morexGenes - Barley RNA-seq Database

Contig contig_47528
Source Contig contig_47528
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47528 (8694 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_47528

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63376	1	2271 bp	MLOC_63376.1	Available	Available	LOC_Os01g60700.1, FRAME:-2, EVALUE:0.0, 13101.m06460 protein serine/threonine-protein kinase NAK, putative, expressed
CDS Structure of MLOC_63376

Contig Sequence (8694 bp)

>contig_47528 8694 assembly3_WGSMorex_rbca.fasta
CTAGGGCATATTTCCAACAAGCATCATACAGGTTGCTCCCCTAATTGCATATCTTGACAA
CATATTTGTTGCTAAACTTATTTTGTTTAAAGAAAAGTTTAAAATTTGTTAGTCATCTAT
TCACACCCCCCCCCTCTAGTCAACCATATCGATCCTTTCACCCGAGACGTTTGTTTTCGC
GTGTGTCCAATAGTCTAGTGTCTTCGTTAGGTATTTGGCTATATATGGCTTCAACTCAGT
TGGTTTTGATGTCAGCGTCAATTAAGTTTCCTCTAGATCTCCCTGTGAAGTAGTGGTTCT
CTTAGCTTTCGGTGTTGAGATCTGGAAGAAGGTGTCAACGCTGCCTCATGTACTTTGGAT
CTGGGGGATAGTTAGTGTGTCTTCGTGCTGATGTCGAAGTAATGTCTTCTCCCTACTCTT
TTGTGGTGGTGGTGGTGTTGAAGACGGCTAGCGGCTTCGGCGGTGGAAGGTCGTCCTTTG
GTTATTGGGTTGATGTTCCCTCGACCATTTTTTGATGGTGATGAGGTAACAGCCCCCCCC
CCTCCCCCCTTCCCCTCACACATCACACCACCCTCATGTCTTCGTGGCGTGAGATATAGC
TCTTTAGTGGTTAGTGTTCCCTCTCTGTCGTATCGACACTCTCTCCGTTACCGTTGCAAA
GTAGACGAAAGTTTTGTTCAATACATGGTTTCGCTTTGGGATTTTCAATATACACAAGCC
TTCCACAATGATGGCTTCTTCTCCAGCTAGTTAGTCTACATGAACCATAACACGATGATT
TTTTGACCCCAAGATACAAGGTCAGACCGGCTTCAACAATGGAGCGGAAGCGGCGACGCC
GCTTTCGGCCCATGCTGGAGATTAAGTTTCTGTGGTTGTGTGTGAATTTGGTTATAATTT
TCTTGTTTTTAAGAGGTTTCGTATCACCCGAAATTTTTAACAAAAGTCCATAGTCTTATC
CGGGGGAAAAGACTGTCCTTCGTGGGAACCTAGTAAACCCGTCACGCTTGGTCTACCCGA
TCAATCATAGTACTACCTCAGTTGGATCTGGTTAGGTGCGGACCTTCTCATGCGGTCGAG
ACCTTTACAACCTGCGCACATGAGAAAGTGACACAAGGTGAGGCCAAAAGAACGGTGCAA
GATTTCGGTTGAAAATCCAGGTCATCTTCCGCCGCACCCGGGTACTCTGGATTAAGCCAT
CTCGACGGCGACGACCGACGAACAGGAAACACAAGTGAAAGGCGTTGGCTCACCGGAATA
AACAGAGCGCAATGGCTGCGCAGCCGTCATCACTGTTCACACTGCAGAAACATTCATCTC
GCAAAAACATAAACAGAAGGAAATTCCAAAGCAAATCTTTCCTGGTCCATACGTACATGC
ACGTCCTAATCCTAATCAAACATCACCAACACGTTCCCGGTGAAATGCAACGCAACACCA
GGTGTGAGGATAATGCTTGACTGGCCGGACAGTAGAGAAACTTCAGACAAACAAACAAGC
AAGCTGGCCGGTCCTGGTCAACAATTGCAGCGGCGAGATCAACATTCCACGGAAAGGAAT
TCAACATCTCTTAACCGGCTGCTGTTGTTCCACGACTAGCAGCCGACAGAACTTAGCATT
CAAGAGAAGAAATGCTACCAGCTGAAATGTTTGACGGCGAGCAAATACGACCGACCAACC
CACGTTTATTGCATAATAATGGGGTTACAAGCCCCACTCTAACACACACTGCTTCCATGA
CCCCCATCCAATCAGAGAACGACAAGTATCTACAAAGCTGGTTCTACTATCTACACTTCA
CTCTGCCCTTTTTTCAGATGTCTTTCCAACATATACATATCACATAGCACTGAGACCACT
CGCTAGGCTAACCAAAACAACAAATAAATCCAAGGCAAAGAGAAGAAATCCGACCATGTA
TGGACAATCAAAAACCCTCGACGCCAGGTCTCCGCAGGATACCGGAAGGCGACTTCTTGA
CCGAGCTTACCCTGGGGTAATCCAGGGTGATGATGGAAGAGCAGGTCCTTGGGGGAAGAA
