morexGenes - Barley RNA-seq Database

Contig contig_47670
Source Contig contig_47670
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47670 (7838 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_47670

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63530	1	1510 bp	AK252740.1	Available	Available	None
MLOC_63529	1	1967 bp	AK363395	Available	Available	None
MLOC_63531	1	366 bp	MLOC_63531.1	Available	Available	LOC_Os07g32350.2, FRAME:-1, EVALUE:4e-22, 13107.m03274 protein WD domain, G-beta repeat domain containing protein, expressed
CDS Structure of MLOC_63530

CDS Structure of MLOC_63529

CDS Structure of MLOC_63531

Contig Sequence (7838 bp)

>contig_47670 7838 assembly3_WGSMorex_rbca.fasta
GCCAAGTCCGAGCGCGACGGTGAACTGGCCGCTCTGGAGAAGGAGAAGTCGGCTCTCAAG
GCGCAGCTGGAAGCCAAGTCCGAGCGCGACGGTGAACTGGCCGCTCTGGAGAAGGAGAAG
TCGGCTCTCAAGGCGCAGCTGCTCGCCAAGACGGAGGAACTGGGGCTCAGGACCATCGAG
AAGGAGCTCAACAGGAGGGCGGCGGAGGCGGCAAGCAAGCAGCATCTCGAGAGCATCAGG
AAGGCGGCCAAGCTCGAAGCAGAGTGCAGAAAACTGCAGGTGATGACATCCTTCTTCCTT
GTTGGTTGGTGGTGGTTTGGTTTCACTGGAGGCATTATATTATGTCCTCGTGTGTTTTGG
AAGCTAACGTCTGTGGAGTTTTGGGCAGGCCACTGCACGTAGACCCTCCTTCAGCAGCGA
CCTCAGGCGCACTCCGAGCTCCCTCTGTGCCGCCGAGTCGGTGTCGGTGACGGAGACGGA
CTGCCAGTCAGGCTCATGGGCATCGGCTCTCATCGCCGACCAGTACAAGACCGAGACAAG
GAGTGGAAGCCTAGCAACCGCAGTCGACATGGGTATGAATATGATGGATGACTTCCTTGA
GATGGAGAAGCTTGCGTCAGCCAACGGCAGGAGCAATTATGCCGAGGATACCGGTGGTCA
GCTGGTGAAGCTAGAGGAGAAGGCCAGGAAGCTGGCGGCCGACAAGGACAAGGACAAAGC
TTTGCACGAGCTGAGGTCTTGCCGCCATCAGGAGAGATCGGCTGAGATGCAGAGGCAGCT
GAACCTCGTTAATGGAGAGAGGGAGGCGGCCGAGAGGAATAAGAGGAATGATCTGGAGGG
TAGACTTGAGCTGGCCCATGGCGAGATTAACAACCTGTTGGACAAGGGACGCATCCTGGA
GGAACGCCTCGACTCGGAAAAGGCGCTAACGCTGGAGCTGGCAGCGAAATATCAGCACAT
GGATGCGCTGGAATCGGAGACCAAACACCTGCGTGCTCAGCTCCAGTCTGACGCCAGGAA
ATACAGCGACAAGATCACCCTGCTAGAGAGGAGGCTCACAGAGGAATGCCGTGCCGTCCA
AGCTCTGCAAGCAAAGATCAAGGGTGCAGATATTGAGCTGGAGCTGGCACAACAAGAAAT
TGTTTCATTCCAAAAAAAGGTGCGTAGCCTGGAGCAGCAACATAAGTCATTGTCTGTCGA
ATCCGCAAAGCGGTGCCATGATCTCCAAGCAGAGAGAAATGAGCTCACATCTCAACTCCA
AGCTGTCAATTCACATGTCTTTGCCCTGAATAACAAGGTTAACATGCTTCAAGAGACCCT
GGAGAAACAAGGGCCGTTGGTTGCACAACTGGAATCTCAACTCAAGTCGGCGCAAGCCGA
AATCAAGGGCTTGAAGGAGAACGCCAGGCTCTTGGAAATGAAACTGGAGACACAGAAGAA
