| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_47704
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_63556 |
5 |
2131 bp |
MLOC_63556.4 |
Available |
Available |
LOC_Os03g20380.1, FRAME:-2, EVALUE:0.0, 13103.m02439 protein CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
CDS Structure of MLOC_63556
Contig Sequence (10618 bp)
>contig_47704 10618 assembly3_WGSMorex_rbca.fasta
GAGAAATAAAATTTCATATTTTCTTTGCTTAGAATTTTTGCTTTTAGATCTATCTATCCT
TGTAACCGAGTGTGAGAGTTATATNNNNNNNNNNNNNNNNNNNNNTGTGCTTTACTCTCA
TGCATCTATCATCATATCATTGATATAATAGAAATAAAAAGATCATATGATAATCACATG
AGGAGTAATGACTTCACATAGAAAAAGTATAAGTGATAAAAGTTGTTGGGAATAAACAAA
CATAGCATTAGTCATTGATACAATCTATACAAGATTATGATAGAGGAGAGAAGATTCACA
TATAAATACACTATCTTGGACATCTTTGATTATTGTGAGCCGCCACCAGATATTATATAA
TGAGTAAGTGTTGATGTTGGGCATGGAAGACAACATAATGACCATGATAGTTTACATTCA
CATAGAAGTTATTTTGTAATGGATCCTCTAACATGGGGTGCTTGCTTTAGATCTTTTGCT
AGCCAAAATTGTCCGCACTAAGTAGATATACTACTTGTGCATCCATAACCCTTAAACCCA
ACTTATTTCCATGAGAGTCCACCATATCTACCTACGGATTGAGTAAGATCCTTCAAGTAA
GTTGTCATAGATGCACCAAGCAATAAAAAATGCTCCTAGACATGTATGATCTTTTATTGT
AAGGGGAAATAAGCTTTGTACAATCTTGTGATGGAAAATAAATAAAAGCTATGAATTGCA
TAATAAAGTTTGCTATCATAAGGGGCAATATAAAGTCACATTCCTTTGGATTAAGAGTTT
GCACATCCAACTTAAAAGCGCATGACAACCTATTAACTCTCTAGTTGGAAAGCATCTTGT
GTTGGGGATGTATCCAGATATATATATCGAGTTGAATGTAGGAGATCATGAACCATTATT
ATTGACATTATCCTTGACGCCTTGTTCAGTTACACCTCTTCTCAAGAAGATTAAAGGAAA
CTGGGGTGGATTTTAACTTGTAAAGGATTATATCCACCTCAATCCGTGCCAAATCCCTCC
TAAATCTCTATCAACCAAACAAGGCCTGAGGTAAATAAGTTGGGTGGAAAAGTAATAAAG
CTTCTATCTTCCTATGTGTCCAATGAAAACATTAGCTCCAAAAATATTCAATGAGTGTCT
CCAATTGTAGAAGACTAAATGATAGTTGAGTATGTGAATTTTCAAATATGAAAGCTATTA
CATAGACCCTCCTCCTAAATATGATGAATTATGATTGCCTCGATGACTAAGAACATAGTT
TGTTGGTTGCCAATAAAGTTTATGCTTTATACTTCAATGTTGTGGATAGATTATTACTTG
TTTATGAGAAGCTATATGATGGAAAAAAACATGATGCTATGTTGATATTCATCATGCTCT
CTTGTCCGTAATCTGTTTTTATCGACACCTCTCTCTCAAATTATTTGGTCATTATTATCG
