCCATGTGCGCCGCGTGGTGGGCA
CTTTGACCGGCCGGTTTTCGGCAGGCGAGTACCGCTAACTAACTGTTGGTGCTCTCACGG
CTCGCAGAGTCGCAGTGGCAGGGCACGGAGGCCTTTTGCGTTGGCAGAGAAAAATATTGC
TCAGTACTAGTCAGGACAGGCTGCATACATTACATGAGCATCAAATTCTGGTTGGCCTCG
TGGCCCTCTTGGTGCTAAACTAGTGGGTTTTGGTGAGGAAAGAAGATACTCCTAGTAGTA
ATGACGAGGTAAGTACTCTACGTAGGAACTATTAGACCGGTCAAAGGGTATATACGTGGA
AGCATTTTCTATGGGTTCGTTGCTGGATTCTGTTTTTACCGCTGGAAAGCGGGGTTCCTG
ATCCTCCACTCCACCCGACAGTTATCTTGTGCTTTACACCACATCCCTGCTGCCATGCCA
TGCCGCAACCGACCACGCCACATCCAGTCAAAGCAAGCAGTCCCACTCCCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCCACTATTTGCTCTATTTCTTTCTGTAACACAAGATA
AGAAGCTACTGCTGCTGCTGGCACACTATATCAGGGGATCTGATTAAGCGGAAATTGGGT
TAATTTGGTCAAGGTACTACTGGTACAGGTGCGTCATTCAGGATTGAAATTTTTGATTAA
GCCCCACGCAACCATAACTGCCGATTCTAAATTCGATAACTGCCAGTTGGTTTGTAGTAC
TAGTACGGCTAGGATTGGCTGTGGCTAGAACTTGTGTGCGCATATATAGGCACGCGTGGA
CGTGGTGGTGGGGTGGGGCAGGCAGGCAGGCAGGCACAGGAGGACGCACCGAGGCGGCAG
CGGCACCGGGACGAACTGACAGGCCAGCCTGGTCAAGCCCGGCCATACGACCCTCGCGCC
GTGCGTGCCCGCCACACCCACACTAGCTGCTGCCTGGCTCCCGTGCGCTGGCATGGCATG
GCATGCCAGACGGACGGCACCACCCCGGCCGGATGTGAACGAGATCCGCCGCGGCCTCCT
CCGGATGGCTTCCATTTGGCGCGCACCGGCGGACGAAAAGGGGTTCCCGCGGCTCTGCTT
TGTCTTCGGAAACGAAATGTGCATCTGTCTATGTGTTGTGTTCGTGGGAGGGGGGATTTG
GGGGCGGTAATAAGGAAGGAGACAAATTTTGTTCTTGTTTAAGGTTAAGTTTTCCTTTTT
TTTCCCCTTGTGATGGCCGATGGAGGGATGGACGGATCACTCACCTCGAGGCTGGGCGGG
CCGTGGCGGGCCCAACGAGGCAATGTTGCAGTTGGCGCGCCGCCCGGTGATCGTCGGGTT
CGGGTCCTCCACCGCCCGGCGCGCCGCCTCCGCCTCCCGGAACGTCACCTGTTGCGCCAT
GCGTCGGTCCATCTCGTTAGGCGCGAGGGAGCAAGAATTCTTACAGCATGCCGCGCGCGC
GCGGCGAGGCCGGGGAAAGAGGAGGAGGGGAGGGGAGGGGAGAGAGCGCGCGGCTTACGA
ATCCGTAGCCCTTGGAGCGGCCGGTGAGGCGGTCCGTGATGACCACGGCCTCCAGGATGT
CGCCGTACTGCTCGAAGTGCTGCCGGAGCCCCTCCGACGGCGTCTCCCACGCCAGCCCGC
CCACGAACACCTTGGTCTGCGTCGTGTCGCCGAACCGCGACCGG