CTTGGCATCAGCCTACATAACTGCACTGGATGCTTCCGAAACCCACAAGAACGAAATGAC
CAACCGGTTCAAGCTCAAAGAGAAAGAAGCAGAGGAATCGCACAGAAAGATTTACTTGCT
TGAGGAACAAATTCTCAAAGAGAGAGCAGAATCATCGGAATACGCCTCGCAATGCCATGA
CTTGAAACAGGAATTGTGCAGCAGAGCTTCAGGTCATCAACCAAAACCTATGGCAAGTAC
AGACCTCCATATAACCAAGGTAAATTTTACGGTATCTCTTAACTATCTCAACCAAGTCTG
GTGATGAAAAGTTGAGGAGTTTTAAGTTATGTTACTGATGAGTAACTGGAATGCAATCAC
TTTCTACAGGAGAAAGAGCTAGTTCGTGCTGCCGGGAAACTAGCAGACTGCCAGAAAACA
ATAGCATCACTGAGCGCGCAATTGAGAACCTTATCCGACTTTGATGGATTCATCCCTGGA
GTTGAGAACCATGATATCGCCTTAGCTGAAAGCTGGGATGGCGATCTGAAGCTGTTTGAT
TCAGCTAGTTATCCAGCACAGTTGGGCTGTTTGGCAGTCACATGACTGGTAGCAAAGAAA
GGTTGTGGAAAATTATATTGCTTGGCTATCACATAATAAGATTGACAGAATCCTTAGCTG
ATTCCATATGGAGACAAGTTAATACTCCCTCTGTCTCAAAATGTAAGATAGTGACAAAAA
AATGTATTACATTTTGATAGAGGAAGTACTACCTTCATTTTTAAATATAAGACCTTTTAG
AGATTCCACTATTAACTACATACGGATGGAGTACTAGTTTATACAGATGAGAGTAAAGGC
TCATATGAAAAAGCACTGTTCATATGGAGAGATGAAGTGTATAGCCTGAGGGAACTGTGT
GTAAAAATTAGTTTTGGTCAACTTGTCCCATGAAATTATCGAAATTCGTCTGCAGCACTA
TCTGCTCACCCAACACTTGCATACGTACTTATCATCTGATGTCAATTGGCAGAGATCCTA
CACATTTCGGCCAAAATAGTTCCAAATTTGAAATGTCCAGGAACAACTTGCATTAATTTC
ACTACACCAACAGGACTGACGTTGTCCACGCTAAAGTAGGCCCATTGTTACTTCGGTACA
AACTAACCAAGATAAGAACGCAGAGTCAGATGATAGTATAAATGAACCATACCGTTCGGT
TTTGATAATATTTCAAATCACTTATCATAACATTGTAAAACAGCAGGTAATATTTCAAGG
AAAAATTACAAATGAACCATACCATTCAAGTTTGACTGAACTTGTACTTAAAAGGCATTC
TTTTACAAATTCACAAGGCAAGCACCGTGGTCAGAAGTCAATAATTCCAGCAGACCAAAT
GTCTTACGCAACTTGTTGCTTCTTGCTTTTCTTTTTCGTGCCTTTGCTTCTTTCGCCGGA
TTCAGATTTTATTCTCTTTGAGGCATACATCTCAGCATCACTGTCATTAAGGTCAGCCAT
CTGAGTTCCTTCCTCATCCTCTGCAACCCTTCTATTCTTCTTTTTCTTCTTTTCCTTTCT
GACTGTTTCACCATCGCCTTCATCCGGGTCGACCATTTGCGTTCCATCATCCTCGGCAAC
CGTTTTCTTCTTTTTCTTCTTCTTTTCCTTTCTGACTGCTTCAGCATCACAGTCATCAGG
ATCCACCATTTGAGTTCCTTCCTCATCCTCTTCAACCAATACATTCTTCTTTTCCTTCTT
TGCCCTTCGGACTTCAGCAACCATTGAAGAATCCGGCTGCTTGGATTTATTCTCCTCAGA
TTCTAGACACGACACCAGTGTTAGCACAGTATCTCGAGCCTCAAAGCATCCATCAAGATG
CAGTTAAGATGTACGCCATTGTAACACTAAATGTCAGAACTCAGAAGTGTTCCGAGTAAA
AAAGAAGCAATATTCAACTAACTAAATTAATGTTTCACATCGGATGAAACAAGTTAGCAC
AGTTCAGTTCTAAAGGAAGCACTTGCCCTTACAACAATCACAATTCAAGATAACATGAAT
GTAAAAAAACAATGGCCACTCTCACATCTAACCTACCACAACAACAACAGAAAACAGAGA
