morexGenes - Barley RNA-seq Database

Contig contig_47628
Source Contig contig_47628
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47628 (7973 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_47628

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63482	4	2499 bp	MLOC_63482.3	Available	Available	LOC_Os07g47030.4, FRAME:-2, EVALUE:2e-128, 13107.m10044 protein expressed protein
CDS Structure of MLOC_63482

Contig Sequence (7973 bp)

>contig_47628 7973 assembly3_WGSMorex_rbca.fasta
TAGATGAACATCACCATGATAAGTATAGCGTGTGCGTAGGAATTTTTTTTGTTNNCCATG
CGACGTTCCCCAACAGTTGCTGCCTTACAGTATGTGGATGATACCATTTTGTGTTTTGAG
GATAACCTGAGAGATGTGCTTAATATCAAGTTGTTGTTATATCTGTTTGAAGTCATGTCG
GGATTGAAAATTATTTTTCTGAAAAGTGAGATTTTTTCAGTTGGGGCTAATGATGAAACT
ATGAGAAACTATGTTGAGATGTTTAACTGTGAGATTGGGAGTTTTCCCATCAAGTACCTG
GGTGTCCCAGTCAGCTATGCCGGCCTTAAGGGGAGTGACTGGATGTTTGTGGATGACAAA
TTCATTAACCATGGGGAATCCTGGATTCGTGAAACCTTATCTAGTGGTGGAAGACTTATC
AAAGTTAATGTTGTGTTATCTCACATTCCTTCGTATTACATGTCTATGTTTCTGATAAGT
AAATCAACTCTAGAAAGATGGGACAAACCTAGGAGGATTTTTTTTTGGTATCGTAATGGT
AAGAAAAGAAGTTATCACATGGTGAAATGGGGGCGGGTGTGCAGATCTAAAGTAAAAGGA
GGGCTTGGAGTGAAGGACTTAAGAAAACAGAATATTATCCTGTTGACCAAATGGTGGTGG
AAGTTAGAGAAAAAAGAGGGGTTATGGCAAGACATTGTGAGAGCCAAATATCTAAGAAAA
TCATCAGTGACTATGGTTAAACAGAAAGTTAGTGATTCTCCATGCTGGAAAGCGCTTTTG
AAAGTTAAAGATTACTACATGGCTGGTAGAGGCATTCATTTAAATAAGGGGAATATTGCT
AGTCTTTGGCTAGATGATTTGGGTGATAATTTCAGATAAATTTCCTGACCTGTTTGATAT
CTGTGTGAAACAAAATAATACTGTAGATAAGATTAACACTATGAATCCTAGCTCTTCTTT
TAGAAGAAGGCTTCCCAATGAGATGCTCCAATGGAATGAGCTTAAAAGTTATGTGTTGAA
GAAGATTAATATGGGAGAGGAAGATGTGATATATTGGAAGCTTGATAGTTCTCAAGAATA
CACTACCAATAGTATAAATCTGTTGGGCACTGTGGTTGGCTCGTAATCGTGCCACTTTCG
AGAAAAAATGGATAAATACTCTGTTTGAAATTGTTTTCACAGCCTGTGCGTTTATTTAAT
ACTGGGCAGGTTTGCAGAAGCCGGAGATGGCTGGAGTGATCAAGAAGGACGCATAAATGC
TGAAGGAGAACGCGTCGCAAATGCTGCTGCTATGCGGGCCACCAATGCCAGAATCAAGCG
AGCATGCTAATGAAGGAGACAGGTGGGAGGAATGGTGACCTGGTAAAAATGTTTATCATG
CTGGTGGAATAGCAGAGTTAAAGCTGGAATTGTTCCATTAGTTTATGTTTAACTGCCTGT
TGACCCAGAGTGGTGTTAAGTACTTGTTGTTTGGTTATGTTGGTCTGATAGGGTCTTTTG
TGATACTATGTGGTGGTAGTATCTCCTGTTCTGGGCGGATATCGCTTTTTGTGATACTAT
ATGTGATGGTAGTATATATCTGCATACGATGGGTTTCCTGGTTTGCCCCGAGTTCGCTTC
