morexGenes - Barley RNA-seq Database

Contig contig_47550

Source Contig contig_47550

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_47550 (6754 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_47550

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63391	1	877 bp	None	Available	Available	None
MLOC_63392	1	843 bp	MLOC_63392.1	Available	Available	None
MLOC_63394	1	1018 bp	None	Available	Available	None
MLOC_63393	1	1367 bp	AK248724.1	Available	Available	None

CDS Structure of MLOC_63391

CDS Structure of MLOC_63392

CDS Structure of MLOC_63394

CDS Structure of MLOC_63393

Contig Sequence (6754 bp)

>contig_47550 6754 assembly3_WGSMorex_rbca.fasta
CGCAGCCTAAGCTGTGAAAAAAATTGCAAATCCCTAGTTAGGATTTACAGTTTCTGTCTT
GAATACCCTTGTAAAAAAATGCAGATCTCCACTCATCGTATTATTTTCGATTGGAAATCT
TTTCATGGTCGGTAAGACTAGAATAAATACATCCGTATTAGAATACATCCCATATTCGCA
TCCAAGCGGGGCCTAAGCTGTGAAAAGAATTGCAAAACGGCGATGGTTTCCCATGAGGGA
TAATTGCAAAAACGGCGGGAATAAAATGGAGATGCGGGGGATCGAACCCCGTGCCTCTCG
CATGCAAAGCTACACCCCCTGTAGTTGATATGTTCCTACTTGTACATGATCTTATCAAAT
AAATATTCAGTAAAGTCGGGAACTCCTCCTGTCTTACATGCATATCCTTGAGCTGACAAC
GTCCGTTGTTTTTTTAGTAGGTCAGTCGAGCATCAATGTCATAGAGAAGTTTAATACGAA
TTCATAACTCTCCCAAAGAAAATGAAATTCAAAAGAGAGGACATATACTTGTCTTCACTT
GAGAAGCCCCCTGTGATCTGCGGCCACCTAAAAGGACTTAAGAAATGCAGACAATAAGCA
CCTAGCTCTCCGGCCGCTCCTAACAATGCTAAGTATCATTATGTTAAACCCAATGCCCCA
TGTTCCATATGCCATGTTTCACAGTGGTCCAAGAGAGAAACGCCAAGACAATGTCTGGAT
GCAACTTGGACATGGAAAGGGAGCACCAGAGGTAGTTTAACTTTGCCAATGGCTAGTCAA
ATCTGTAGGGACTATCTAGCCCCTTGAGTCCTTGACCAGTTGCATGTGATGTATGGATCA
TCCAGTTAAGTCTCCAACTCCAAGAGAAGAGGCCAACAAGGTGGCAATGATTGGAGAGAA
GCAATGCAAGGAAAATGCTGGTTGATTAACTCAGCTTAATTAGCTGGTCAAATGTGCGGA
CTGAGAAGGAGGCAGATGGTCCATGGCCAACCTTATTCCATGTGGAGATCAGATCACTGC
CATTTTATAGGCATTGCATTGTGTACTCTACTCATTAGGATCATCACATTTTTAGTTAAC
TGGTACTTCAATTAACATATATAGAAGTAGATTATTGTACCATCACATATATGTTTGATA
AGTACTGGTACGAGTTAACTTTCCAAACTTGATCCATATACTACTATGTTTTTTTCCATT