AGCTCGACTTTCGTTTGAGGAAAAGCGAGGTCTAAGCTTGGGGGAGTTGATACGTCTGTT
TTGCATCATGAATTCTTATTGATATTTATGTTATCCTTGTCCATTATTCCTTATTATGAT
ACAATTCTTACGGATTTCTCTCTGAATATGCATGGTACATCACAAGGCAGGAAATTACTC
AAAACTAGAATTCTGGACCAAGAAAAAGACTGAAAATATACTAGAGGGAGACCACCTGCT
GTCCACAAGCCAACACGGTGCGCCAACCCCCCCGGACGCGCCATGTTGCCTTGTAGGGCC
CTAGCAGGTCTCACGACCCCCCCCCCTTGTCCTATATGGTGTGTTTTACCCTAAAAATCA
TAGGGATAATTTCAGGATGAAGCACCGCCCACTCGAGGCGGAAACCTAGTAGAGGCCCTT
TTGCTCTCCGAAAGAGATTTCTACCGGGGAAACTTCCCTCCTGGAGGGGGGGGGGATCAA
AGCCATCATCAGCACCAACTCTTCCTCCTTCATGAAATGATCAATCATCATCGACATCTT
CACTAGTAGCATCTCATCTCAAACCCTAGTTCATCTCTTGTATTCAATCTTTTCTCAAAA
CCTCAGATCGGTACCTGTGGGTTAATAGTAGTGTTGATTACATCTTGTAGTTGATGCCAA
TTGGTATACTTGGTGAAAGATATTTTGTTTAGATCCTTTATTGCCATTATTAAACCTCTG
ATATTGAACATGTTGGTGAGGTCTGAGTAGATATTGTTTTTCTTGGTGACATGGGAGAAC
TCTTGTCATAAGTGATCATGTGAAGTTGGTATGTGTTGCTTCTCTTAGTGGTGTCGTGTG
AACATCAACTACATGACAATTCACCATGTTATCGGCCTAAGGGGAGACCTTTTGGAGTAA
CACGTAGATGATGGATTGCAAGAGTGACCGAAACTTAAACCCAGTTTATGTGTTGCTTCA
TGAGGGACTGATTTGTATCGACATGTTTCATGCTATGGTTAGATTTTTATCTTAATTCTT
CTTTCGTAGTNNNNNNNNNNNNNGAGAGAGGGTAATCATAATTGGGTTTCTTGTTCAAGT
AAGAACANNNNNNNNNNNNNNNNCCACCCACATATCAAATTATCAAATCGATGAACACGA
ATCAACTCAACATGATGAAGATGACTAGACAGAAGTTTCCATGTGTCCTCGGGAGCGCTT
GCCTCATATAAGAGTACTTTCACGCATTGTCCTTTGCTATAAAAAGGATTGGGCTATCAT
GTTACACACTTGCTACTATTGTGACTTGTCACTTGTTACGAATTATCTTGCTACAAAACT
ACTTATCACTGTTACTCATAGCACCTCCAGAGAATACCTTGCTAAAACTGCTTATCATTT
CCTTCTGGTCCTCGTTGGGTTTGGCACTCTTACNNNNNNNAAGGACTAGATTGATCCCCT
ATACTTATGGGTCATCAAACACCACGGTAGTTCTGCTGAAAATAGCATCAGTCTGGGTTA
GTTCCAATTAAATGATATAAAGTGCATCAAAACCATATAAAAGTATTGTAAACATAGGTA
AATATGTCATGAATACTTCATAAATTATCGATACGTTGGATACATATCAACCGAGTATGA
TGGGACTAAGGGCAGCTCTTACTGATCCCAATAACCGGTCAGAGGAGTAAAAACAGATTT
TACTCGTCTAACTCGCACCTAGCCAATTCCCAATCGGCGTTAGAGGAGTAAAAAATATAC
TGAATCGTGCCTCGCCTCCCGATTTTTACTCCACCACACCGCGGCCGAGTAAAACGAATC
CACTTTGCCTCCTCTGCCCCTTCTCCTCCCTAATTCCTGCCATTGGTGCCCCACACTATT