TTTCCTTTCCCTTTCTCTATTTTTTGTTCGGAGAAAACTTTGTATTTCCGTTATGCTTTA
TAATGAAAAGGGGAGAAGCCCGGTTCAAAAAAAGTCATTCGCAGTGGTGTTGCTTAAGAG
GCCCTCCGTCACACAAAAGACATAATATATCTCCAGAGGTATAGGGGAAGTCAGGAAGAG
TATGGGTTGGTGCAAACTTCTAAATGAAAAGAAAAACATCTTGTCAATCTCAGAGGTTCG
CCATTCAAACACCTGCTGATTCTGTGCAATAATTCCAAACTTACGAGACCAAATAACTCC
ACAGCTCCAAGCATAAAGATCCAAATAACTCCACAGCTCCAAGCATAAAGATCATTATTA
ACAATGTTACCACATTATCCTGTCATTACTTACAAGTTTGTTCGAATAAAATATGAGCAA
ACCATTCTTTGGGTACCATCTTGAGCAGTCAGTGTGATATCATTTCACGGCGGTTTACAT
AACTTTAACTTTTGGTTTGATCTTACGACCGTGACGATGTTCACTCGCGTAATACCAATG
TGGCTTCGGCACCGGCCAACTGTCATTGATATAATTTAAAACGTATCAGGCATATGAACC
CATATAAAACTAGGTAACCAGAACTTATTGATACATGTTACAAAAACATACCTAGAATTA
AGCTTCTTTGTAATACCAGCAGCAGCAGGCCTACAGTAGACCAAAGGATGGATTTAACAC
AATGTTTGGAAAAAAGGATGGTTTTAACATCTAAGGATAATTGAATGCCCAATAGTATCA
ATTGAATGCCTAATCTGGTGTTTTACAAAAATCTAATCAGATACAGTCGCCCATTAGATT
ATCAAGTTAAATAGGATTGGGAGGATAGGGAGAAATGGGTAAAAGCCACCCTGAGAGGAG
CGGCACCTGACCAGCAGTAACTCCAGCACATGATTTGAGGCCTAGAGCCTTAGTGACTAT
GTTTGGCCTCGGCTTTGGCATATTTTAACTAACAATAACTAGCAAGTATGAGATTATTGA
GACCATAATTATTATTATTATTTTAGTGGGATTGAGACTATAAATATAGACAAAGTGCAA
AATCAACTAAGAAGCTTACACATCAGTGGCAAATTAAATCTGAAAATTACCATAAGACCA
AAGATAGACCAACCAAACTGAACCCAAATTCGGCAATTGTCCACTCCAAGACATATGACC
CAAAATTAAACTAGAAAGGAACAAACTGACGAGTCAAGTCCACTTCACGAACACTTCAAT
ACTACTTCCTCCGTTCCTAAATATAAGTCTTTTTAGATATTCCACTACGGATTACATACG
GATGTATATAGGCATACTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTCATAGTG
AGATCTCTAGAAAGACTTAACAGAGGGAGTATGTAAAATGAGAAGTACTGGAGCACATGA
ATACCATACAAAAAAAAGATAGAAAGGCATACCGCATTGCATCAAAACTCCTTAATACTT
TCAGAATTATCTTACTTGGCAGGTAAGGAGTTCCTTCCGTGTCATAGAAGTTCATGCCAA
CAACATTCCCCTTAAAATCAAGAAGGGGCCCTCCAATTCCAGCCTATAGCAGAAAAACAA
ACTGACACTTATCAAAGGTTACACAGGAAAAGGTGATGTTTGTAGTATGCATACTGATGT
AGTCGCTTATCCATACGAAACTAATTATTTCCATCATGCAAGAAAAAAGAGAAATTAAGT
AATCAACGAAATGTACCTTGGTGATTTTACAGGAGGAGATCTTAAGCTCTTCGCAACCAA
ATTTGCATGTTTTGCCAGTCACTGACCCCTCTGTAGCCATACTATTGCCTGATTTGAAAA
CACGGCCGAGAGCTAATACCTCAGTTTGTGGTGCATCAACCAACATTGCTGGACGATTAC
AGCGAAACGGGATGCTGATAACAGCAACATTGTAGCAGAAATCATATTTTTCTAATTTCC
CTGTAATGTACCCCTTACTTGGAAGACACACTACAATCTGCAATGATGAAGTGAGACTTA
ACTAGTGTCTTGATGAACAAGTAACGAGTACATAACTACTGGTCTAGTACTACAAACCTT