GTTTCTTGAGATGATAGTTTGATGAGTCCGGACCATACAGATGCTGCGGTTACAGATGCA
AGGAACAGTGCATCTGCGTATGATACGTTTGTAACTAACCGGTTGGCCGTACCTCTCCAC
GATCTACCACACCTAGACTTATATAAGCACTTTGCTAGCTACCCCAGCCGATCTGAATCT
GTAGGACGCATTGTCATACTCATTTGATATTATGCTCTGCGTGCCATAGAAAATGGATGA
TGAATGTTCCATCTGATCACATGAAATCAGTCAAAAAGATCAACTCCGAAGAAGAGGAAG
ATTGTAGGTATTTCGGCCGGACGGCGGTGGATATTAGTCAAAGATGGCCTCACATGGCCC
CTCAAAAAAAAGTCGGAATGAACGAACAGCGCGCTCCCGTAATTTTCGTCAGGGTAAACT
CGACGCATGTAAAGTGGCAACGCACTGAAAAACCGGGGCGCTGCGCACATATTCTATGTA
ACGCTAGTACGAGTAGTTTCTAAGGAATTGGTAATAGTGTGGATGAATCAGCTGTCTGGA
ATGGAAGAAATGGATCCAGATCTCGGGGTGACATGTTCCCACAGCTCGCCCCATATGCTC
CGTGACTCCCTTTTGCTCCATCCCCGACTAGTATAAGACATGGCGTCACATGTTCCCACG
TACTCCCTCCGATCCACCAGTGGAAGCTGCGTGCACTTGAGCAACGCATGCTGCTAGTCT
CCACGCATTATATACGCACGCCGTAGGAGACAAACACTACAGCTCCAACTCTTCAACTCC
CACCACACTGCAAAGTCTCCAACCTTACGGTCCGATCAAGTGCCATGGAGACTAAGCAGC
ACCAGGCTGCAGGCAGCCGCCGGAATGTCGTCGTCGCCGTCGTCATCTCTTGCCTCCTCG
CCTCCATGCTCCTGCTCCATCTCCTCTTGCTCACCCCGTCGACGACAACAGCCGCCGTGT
CTCTCGGCGCGACAGCATCCGCCGTGCCTCTTGAAGCGACAGCATCGCCGTGGCAGTGGC
AGTGGCAGCAGGGTCGCCGCGGTGCTGCGGCAAGGAGGTTGCTGCTGGCGGTCCAGCCTA
GACCCAGCACGGCCATGGGCACGGAGACCAACGAGTTCCACGTCGAGGGCGGTCCTCTTC
CGTCAGCCGCCAACGGCAAGCCCGTGGAGGTGGGGTTCGACGCCAGCATGAGGAAATTTC
CCAAGAGCGGCTCAAACAAAAATCATAATTAGTCGGGGGAACTGAATCTCCTTCCTTCCT
TTCCTTCTCTCTTTGATCAGCTGTAGCTGTAGCTGTAGCATGTAATATCTTTTGCAGATA
GCACTCACACTTGTAGAGATTGAAGACTAACCTACCTTAGGACATGTGTAATCTAGTGCC
AGGAAATAATTAGTGTTTATCAATTTTTGAGAGACAGAGTTTGCTCCAGTGCTGACGTGA
CCCCGGATGTATCATGTATAGATCGTCTGTCCATGTCAATGACTATCTTTTGCAAGTTTT
ACCACAACCATTACCTGACCTGTACTACCTCAAATCCGAACTCCTTGTGTCCTACGTACT
AGATTTCCAGCAAGCCCACTTCCTTGACACAGTGAGTTGCGTGTAATCTTCACCACTATT
AAATCAAACATCATTCATGCTCCAAACTAGCAGCAACACCAATGAGTCAAAAGTAATCAC
TTGAACGAAGAGGGGGGCGCTAGAGAGTTGCAGGGCAAACATTATAAAATAATAATAAAT
AAACGTGAACAACAATATGAGTACATGAAAATAGTTACAGTTCAGATCCCATCTATTCGT
AAGTTCTACAACCGAGTAGCCCTAAAATGTTAACATCATTGGGCAACAACAATTTAAGCT