ACATAGCACAGAAATCTACTGAAAAATGAAAATACATACAAAACTCCCGCGCGCGCGAGA
GAGAGAGAGAGAGAGAGAGAAAGGGAGAGAGGGAAGAGAGATACCTTCAGCTGAGAAATG
TGAATCAATAACCACTGTTGTGAGGTGCTGCTTGAGATAGACCTGTTACCAACCAATGAC
ATGTGTTAGATCATGAAGACTTTAAAATGAAGAACCATGGTGTATAACCAGTATTGCAAT
CACTAAAGGCCAATTAACTATAGTAAAAGGTTAGCCACAATAGAAACAAAAATCAACCAT
CATATATAGTGGCAAGTATTCCCTCCGTCCGGAAATACTTGTCAGAGAAATGGATGTATC
TAGACGTATTTTAGTTCCAGATACATCCATTTTTATCCATTTCTGAGACAAGTAATTCCG
AACGGAGGGGGTAGGAATGAACTTGCACAATCAATTTTAGGATAATATAATTGTAACATG
CATACTGCAATGCACATTGATATTAGGGAGAAAGTTAATTGCACATTGATATTAGGAAGG
GTATCAATTACACGTTAATCGCATGGATAGTGTAGATGTTGATATTTTATATGCTATTAA
CTGCACGCTAAACATGTAGAACGCTTGCCATTGGAGCAATATAAGGTCATTGGATTGATA
TGGTTTGATGGCTGAGATTTGTTGGATCTACCCCCTTTGGGTCTTTTATATTGGTATATA
GATGTTTTGTTAGGTGTTAAAGAGTACCCCAAGATTAAGTTACAAGATATTTGGCTAGTC
AATGATATCTTCATGCTCACTACAATAAATTCATTTATATGAGCAATCTGAATCTGATTG
TATATTGCAAGGACCAAGAACAAACTTCAAACTTAATCTGAATGCTGTGAAATTAATTTT
AGACATACAGCAGAAAGCGGCTGCCTTGTATTTGTATCCCAGATTCGTAAGTAGCTGTCC
AATCCTACAAAAACCAAAATATTATCCTGAGTTAGTTCAAATAAGTGCAAACAAAGATAT
ATAATAACAAGTAAAAATGTACAACAAAATTGAGGGAATGTATAACTACATATTGCAACC
AAAATAAATCAATCCAAAATAAATGAAAATTTATTGCTCACCGCAAGATGCTATCAAAGG
CAGCTCCGGATGCCTAGCTATCGACCTAATACTTCCACTGCATTTACCAACATAGCATCC
GAGTAGTTTTCCTGGAAAAAAGGTACACACCAATCACAACGCTGTAGAATAAGTTATATT
CGCATAAATTGTACCTAGGGTTGTTATTAACCATAATCATTTGTCCATGCCATTGTATTT
GTCCATGATCTGTTAAACATTATACATCCAACTCTTAACATGTAGAAATGCCGGTGTTCA
AGAAAGCGTTTTTAAGCGACTCTTAAGCGCTTTTGCCCGAAGCGGTAGACTAAGGTTTTT
TTTTTATTTGGCTGTTTTTGAACTACTTTTGCTTGTCTGCTTGCGCAATAATGGCAATAT
GCCATTTATCTTATTATTAGGCCCTGTTGAGAATTATTTCCTTCATATTCTGGCAAAATT
CTGGCCAAATGATCTTTATTAGGATATGACTATTTGAACTGAACTACATTTTAGTTGTTA
TTTTGCTTGCCATGTGAACCTGACATGTATTCGCTATGGTGTGAACTATATTTTAGGTGC
TATTCAATTACCCATGGGCCATGGGCCCTATTTTCCTGTGTATAATATTCAAAATCTGTC
CAATTCTAGCCAATTTCGAAAAACGCTTAAGCGCCCATTGCTCTAAGCTGTGGCCTTCCT
CTTCTCTTATGCTTTCCGCTTTTTTGAACATTGAGAAATGCTGATAAATATTTCAGCTCT
ACCATTTCCATTAGCTGCAACTACATGTCACTAAATAAATGTAAAATAAAGGAACAAACT
AATATAGATATCATTATTGCCTATACAAAGCAGCACGGCCTGAAGTCTGACAATTAAGTA
GTAGAGTTGTGATACATAAGTTGAAGTTTAAGGGAAAACAGGTGTATTTCGAAATTCAAG
CCTTCAACATTATCCAAAACTAGTTACCGAAAATGAAACTAAGCTACTTTAAAAAAATAC
TCAAGTGCCATTAAAAAGTACTGTCCGACATCTGCTTATCATACCAGTTCTCATGTCAAA
