morexGenes - Barley RNA-seq Database

Contig contig_47774

Source Contig contig_47774

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_47774 (6405 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_47774

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63622	1	341 bp	None	Available	Available	LOC_Os04g12190.1, FRAME:-3, EVALUE:8e-37, 13104.m01117 protein hAT dimerisation domain-containing protein, putative
MLOC_63621	5	2268 bp	AK357056	Available	Available	None

CDS Structure of MLOC_63622

CDS Structure of MLOC_63621

Contig Sequence (6405 bp)

>contig_47774 6405 assembly3_WGSMorex_rbca.fasta
TCCACATTAAGAAGATAGGCACCATTCGTCAACACAGCAGATACGCGAATCTGCCAACCA
GCAAAAGATATGTAGTCGTATAATTAGAAATGAACCAGATAAGATCCGATGCAACGTACA
CAAGTAAATTTGTAGAGGTGAACACATACCAGTGCATTCATTGCACCAGCCTTCTTGTGA
TGCTGGAAACCTGGTCTCTTTTCACGAGAGACATACACAAGCCGTGGCAACTCATTACCA
TCAGTGTCAAGGCCACCACTGTGCCCCAAGAACACCTGAATCCACGAGAGGTAAGTTTAA
TACATAAGATTCAAATTAGGTTGACATTATTTTCAAGCGACAGCCGCATTGAAGTAAAAG
GTACCTGAATCATGCCAGGATGGTCCCTAGGGTTATTCCCAGGCCAAGCGGTGCCATCAG
CCATGGTCCACCCCTCTTCAGGCACTTTTTGTGCTTTGGCAACAAGTGCATTGATTCGTA
TTTTAAATTCTTCATACTCTCTCTGAAACAAACCATACCCCAACGTTAATATCCAAGCAG
AATTTGAGGAAAGCAATATAAGCATGTGGTTTGTAGCTTACCTTCATTGCTCGTCTTTCC
TTCACAAAAGAAGGCTGGATTTTGTCCTTTAGGTAATCTATTTTTTGCTGAAAGTAAAAC
TCCGGGGCCCTTGGTTCAATGTTGTGCTTCTTGCAAAATGGAACCCACTTCCTAGCAAAT
TCTGCAGTTTCTGAGAGCGACTCAAACGTCAACATAGCCGAACCATCATCAGAAACATAG
CATGACACTTTGTCGACAGGGTAATCCACAGCAAGAATGGACAGAACAGTATTTGCTGTG
ATCAGGGGAGGTTCCTTCAGTGGATCCACTGTACTGACAAAGATATCAATGGGACACAGC
TGTGATGGCTCTCCCTCCCTATCATACCTGCAACATTAGATTATGCACCTCAGGACACAT
AATGTCAATGAAAGATGTTATGGTGCCAAAAATCATGAACAAATGTAGACCCATTTGTCG
TAACTTACCTCAATGCAAGTCTGTCAAGGTATGTTTCACGGTTGATTGGATACCATTTTG
GAAACTGATCTAGAAGCCAAGACAAGGCAAACCAAATTTCACAGATAACAGACACTAGCC
ATAATCCATAAGCATCACGCACTGGATGCGTGACACGATACTGGAAGAAGAAGCACAGGA
TGATAAGTCGGAGAATGATCACTATCCTGTAAAGGTTGAGCTGGTTAGCAGGAATAGGCA
CTATACGGCTCAGAGGTAGACGTGCATCATCAACCCTGCCAAAGACAAAAGAACAGATTC
AATGAGTCATTTCCAATCGGACATCAAACTGCAACAACACTACAGGTAAAGCATAGTCAA
GACGAAAATTACATCCTAATCAACTCAGAAACATAAAGCTATCAGAATAGCGACTGATTG
TAATGGAGAAAGGTTATTTATACATTTGCATATCTTCACCATTTGAGCCAGTTCCTTCCA
TGTCCCCTCCTCCTCTTGCATCTGGATATTTATTGGTCACCTGCATCATGTTTTTGTCCT
GCTTAACCCTCCAGCTTTCGACTCTTTCCTTCCAGTCAACACTGTTAAGCCCATAGGAGT
TCAAGTCCTTCGAAGGGTCCACAATCCTCACAGGAACTGATAACAGAGTAGAGAAATGTT
AATATTTTCATTAGATGAGCAAACCAATTCTCCAAAAGAAGCTATTATGATAGATAAGAA