AACAGTATCACCCATTTGTTTGTCTCTGAGCTAATTAAGCAAGCTATGCAAAGAAAAGTC
TAACTACTTCATATGGTCAGGAAGTATCGACCAAGCTTTTCAGACCAAAAGGAACAGTTA
TACATCACACAAGCCGTACGCCTATTTTCGTAGGCAGTGATCCTGTTTCGCCTACAGGAC
CTGTAACCTAACCGCATAATACTCGGGGATTATTGTTAATGTACAAAGATAGCACAAGCT
GCTGCCTTTATACCCCGACATTCATAAGATAACATCATTGCCGCTGGACGGATGGAGATT
GCTGCACCTGAACTGGAGGGAAGAACCCAGTGCTTGAAGTTGGGAAGAATCCAGTTGATG
TTGGAGATTGCTGTGGTGCCTGTGGAGACTGCTGCTGCTGGTGGTGGTTCTGCATGGGTG
GCAGAGGAGGTGGAGGCGGCGGTCCATTTGGCATTGCAAAACCTGCAGGCAACAATGGAA
GTGGAGGTGGCAAAGAGCCAGCCATCATCCCAAAGGGTATCATTCCGAACATTCCTCCAG
GACCTCCAGTATTTTGACTAAATTGCTGCATAAGTTGCGGCACCATAGGCTGCAATGGAG
GTGGTGCAAATGAACCTGGTACTTGGTTAACCTGTGCTAGTGACTGTGTGCTTCCATGAG
AAGTAGGTGCCGCTCCTATCTGTTGTTGCACTTGTGGTACTTGGGCAAAGAAAGGGGGAG
CCCCCGTATCACCAGCCTGCTGCTCTAGTCTAGGCCTCTTTGGTCTGTCAAAGCCGGGAG
GCCCTGAAGAGAGTTCTCCAGAAGGCGAACCCCCATTTATGGAAGCAGCTTGTTCAGCGG
CAAGAGATGAGAAAATGGAGGACAGCACTTGCTGGCCAGATGATAAAGATGCAAGCTTAT
CTGCCATAGCTGCTGCGGTTATCTTGGGCTCATCAACCATAGCACTGGTCATGGTGGGAG
GTGAGGTCGCTTGATGCACTGGCTGAAACTGAGGAGATATTGGCCTTGCTTCTGAATTCT
GCACCGCAGCAGCTGTTTGCTCTGATGTAAATGTAACCATGGATGGACTAGAACTAGAGC
CTGCACCATTTGTAACAGGAGCACCACCAAGTCGTTGTCTGAGTTGCATGGCATGTTCAG
CCTCTGCTCGAGCAACCTGTTCGTCAATAAATTAAAGGATAAGCCATAAATCACTAGTAA
TTCCACAAATAACTGCTAAAATGCTACTCCTTCCGTCCCAAAATAAGTGTCACAAATTTA
GTACTAAATCAGTACAAATATAGTACTAAAGCAGCAACACTTATTTTGGGACAGAGGGAG
TACTACATAGGCAGAAAAGACCGGTGATAAAGATAGCTAGCAGTGTTAAATCAAGCAGTA
CATTAACAGGAAAAGATGCTACATATAACTATACTACTCCCTCCATCTACATATATAGGG
CCTAATACGTTTTTTGAGGTACCTTTGACCAATGATAAAATTATATCATTAGAAATTCCT
TTCACATACGAATTCGATAGTATGCTTTGTGTAACATGCATGTCATATGTTATTGTGCTA
ACCTGTGGTCAAAGGTAACCTCGAAAAAATGTATTACGCCCTATATATGTGGATGGAGGG
AGTATATGTTTGAAACTTTCAGCTTAAATTTGCAAATAACATGTTTACTCTACGTGAGCC
ATTGCCCTATATATACATCTACCTAAACCTATCTCTGACCTCTGTTAAGGAGTATTATTA
GTATTAGTATTGGTCTAGGGCCTTATGTATCCGTATTAGTCTAGATGTTCTTACTTGTAC
ACCAAGTCCCAGATATGCAATACATAAGGCCCTAGACCAATACTAATACTAATAATACTC