CTCGATGCCCCACCTCACCATGGCTGGACCGCACAACCAGCGCTCTTCCCGCCACCGATC
GACAAGTGCGGATCCGCGCCGCCACGCTCGCCATGGTGCTTCCAGCGGGGCCTACTCGTT
TCGCCACGCCGCAACATCTTTGACTTCCCCGACCTCCCCCAGCCACCACAGCCAGAGAGG
AACTACCTCAACATTCGGCAGCGGTCCTGGGGGACATGGGTGGTGGAGATTATGGACCGC
GAGACCCACACCAAGAAGTGACTCGGGTCTTGCGCCGCTCGAGTATTACCGGTGGCAAGT
CCGGTTCCGCGGCGTGGAGGCGCGCCTCAATATTCCATTGCCGACGACAACCATCCACAG
CGTCCCCTCGGCTCCCGGGGTGGTGAATGCCGCCATGGTGAGGAGGCCGGGAGGTGATGG
TTGTGTATATTATGCATTTTTAGCTCATTTGTTAGTGTTGTATTTTCTCTCTCTATATAT
ATATAGTATGTCCCATTGAACTAAATATGTCTCCATTATGCATGATTACTGGTTTTGCAC
TTATCATCGTGAGCATTGCACATTTAGTATTTTATTCGTTTTTATTTGTTTTTGTGTGTC
TACTAGTGTATTGGAGCAACCTAGGATCAAACATGATGAAAGGATTAAGGATGGGTTCAA
TACGAAGACACACACGGGTAGACTTAGCCATTTCGGATGTCGGAAAAACTCGATTTCCAG
ATTTTCCAAAATCAAGATCTAAGACCAGAAATGGATCGGCGTCATTCATACGGATCAAAC
AAGCCCACAAACATTAAATTCCAACTTCGTATGAAAAAATGACGACCGTTTTAGCGGAGA
AGGTCAGAATAAAATACGTTGTTTTATGCGACCGCGTCTGGTCGTTTGACGTATACATAC
CTCCAAAAGTTGCCTTTCCACATGGGATTCTCCATCGATTTCGTCAGAATTGTTTCCATA
GGATATTTGGCTAATAAGGAATGGTTTGGGAGAGGATAAGGCTCATCTAGAGCCCTTCGA
TGACCACGGGAAAGGAGAAGATATCGGGAGGCCTTCATATAAGCACCATCAACCCTAGGC
GCCTCACATCTTCGTTCATTCATCCACGCAGTTGTCATCCATCTCTATTGTTGTTCCAAG
ACCAGCTCATAGAGGAGAGAAGGGCCAAGCTAAGAGGAAGACGAAGGGGCGCGTCCACCT
CACGTGCACCGGCCTTCGGGTCGTTGCGGTCTTCACTGCCAGCCCCACAATCATCACCAC
CACCGGCGCCACCATGCTCCTCTTCTTCACTGGTTTCACGTCGTCTTGTAACTTTCCCTC
TCCATGTATGATGTTTGAGTAGTTGTGTTAGTTCCTGAGGAATTGGATGAACCCTTGATG
ACTAGTACTTGTCGAACAAGCGATCCAATCATTCTCTTTATATATTTTGCGTTGATTGTC
TCATTGTGTTGTGAAGAACGCTCACGCGTCATTAGCCTCTTGTGGGCTTGAGGCAAGTCA
TGTTGGCAAGCAGGCTGGTTGCGGAGGTAGGTAGTGACAACCCTATTCTCCCTTCATCCC
GGGTCATTGCACGAGGGATTAGTGCAATACCCTAGAACTTAATAATGTGACCATGGGGAA
TTTACTCCCTTAATCACTCCCTAGATCATTGTTGTGCTAATCGGAAAGGGGAAGCACGGT
GGTGACACGAGTGTACGCGGTAATCGAACTAAGGATGCGTATTTTATTGGCTCCGCCCAC
GTAAGATCATGTACAAATGGCTTAGTGATATAAATAGAAAGCCATGTTTATCATGTGTTG