CAAGTTATCAACAATCTTGTTTTCATCACCAGAAGTTCTAACCAAGCTTGCTGAAGTCAG
AACTCTTGTCATGGATGTGGATCCATTGAAGTCTATACATACACCTGTGCAAGCAAAATG
CCTTCCCACGACTGCAAAGGGTAATTTCAGTCTTAACCAGAAATCATATAAAATGTAAGA
TAAGTGGAAAATAACGAGATAATACCGTTACAATCGCCACTGTATGAAGCGAGTGCAACA
ACACTCCGAGACATCTTTGAAGCAATTTTGCTAGCAGGTTCACTCAAGAAATCTCTGCCA
AATTTCTCTTCAAAACTACCTTCCAAACGCATGACTCCTGGTTAAATAAATGTGACAGAA
CAGTTAAATGGGATGGCAGAGTAGAACAGTCCCTAATGTGATATAAAAGGGAATGGTCAG
CACTTAGCAGAATCAATAGCAGCAACTCACCATCCTCATAGTCTGGTAAGGGGTAACCAT
CAGAATTTAATTGAGCATTTATCATCTTTGTGAGGCCTAGTGAGACAAGGTGAAGCAATT
CATGACAATGTGTAAGCAAAATAAATACAAATGTTGCAGCCACAAGAAGCAATTCATGAT
TATGCAAAGTCATGATCAGTAAAACGAAAAGCATACCATTAGATGGCCACGGATGTAGAG
TATGCTTATGCCCATTGTTAATGAGCTCTGGTGTAGGTACATTCTCAGTAAATTCTAGTG
CTACAAGATGAAGACATCAATGACTATATGTCAGTAATGAACTAATGATCGAAAGTTAAC
ACTGGATTATTAAGTTGCATGATAGTAAATATCAGAGGTGACTCTGAATTGATTCACCTT
GTGGCTCAGGGTTAGAAGATAAAAACTGTTTCTGGTTCTCACTTTCACTTCCCTCACTAT
AACCATTTTGATTGGAGCTACCTATAATAAAGAGATAGAACAGACAGACACTGAGTTCTA
TGCTGACCATAAAGAGTATGAAAAAAGTAACACTGAAGTGACAAAGAATAGCATGTTATC
CCATAATTTAGAAGCCTTAAAAGAGTCAACATTCTTAACTCACCTTCAAACTGGCGCCTA
AAAGCACTGGGAAAACTTTGCCAGCAATGTCGTTGCATTTCGTCCCTACTGCATAATGCA
GTAACCTCATCATAATGCATACATAATAAATATGATTGATTTTTCTTTAACATATCACAT
ACAAGTATGATCAAATGATGTCTAGATAACATACCATATCCAAGCATCCCTCAAACATTT
ATCAATCTTATTTCCTAGCACATATGGAGTTCCTTCCTGATTATGGTAGTCATTCATCCC
AACAATACTCCCATCAAGATCAACAAGTGGACCACCACTTCCCTCCTAGCACAAAAATGA
AGTGTGTACATAGAAAAATTGTAAATTTCGAAGCATACAAAGACGGTGAATATAATGATT
CGACAAATATGGAGAGAAACCAACAGTGCACCATAGTAATTTTGCATGTGGAAAACATAG
ACCCTTTGCTGTCAATTTTACTTGGGTCATCACTCGGTACCCCATGTGCTTGCATTAACT
TGCCTGACTCGAAGCAACGCACTAGAGCTAACAAACCAGTATGCTGCTGGACTTGCACGC
TGTTACTGAAACATACTGTACTAAGATCAGGGGAATATGTAATGACCACAGCAACCATAT
TGGAAGGCAAATTATAACGCTGTATCCACCCATCAACAACTTGGTTATTTGGAAGGCGCA
CTTTTATCTGTAAATGACATGAAAGATATACAACATGATTACCAAATGACTACCAATATC
TAAAATAAGCAAGCTAGGTGCAGAACAATTGGCAGCAAAAACCTTCAGTCTACAGATGAA
CCTGCGTTCATGATCTGATGTGCTAACCAAAGCTGAGGAGGTCAGAATAGATGTATTACG
TAAAGTGTTTTCAACAACTATGCCTGTGCTTTCATAATGCAGCTTGTCTCCTACACAAGA
TCATTATTTCAGTCATTGTCAATAGATGATCAAATATAAATGAGGGAAACTACTAGGAAT
ACAATAGTATAATCACCATCAAATGAAGCAAGCGCGACAATGCTTGAGGAAAACTTTGTA
GCAAGTTCTTGACTGAGTTCCTCCCAACAGAGTTTTTGTTCCATTCTCTCCACCCTATCT