TATACCTGGGACACTTGGATCAACATAGCTTGATGTTGGGCTGCGGATAGAGTGGCGATC
AGGGGAAGCATCAGGGATTTCCCCGGAGATCTGAAAAAGATTTTTGATGCATTAATGCAC
AAGAGCAATGAATTCTTACAGAAACATGTTCATATTTCATCAATGCATGAAAAAACCAAG
TGTCCGAATGATAGGTATTTACCTGTTGCCCACTTGTCAGCCGAGGAATACGATGATGAG
GTTCATGGCGAGAGGATGAAGACAAATCAATGTCTTCTCCTTGACCCTGCAGCTGCCACT
CTGGACCTTTGCCATTCCCTTGCTTGTAGTTGAACTCATTGTCCAGGTCATCAACATCTT
CTTCCTCCTCATCTCCCGGAACTCGGGGGCTACCTGAATTTTGTCAACAAGTGATGTATA
CATCAATTAGCATGATTTATAAACAAAAACATAATAATACGAGGTGGATGGGTTTAATTT
TATATGTCGAGCAACAAGCAACGACCAGTATACCACGACTTTGGCTCTCATATAAAGCAA
TCAGAAAGCAGACTTCCATATGCAATTCTCATCCAGATCACATAACAAATCAGCATGCTG
TATAGAAACAAACCTTTCAGCCTCTTGTATCTAGTCTTGCACTGAGGACAGCATTTGACC
CCATCCTTGCGTTCATACTCATAGCAAGGGCGGCAGACCGGGAAGGCGCACTCATTGCAG
GCAACAAAGACATCACCGGTGGCCGAAACGCCAACAGTGTCACCACATATCTGGCAGCCC
TGACCACCCGCGCCTTTTACCTCCTTACCCTGCATCGGTAACATCAAAACAAGGTCAGCA
CACACCCGTGTGAAATTACACAGCTTACTAGGAGAAAGCAATCCCCCATGTACCATAGTC
GATCAGCAATTGATCATCTACTTGGCCTAAATTTGAAACTATGATCCAAACGTCGGGAAT
GGCATGAATTGCACGATGTTTAGGTAAGGTAGGTTCATCAGTGAATATGAAACGTGTGTG
TGATGAAACGTGTGTGTGTGGAAACGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGGGGG
GGAGGGGAATGGATAACCCTGGCGCTGAACATCTCCCAATTGCTCCACCGCTCGTCAATT
CCTCACATGAACGGGGCCACCATTGATGCACAGGGGGGATTCTTCAATGAATCCAACGGC
ACGAGCAACCCCGCAGATGCATACGTAATCGGGGGAAATTCGAGCTGTTACACCTAACAC
CGCAACCTAGATCCAGCGACTAGCGCGCGCACCAGATCCACCGACGCGCGGACACGCGCA
CCGCATGAACGAGACGTGACGAACAGAAATGGCACCGGCAAATTCAGGCACTGAAGCAGG
CAGGAAGAAAGAGGGGGGAGGGGAGACAAACGTACCGGGGCGGGCGCGTCGCCGTCGTTG
CGGATCATGACGAACTCATTGCGATTGTGCGACCCCGCGACCATCCCCCGGTTGGCCGCC
ATCTTTCGCTCCCCCGCCGCCCTCACACCCCACCGGCGGCGGTGACGAAGGCGAGAGAGA
GAGAGAGGCCGAGCTGCCGCTCTAGATCCGAGAGGAATCGGTGGAGATCGCCACCATTCC
AAGATACCCCCGCGCGTGAGCTCTCTCACAGCCCGCTGCTGCAATGCCGCCGCTGCTGCT
GCTCCTCCTCCTCCACTCCTCTATCTTATCATGGCAAGGAAGAAAAAAGTGCTGTGCTTT
GTCTCCTATTTCAGCGATTCCTGGAAGCCACCTTTGTGTGTGCGACTGTGCTCTGTGCAC
AGCGTGGGAGCGATGGAGTGTAAACAGCGCAGCTCGTGCTTTGCATTAAACTAACCCGTC
TGGTAATCCGTTCTTGTCCCAATAATGGCGGTTGAGGCGCCGCTGTCAATGGCCGTCGGT
GGCCTCTTTCTTTACTCCTCTGTCTCTGGTCTAACGAAATCTGATTGGGGGTCGGAATCT
TCTGCCATCTCGTAGCTCCGTGCATGGAAAAGGATTTGAGATTTGTCATCACATCCCAAC
AATATTCATTCATTTATTTGTGATAGTGGTAGTATATCGTCGGTGACCCCTGCATATAAT
ATTAAATTCAGATAATTTTAGAAAAAACAGGAATTTTGATATATCAAACATGGTGTCATT
ATACTCCCGCGTTTTTTTTCTTTTTTGAACTTTCTACTCCTGTTTTTAGTTTGGTGAAGA
AAAGTAAAACATCGTATCATGGTGAATAAAATACAATCCAACCTATGGCCATCCAAACAG
TTTTTTATACTTCCTCTGTTCCTAAATATATAATTTAGAGTGTACACTTAATCATTTTGC