GGAAGCGAGGTCTCCTGTTGCTGTCCCAATATAGACAGTATGTCCATCTGGATCCCCTAC
AACTGCCTTGATTGGTGACTCCCTAAAATCAACTGAAACAACAGATCTTCTTTGCGAAGC
AGTATCGTATAAGCGAACCTGGCAAACACAAAATGGAAACACAATCAGTGGTAGTAAAGT
TGAGCACTCATCATTGGTGCAGCATAATATATTACAGATGCAAATGGTCGTAGCAAACAT
CCGCAGCTAATCATTGCCTAGCATAAAAGAAAGTAGAAACACACCAATTAAGCCAATGAA
TTGGTTCCATTATTTGCGAGCTATGAGGTGACCACACGCATGTAACAGGCATCATAACAA
AACCCCATCAACTAGCAGCCTTGCAGTCAGAGAGCTGAATTGGTTAGATTTGTTGAATTC
TAACATAAACATTGAGCAATTTTTTATTCATACAAGATTATATCTGAAATTCTATTAGCA
CAACAGTGATGAGGTATGGTACCTGATGATTATTTGTACAGGCTACAATTTTACGGTGAT
CATCCTTGCACAGGAAAGTTCCAGCAGTGAACCAAGGTTTAGTAAATATACCAACATTGT
TAGCTCGGGGCTGTAAGATCAAAATAAAATTAATATTGATAAAAGTTTGCTAGAATATGA
GCTAATAAGTCAAAAAACAGAATGGCACTTACAGACTTAGCAGACCATATCTTACTACAA
GATGTGATATCCCACAAGTTCACTTCCATGCCATTCCTAAAATGAATGAAATATCTGTTA
AAAGACTACAAAATTCCTGAATGATTTTCACATCTCGGACAGAAAAGCTGGTAAATAAAA
GGAATGCAGCACAGCAGAGGCATGCAGTATTAGATAATGGCATGCCAAAGGTAGTCAACT
CACCCTCCGAACATTGCATAGTTCTCACGAGCATCAACAGATGAAAACTGCAATTTACCC
TTGTTACACACGTCCCAAGTGCTTGATGGCCCAACATCCGAGTCAGACGGCGTGTTTTCT
TTTGCAACAGATGTCACACTTGCTTTGCCCTTGTCCGTACAAGCAAGAAATGTACCTAAC
CTGCAACGAGCAACTAGATATAAATACAATTTGTCCAGTATCACCAAAATGCAGAGGAGC
AACGAACTTTTCAATGAAACATGGATAGTTAATACAGGTGTAGACGTGTGGTAAGATATG
TTATTAATGGGGAAAATTATGAGCATGTGAAAATTACGTGGATAAGTCTGGTGCATGTTT
TGTGAAGAGGTGCAGGGCGACTATGGGATCATTTTCCACAGCTCCGGCAGTTTGGTCTGT
CCTAGAGGACTTGACAAGGGCCAGAGCATCACCATTGAGGGGATTGAGCAACTCGACCTA
CACAGAAACCTTTGGAGTTAACAGCCAACTGAAAGAGACACAAGGTAAGCGTCCCAGCTC
TCAGAAGCAGCAGTCACTCACCACACCGTTCTTCCTTGCGACGGCCAAAACCTGCAAAAC
ACAAGCAATCGTGATTATAGTTGACCAAGGGCTCATGAGAGAGAGAGAGAGAGAGNGAGA
GAGAGAGAGAGAGAGAGGGCTGAGCCGGTAGAGGGGGCTCACGGGGTCGACGGATCGGTC
GGCGAGTGAAGCGACGAGGATGGCCCTGGAGGCGTCCGGTTCGCCCCACGTCTCGACGAC
CTTGGCGACGCCCGCCGGCCTAGCGCGGGCCTCGACGACTGCGGCGTGATTAAAACGGAG
AAGGAACAGTAAGCAGCAGGTGGCGGCGGAGGGGAGGCGGCGAAGTTGGGTAAGGTGGCA
GTACCTTTTATGAGGCCGAGGATGTCGGTGGTGATGGCGCGGAGCGGCGGGCACCCAGGG
CTCTCCACCGAAGTGATCCGCGGCATCCTTCCTTGGCTTGTCTTTCCCCGGTGGAGGAGA
GGAGAGGACACGAGAGGAGAGGCGGCAATTCGGGGGAGGAAAGGCAGACAGACAGGGCTT
CTCCTTCTCGTGTTTTTAGGGTTTTAGTGGATGGATGCACTGCAGGTGCAGGTTGAGTCT
GGGCCGGGCGGCGCTTCTTCCGTTTCCGTGGCGGCCGTGCAGGGTGAGTCTGGGCCGTGC
AAAAGCCTGAATGCCCAGCCCGGGGGGGGGGGGGGGGG