TCGGCATCATGCTTGTGGTGATAGTTTAGTCCATTTAATTTTCTGTTTTTTATTTCTCTT
TTGTAGTTTAGTACACATTATCCTTTTATTTTCCTTCCTAGGGACTCACTAAAATAAGTT
AATTTAAATCTACGGTTTGGGTGCGTAAGAAACTATAGTCACGGGTTTTATAATGCCTTT
TCATCAGTTTTCTATGGATTCGACACTTACTTATCATGAAAGTGGTACAACAACTTTTTG
TACTTGCATGTCATCAGGAGGGGAGGGAGCGCCTCAAGGCAGAGGCAGCCGATGAGAAGT
ACATGACGGACCACCGCATCCGACACCCTTAGCTAGTGGAGGCGGAGCGGGCGGTTGACG
AGGAGGTCATCGACATCTGTGACAATGAGAAACAAGAGGAGAAACTCAACTCTCAAGAGT
GACGGCGCATCTCCCTTGACTCGAGCTATGACGGCTCTGGCCTGGACCCAATGAATGGTG
GGATGACCCGGGGCGCTCGCGTGTAGGGGTGTCGAAGCCAACAACGGACAGGTGGCTTCC
CCTTCTCACATGTATCTGGCCGGAGGCCGTGGTAGGGCGTCACAGACGATGCAGGGGAGG
CTGTTGGAGGGATGGGTAGACTGACTGCTCGTCACTGGCGCAAGGGCGCCGGTTCGGACG
AGCTTCGCTCCCCTTCCCCTCTTCCAGGCCTGGCCTCCTGGCTGCAGATCGATGTTGCGG
GGAGGGAGGGCCACCGGCAGTTCCATTGATGCTTGGTTCCCGCCGGTCGGCCCAAAGTCA
GCACCTTTGATGGTCTCCGGATTATCTCGAAGCGGGGCGACGGCCCTGGTGATGGGAGCT
CCTGGCTCGTGGGCGGAGCTCGCGGCTCGGGTGTTGACAGGCTCGTTGCCATGGCCGCAT
GGGTGGCATGGGGGTGGGCCTTCGACGATCTACGGTGGTGGTGCGGCCAGCGATCTCCTG
CCGTGTCGTACCACGGGCGGAGGTGGAGGGTAGTGGTCGAGGTCAAAACCTCGTCTGGTT
CGGACCAGACGATGGCGGGGGCGTTCATGCGCCGTTTCCTTTCTAAAGGCTCCATCGCGA
TAGCCCTGCGTCCTTCGCCATACTCTGGGTGAAAACCTCGATTCAGTGGATCGAGCGGTG
GCGGCTCTCCGATGTCGTTTCTTTCTTGAAAGCACCGTTTTAAAGTTTTCTGGGTTGTTG
GGTTTTGGTGTTGCTCATTATCAACCCCTTGTATCTGCCTTGAATGTATGTGGTGTCAGG
TTGTTTGGATCGTTGTTTTATATATAAAACGGAACGAAAGCCTTTTTGGGTAATTTGGCA
GCGAGTTAAGCCCGCCCAGATGCGGGCGCCGGCGAGTCAAAGCCGTCTGGCGCGTCCGGT
CAAGACCGGGTCGGGATGTGCCAGCGCCGCCGTAACCGGGATCGCTGCCGTGGCGCGAGA
GAGCGAGTCAAAAAAAGCTAAGGAAGCCAGTCAACCGGCGGGCGTGGGCGGGAGCAGATG
GAGACATGGCAACATCGGCGGACGCGGCTCACAACTCGCTAGGCTTTCATCTTTGCCGGC
AAATGTGAGAGTTCGTCGCTGGTCCGACTACATTTTTCTGTTCGCAGTTTGAAGAACACA
TCGGTTTCATTTTCACTGGTCAGTTAGGATTGCACGAGCTTCCTACCTTCACACACGCAG
CATCGCCGGCAAGGATCAGCATTTTATTTATTTAGAGTCATCTCCCCGGCTATAGCTACT
ACAATGCTACAAGTACTACAGCACAAACAAAGTTCAACACATTGCACTGTTCAATGTACC
CTCCTACCAATACAATCTTAGAACAATACGGCCTTTCGCCTCTGGACCATGAATATGATA