TTTATATGTAGATCTCTAATAAAATTGTTTAAAAGACTTATATTTAGGAACGAAGGGAGT
ACATAGTTTTTATTTTCACTTTTTACTGAGAACACTATGGATATTCTTCACGAAATTTCA
CACGGAAATAGATTAGACACCCAGATTTGATATTTTAAAATTCCATATACTTGTGAAATT
TTCTACTCCCTCCGTCCCTAAATAATTGTAGTTGAGGTATTCTTTTAGATTTGATATTCA
TAGGGGAAGTGGCACCTGAGACAAAAGTGCCCTTCCGCTCCCGAGTTCAAATGAGCTTGA
TGAACAGTAAAATAAAATAAAATAAAATGAAATGAAATTTTTTAAACCAACATTAAAAAA
GTTTTAAGTGTGTGCAAAAAATTGGCATGAAATAACACTTTTATAAGGCGTGACCAAAAA
ACAGAATCGATACTTTGAAAATTATTTCATGCCGAATTTTTGCATGTACTTAAAACTTTT
GTCAATGTTGGTCAACAAAAAAATCAAAATCTTAAAAAAAAATATTGTTCACTTAGCTCA
GATGCAAAAACTCTACGTCCCACCCAAGAGGCTCACGGCCACAAATCCTCTTCCTTTATT
ATGGCCGCAACACTACTAAGATTTTAATGTCACTTCAAAAGTATGCTTAAAATGCGCTTC
TACTAACTATTTACCACACCAAAAAAATTTTACTTATGTGGACGCTACATCAGTGACGGC
GTGAGGAAATGAAGGTTGGGTATTCATTCAAAAAATCCTTTAAATATAGTATATGAACCA
AACAACACACAACTAGTAATATATGAACAAAACAACACTAGCATAACGGCATAGTAATAT
TCCAATGTATCACACCATAAAGACATGAATATGTAAGTACCTTTTGATTGATAAAGTGAT
GATATCCTTCTTACAATATAACTGTGTGGCCGCCTTTTTGGAAGAGATTGACGACATCTT
CATCCTTCACTTGATTGAAAAAATCTCTCTCGACAAATGTAACTAAACAATTGTTTGAAT
ATTCATCATCCATTTTGCTCCTTAGCTTATTCTTCACATACCTCATTGAAGAGAATACCC
TTTCAACACTAGCAGTAGCTACTGTCACAATCAATACCAACTTAAGAAACTAGTGAACAA
TATGATATTATTCTTGCTTGTTTGTCTCAACAAGCAAAACTGAAAGCTCACACAGAAAAA
GGTTTCGAAACCTTTCATCTCTACGTGCATTAGTAACATACATGTTTAGTTGCCATGAAA
GTCTTGTCAGTTTATCACTTGTAAAATCAGAAGCATAAAACTTTGTAGCAAGCCTAATCA
ACTTCTCTTGGTCATAAGCAGCAAATAGATGAAGTGGACAGAATGTTGCCATGCAAGAAA
GTAGCTCCATGTTTATCTCATCAAATCTGCCATTCAGCTCACTGATTTTCCTATCAATGA
CACCCACAAACATATCAACTTTGAAGCGGTGGTAATTGATCGTACTATTACATAAACCCC
TTCTAGGTCGGCCAACGGGTAAGTAAGGACCCTCCATATCAACAACTTTGATCTTATGCT
TTGTACAAAAAGATGTGACCTTTGTGAGAAAATCATCCCATCCAGCATCGGTCCTCAAAG
CCTCCAAGTAATACTTTGTGTCATGAACAAGCTCAATATCATGAACAATATCTTCATCTT
GCTTTTGCAAAACTCTACACAACTCATATGTGTATCCAAATATTTCTTGCATCGAGTGTA
CCATGAAAACAAACTCAAATGGTCGAAATGTTGTCTGTCGCTTGTGCCTCCGCACCATGG
TACTCGTCTCCAATCTTGCGAAGGACTCGTCGTAGTGCACCATACATAGAAATGACATGG
TTCACAAAAGCATCTCCACTGGGACATCTTGTTTTATCCTTGAACAAATAGCAAACGAAG
CAAAAAGCTCTATCTTTTTTCCACACTATACTCAATCCATGGAAATTCTTTAAACCAAAC
ACGACAAAAAATGACACTCTTTTCCACTTTTATTTGTAAACTTGAACTTATGATTCTTTG
GTTGACATGACCCCATCTCAATATATCTCCTTCTTACTCTATCTTAGTCATTGATAGCAT
ACACTGAGATGGGAATCCGCTTTCCAGGATCATGTTTGAGTGCCTCCAAATTTGTTTGCA
TTGATTCATAATCTTCATCAATGGAATCATCATCTTCTACATGAGGTGTTGAGGTTTCTC
CTCTACTCTCCGGTTCTTGCCATAACACTGAAAGTGCGTTATATCGACNNNNNNNNNNNN
AATAGGCGATTTTTACAAATTCATCGCTGAGGAAATTCCTAGTGA