TTAAGATCACTCATCATGCTGGATAATTCCTTTACGCGCTTACGGTTTTCTTGCTGACCA
TTTAAGCCTCTAGCTCTTCGCTTAACTCTTAGCATCATCACTGCAGAAATTGGGGTCCCC
ACACAAGAAAGTTAAGAATTTTTTCTTCAGCGTACTTTGAAGAATTTTGCTCAAAATTGC
ATGCAAGTAACTTGCACTTCGAAGAAACTTCCATCCTGATCAGAGAACATTCTTTTCGGA
GATAAAAGTACAAGATATATCGCCTCAAGGCCTCAAGTCTTCCAAAGCTTGGCAATTTCG
TCATCGACGCGGTATTCAAAATGTATAACATTGATCCCTAGTTTCTATTATTATGTATTT
GTAAGACCTAATAAAGGTATGATATGATAGGAGTATTCAACACAAATCATTCCCAAGAAT
CCAATTTAAATATTTTGAAAAACATAGGTAACCAAAGTAGTAGCTAGAGATTGACTATAC
CCTCGTCTAGAACGCCAAGTTCTAGAAGACTGGAGGGGGTAACTTGTTAATTTGAATACC
TAACTGTTTTGGCCCATATCTGCCGAGGCAGATCAATAGAATATGAGATCCACAGGCGTG
TCTCTTAGCTAGTGTTGTCATATTACAGCAAGTAGGAAAGAAAAGGGCAACTTCCATGCA
GAGCCAAAAAATATCAATGCCATCCTCCTAGGGTCCATCCCAAAAAGAGACTTCCCAAAG
AAGGATCCTGGCCAGAAAAAAAAAGACTTGAATTCTCACACGAGCAGGATAAAAAGACAA
TGGGTTTCGTAGTTTATAGCTTGGACCAAAGTACAGGGAGGAGCACCATCACTTCACAAC
ATTGTTCACACGGAGGGGCAGGAGGAGAAGATAAGATGAGATGAGATTTAAAAAAAAAAA
ATCATTGCCTCATTGGCAGGGCTTTTTTTTTAGACATTGGCAGGCCTAAATAAGGTATCA
CCAGAGACTGCAAGCATGCTAATGGGCTGAAAACTAAGTGCGTTATCCAATCAATTCACC
AGTCAAATCCACCAAACCAAACCCTAGGACTCAGCTTGTGATTGCTGAAGTGTGTTACCA
GGGATGACCATTGGGCACATGTAAAGGGGTCACCAGTGCCAATGATCATGTCGACCGGTG
AAATAAAGCCCACGGGCATGTCCATCCGTATAATACAGCCCATAGACACACCCGCTACCA
GCAACCAGCATAGAACATCGTTCATGCTAGTCAACAGCCACCAACCACCTGAGGCATGCC
AGCCAATGCATTCAACTGAGGTGCAGAGCAACAAAATAGGCAAACAAAGTAATTCTGGTT
CGCAATCAAGCACATTGACTAATGATATCTCCCATACTTCCAGTAATAAACTTGCCAACA
ATCAAAGAGACACAAGTGCACGTACTTCAAATGTTCAGTGAAGTACATAGCAGCAAGGAG
ATACCTTTGGCATATTCCAAATTTTTAACACAAGGTAAGTACTAACTACTGACCTAATAG
TTCACAAGCAATCAGTCTTGCTTGCCTCGGGAAAGAAGCTCTAGTATATAGATAAACAGG
CATCCATAGATATGATACTAGCATAGGAGCTGCGAGTAGCAGCACCCAGCCGCACCAAAG
GACTCGCAAAAACGTCAGTTTGTAGTTCCTGAGGTGTGCTAGCACCAATTTTTCTATATT
TAACGCGAACAGATGAAGGGCATAATCATGAAACGAATCAAACAACTAGGGTTCATACCT
CCGATTTGGAGAGGGAAATCACGAGATGAGATGCTGGTTGCCGACCCGTAGGCCCTGTTG
GCCTCGGCTCTGTTCTCTGCGGCCGTTCCGGCTAGCTCTACCTTGATCCAGAGGAGGGAG
TCGAGATCGCACAAAAGGGATCGGAAGGAGATACGATGAGAGGATGAGCACGTTTTTTCT
ACTAGCACTAAAAAAAAGTCTAGATCCAACTATAAATCTGGACCCTTTAATTATATATTA
TCAACGGATTAATTACGCTGTTAACGAAACTATAAAAACTCCCTATACTCCCTAGCTAAC
GACGCTAACGAAAACTCCCTACGCTCCCTCGCTAATGAAACTCCCCTCTGATT