AGCAAACTAACGAAGCCATAGATAGGCTCTTCCACAGCAGGCTGCGCGCCCGCTGTTTCA
TCGGAGCCTATTCGATCATCATCATCAACAAACGAACGAACAAAAGAACTTGGTCTGCAC
AATCCATTCCGCACCCTCCATGCCCCATCCCACATATCAAGGAACTATGTACATGGAAAA
CCAGCGCCGATCGGTCGGTGAGTCTCAAAATGTGCTTCATGCCGCGGTGCTGTTATCTTC
TACCTCGCCGCCGCACTTCCAAACTACGTCCTTGAGCTGGGTCGAGAGAGATCTGTAGAA
CTGTTTCACAGTAGAATAAACTCTTGTTACTTGGTTGTGCAAACAATGCCATGGATCCGA
AATGCTATGCAATTATAGGTATGTGGTTACTACAGATTATCTAGAAGAGATTAATTCCAA
TACAATAATTATTTATACGTCAGCTTTACTTTTTTTTTAAGTATTCAGAGGTAATCAAGA
GTTATACGATGTTTGCAGCAGACCTCAGATGGGCCTATTTTATTAGTGTTAGACTTTGTC
CAAAGTTGTTCGTTTAATTAGCAGTGCTTTGCTATTGCGAGTATCAATTCTAAATTCGCA
GATAATTTGGATGGAAAAGGATGCTATGGCAGCACCGCTCATGATTAGTACGTACCATTT
GAAATTCCAGAGTATCCCCCTTCGCCTTTTTCAGCTCAACCACATGTAGGGATGGAGCTA
CTTGAAACACCTGAATGGTTGCCACATAAAAAAAATATGAATGGGTAATCCTTCTTTAGT
GTTCGAAATAGTTTGTTTGTGTGGTGTTTTCACTTGCCTCAGTTGCAACATTGAGATTGC
CTTTTCTACCTGCTTTCGGGTTCTCCATCCGCATCTGGAAATAACAAAATCAAAACTAGT
TCAATTTCCTGCAAACTTCGATTATGTTCAACATATATACAAATAATTTAATTGTAACAT
AAGATGTATGGACATGTAGACAATAAGCAATATGAATACCTTGTAGTTTTTCTTCTGAAT
GTCAAATCCAAGTGGCCTTGCAGCTTCAGCAATCTTGCTGATGATTTCTTTTGGAGGGCA
TTGCGAGGTGAATCTTGTCTCTCTTTTATGCTCCTGCCACATAATTCGTACAGATAAGAA
GGTTGTTTCTAAAGGAAATCATAGGCAACAAACAGACAATAGAATATGGGAAGTCAAACC
TAATAAGACAGACATATAATGGCTATCTGCAGCAGAAATATTTCAGAATTTGCAGTTCTT
ACCTCCTTTGCCTCGAATAAATTGTCCAGATTCAGTCCCTGATTCAGCGAAATCAGTTCA
AATGCATTCATTGAGGTTGGCTTATGTTCAGTCTCCTCTTTCACATGTTGGTCCTAGTAA
ATTATTAATAGATACATATAGTTAATCACTTATTCCAACCACAAGTGTAAGCATTTTAAC
CATGTCAGGTCAACTGCCTCACCTCTGAGTCTCCAAATGCAGCATAGACATCATCGAAAC
TAGTTTCATACTTATCATCAAAAACAGGTGGCTTGAATCCCTTTTTGAACCAAGGATCCT
CCAGTATCTGAGGAATGGTCATACGCTGTTCAACATTCAACAACAAAAACAGGACAGATG
AGTTGGGATTGGATAACTTTTTTCCAGTACTGAGAAAGTAATGGTACATTGGTACAAGTC
GAATTAAGGAGTACTGGTGTTTCATTTGTAGTACTGCTCATAAGTCTGATTCTCTTTTGA
AAGGATTATTCTTAGTGATTTCAACAGCCATATTCAAAAGCTGTATCCCACTTACAGTTG
AAGGATTAGGGTCCAGAATTCTGGAAATCAACTTCTTAGCTCCAGTAGAAAACCAAGAGG