CTTAACAGAGGCCCTAGACTTGGATGTATTGCACACCTGGGACTTGGTGTACAAGTAAGA
ACATCTAGACTAATACGAATACATAAGGCCCTAGACCAATATTAATACTAGGTTATCAAA
AGAAGATGGCACATCAAGAGAATAAATCATTGTGCAAGAAATCGTAGCCCGAGAAATCGG
CGGCGAAAGAAGCTCGGCAGCAAGAAAATGGACATAGATCAATGACAATGCAAAAGGAGG
CCATGAAATCCCTATAGAAGACAACAAGGACCAGAAAGGCCACAAAAATTGTATAGTAAG
GACCAGGGCCAGGACCAGAGAAGAAAGCTGGCATATAATGGTTTGGTGGACCAGCATGGC
ATGAGAAACACGAAAGAGCAACGGACTTGCTGGACGCAGTGGGAAATAGAAAGCTAGAAG
CTAGGAAGCACACATGAGACATTGATGCATGAGCCGTCATGTCTGCAAGAGGGGCTGCGG
AGGAGGCCGTGCAGGTGAGATGCCGACGAGGAGTAGCAGAAAAGAGCAACTAGTGGGCGA
GCACACAGCATGGATGGTGTTGAAGTGTATCTGTGAATTGCCTTAGTCCTTTCCATCAGT
TCGGATTTTTGGTTGCGTTGCGTGCATGAAGCTTAACATGGTATGAGAGTCCAAGGTCTT
GGGTTCATGTTCTGGCTTTCGCAGTTTATCTACAAAATCGTTGCTGCCCCCTTTGTCTAC
ATATAGGCATCTTTAGCCATACCTCCGAGTCTATCCATGTGTTACTTTCCGCGTCACACA
TGAGAGGGGGTGTTGAAGTGTATATGTNNATTGCCTAGCCCTTTCCATCAGTTCAAACTT
TTGGTTGCGTTGGCTAGTGCATGAAGCTTAACATGGTATCAGAGTCTAAGGTCTTGAGTT
CAAGTCCTGGCTTTCGCAATTTATGTCCAAAAATTGTTGTTGCTCCTTCTATGTCCACGT
ATAGGCCTCTGAGTCTATTCATGTGTTGACTTTCCGCGTCACACGTGAGAGGGGGTGTTC
AAGTGTATCTGTGGATTGCCTTGGCCCTTTCCATAAGTTCGGACTTTTGGTTGCGTTAGT
TAACAGATGAAAGGTGCACCACCATCAAGAACCGCCGGATAGCGCGAGAGGGAAACTGTG
CCCAATGATGACATTGAATATATACTTTTTTGGGGGAAGGGGGGGGGGGGCAGATCAGAC
CGAAGCTGGCTCAACCTCGCACAAACAGATGTGTTGTCTTCCTTTGATGCACCATCTTCT
CGATTCTCCCCCTTTGGCTTGACTCAACGGGTTTTTGAAGACTCTCCATGCTATGAGCAC
TCTCAAGACACAGATTATTGGGTTTTCACTATTTGTATTAGTGTTATATACTTCTTCAAA
TGCAATACTATTGCATAGTCTTTGCGTTTGAGAGGGGGGGGGGGCTAAGGAGTATTATTA
GTATTGGTCCAGGTCCTCCACCTCTGAACCTTCTGATACGATCAGATTAGCTTCATATGA
AGCTGCAATTGTTAACATATATGCATGGGCACATCATTCAATCAGCAAATACAATCGCAT
AGTGTCGGGGTACACAAACATGGGTATTTATTTCCCCCTGAGTCACCGACCCGGTAACCC
AAGGCTGCCGGAGAATGCTGCCACTCCTTCAAGACCTCGCCAGGGCCAGAGGAGCCGCTC
TACGAGAGGTCAAGGAGCGCATCAAGAAGACAAAGACTCCGACAGACGAGGCCCCCAATG
TCCGACGATGCCGGCAAGACCTACACCAACAGCCCAAGACGTGCCAAGAACCTCTGGCAC
CTGCCTGGGGTGAAGGCACAAGCATCCTCACCAA