GGCACGTGAACTGAGCCTCTGAGATCTGTTATTCCATGAGGGAGTAAGAAGAAATTATAA
GCAATAATATCATCTCAGATGTTCTTACAAATTTTTGTATCTTTGGGCAGTATTGGTATT
ACCTTTTTATAAAGAGCGATGATGTTTTCATCCTCGAAAGGTAAAAACCCGGCAAGCAGA
ATAAAAAGGATTACCCCGCAAGACCAGATATCTGCAGCTGCGCCATCATAACCTCTATCC
TCAATCACCTGCGGAGAAATCGAAGTTAGACAATAGTTCTAGGCTTCTAGTGGATTGGAC
ACATGATCTTACTATGACAAGCAAAACAAAATTACCTCAGGAGCAACATAGTTCGGAGTT
CCGCATGTTGTGTGCAGCAAACCGTCAGCCTGTAGAGTCGAAGAATTTCAGTAACAGTGA
GAATCAACACAAGGCAATGATGTGACTAGCTCGAATTTTTTACCCAAAGTAAGAGTATAT
CTTAAAAATACCTTGACTTGCTCAGTTAAAGCACTTAAACCGAAGTCGGACACTTTGAGG
TTTCCAGCAGCATCAAGCAACAAATTTTCTAACTGCAAATGCAGGTTTAACATATTTTTG
TCACTTTCATGTACTTGTATGTGTATAGTTAACCATAGAAGAACACATGACCCAGAAGAT
AAGGTTTTTACCTTCAAATCTCTGTGATACACACCCCTACTGTGGCAATAATCAACGGCA
TTTATCAGTTGTTGGAAGTATTTGCGTGCTTCCTCTTCTTTCAACCTTCCATTGGTATAC
TGTGTATAACAGCAAGTAAACAGATTAAACAGATGATCGTGTAACATGAATGAAAATCTA
ACCGACAATACAACAGCACCAATTGCAGATGGATGGATGGCATATTGGCACTTACAATGG
TATCAAAGAGTTCCCCTCCAGTAATGTATTCCAGAACAATGAAAATTCTTGCTTTACTTC
CCATCACCTGAGATGAAAAGCAAATATTAGCAAAAAGGTACTAAGACCGCAGCCATGAAT
AAACACAAATGTACTAAAGTATGGCAATAAATCTTGAATCTTCCATTGATTTTGGGACTT
TACCTCGTGCAGTCGGACAACATTAGGATGCTTTATTAACTTCATAGTGCAAATTTCGCG
CCTAATCTGCATTGAGTTGAGGATGGTATTAGGATACAGATATCAAATCTCACTATATGA
GCACATGTATGAAATAATATGTTTCAGTTTTGACAATGTTTTTTGTGGCTAACAGAAGTC
CTTGTTTGAGGACTGTATGGTTAGAACTTGGAACTTGGAAGAGCACCAAAGTACAGCAAA
GGCAACAAGGGACACATATGTGTTCAATTTGCACAAAGTTCAGACATCAATTAGAAACTG
CACAAGATATTAGGAGAACATTCTGAGGTTGGTGATATATGACTTCAATTGGAAGATCAG
TATGTGGGTAAGATCGCTATGTAATGCAAATGTGTAGATACGGAATCATTCTTAACTGAA
GTCACACCTTCCTATGCCCCCATGCTGGCACGGCAACATCCAGGGAAGCTAGAAATGGTT
TCTCCAGTTAGCTCCTTGATATAAAGGTGTACAGATTATACTCCCTTTGTCCTAAAATAA
ATGTCTCAACTTTATACTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTT
GGGACGGAGGGAGTAATAATGAAGAAAGATTGCAACTGTGCATCTCAGCAAAAAGGTAAG
AAACATAATCCTTTTGCTGGCTGTGGTAAAAAAAAATACTACTCCCTCTGTTCACTTT