GCGCGGAAGTCGATGATCTTGGCGACGCCAGGTGCTGGTTGCGCGAAGGAGGCGACGGCG
AGAAGGTCATGACGGGATGCTGAGGAACAATGCCATTGAGGCTCGTAGACTTTAGCATCA
CTTTCCTCGGTGCGGCGGACGGTACTTGAAGAGGATACCGGCAGGGGACCTTTATGTCCT
GAACGCTTGTTAGGGCCTCCACGACGGCCCTCATCGTAGGCCTTTCTGATGGATCTCTTT
GAAGGCACTTCAGAATTATGTCTGCCACAGTTCGAGCAGCCTTGGTAGGAAAGCGTCCTT
TTATACGGGGATCCATGATGAGGGATAGACGACTATCGTCGGTGAGGAAAGGCCTACCCC
ACTTGACAATATTACGTTCTTCTTTGGTGGAACGTACATCGAGGTTCTTCCGTCCTGTTA
TTAGCTCGAGCAAGACAACTCCAAAGCTCCATACGTTGCTCTTCGGAGTCAGTACGCCTT
TCTCCAAGGTTTCCTCTGAGAGGTTTGCAGCCTGTCCAGGAATAACATATCCCGTAAGCA
TTGGGATGTTGACAAGTAAATGGATATAACGCAATGTATTAATATTATTTTCAATCTTTT
ATCGCATTAAAAGCATGCAAGCCAGAACCAATCTAAACTGTAGAATTCTAAAATGTGAAG
GAACATGCTGTGTGAACCTATAACCTATAAGGCAGTTTGTGATTCCACGACAAAGAACTT
CTACCATGTTTTCAAATTTCAAAAGGAACTTACCACAGATGCCTTGGATCTTTCCTCGTC
AGAATTGAAGCCAACACAACCATATCCCGACAGCTTTGCAGTGAAATCTTTCTCTATTTG
GATGTTTGACGTTGAGAAGTCATCATACATTGCCTGTAAATAGAAATGCATGTTAAAATA
TGTAAGAAATAACTATCAAACAAAGTGCAACAGAACATGGTAACTTCACACCATAACTTC
TTGGTCGTGTCAAAGGGTTTGGATCAAGTTACCTGAAAGGGTCCTTCATCGTGTAGGAAA
GCTAGACCTTTAGCAGCACCAAGGGCAACCTTCAAACGTGTAGACCAGTCCATGAAACGA
CCTTCCGGTCTTCCAAAGAGTAACCTGTCTAAACTGCCATGATGGAGCCGCTCATAGACC
AACATCCTTTCATTAGATTCTTCTCTTGCGTGATAGCCGATGAGTTTACATAAATTGGGA
TGTTGAAGTGATGCCAACGTATTTACTTGTGCCTTAAATTCTTTGAAACTCTGCAGAGTG
GTGAAAAATATATTGCATCAGTGCCTCATTAGTCAAATTTCAAATATTACAACAGGATGG
TCCAAGAAACATAGTAGCCATGGCACGTACGTGGCAATTTCTCTAAAATGGTGAAAGGTG
TCCAGTTATCTAGAAGGTCTAACCGACAATCTCAGAGTACTAATTTTTTTGGAGATTCCT
TAAATGTTGACATCCAGTAAAGCTGGACCGGACATTACCAAGGATCATTAGGCAAAGGCA
TACCTTGGAGAAAGTAAATCTCCACTAAATCGCTTGCAAGAGAAAGCATGAAACACCACC
TCCCAAAAGAACATTGCTAGTGAATGAACAGCTCACAAGTGATAAAGCCAAGATTGATCA
TGAAGGGTTACAAATATCTCATAGTGAAGAGAACAAGGACGATCAAACACATTGTCTGCC
TTCAAAGCGTGCTACCTAACCCACCGATGTTATGCTCCTAAGTTGTATTTACAAAATTAA
AATCAGCCTTTTTCTACAGGGGGCAGAGTTGCATCAATAAGCATAGGTCACATGCCTAGA
TGTAAACAGCAGGCAACGCTAGCCTAAGTTCAGCTTTGTAAACAGAACAGATACTGCAAA
CGTGATACATCCATATTGGATAGGCAAATTTCTCCAAGTCATCACATGGAAAGAAGAAAA
ATAGTAGGCATGCCAGAAAGTGAGTTGGCGAACAGGCCAGACTAGCAAAACTATGAGGGA
AATCTCCATGGCTCATAATTGATCTAGCAAAGCTATTTGCAACCCCTGACCTTAACATCC
AAAATAAGAAGGGAAAGTATAACCATGAAACTTGATAGAGAACAGTACCTGATTGGAAGG
GAGTAACCTGGCTACTATTGCTTCCATCTTCTTTGGTTCAACGAAATCATCCCTGAACAA
TGCCTTGTATGATGTCGAAGTCAGAGTTTCTGAGACACGATGATCGCCAGAAAACCACTG
GCAAGCAGTGGAAATCTCATCGTACGAGAAGTTCTTAAGCCCCTCGGACCTCTTTGGAGG
CAGTGGGAGAGGACCTGAAACTTCAAGTGGCCCACTTGCATTGATAGCCTTGAAGCTACC
AAAGTTCCTCAAAGAACTGCCTTCTGGTGAGGGAAGAGGAAGCGGCAGCGGATTTGAAAA
ACGATGCGCCTTAATAGCTCCTCCCTTGCCCCTAGAGTCATCCTGATCATCGAACTCAGC
ATATGGAAGGCCATCCTGATCAACCAGAATCAGGCTCGAGGGAGCAGACAGCACACGTGC
CCTGCTGTAAGAGACTTTATTGGCCGATTGGCAGATCTTTGCCCTGTCCCTGAAACTAGG
AGGCGCTGACTGCAAAGATGGCACATGAGCTTCGGGCTCTGGAAGTCTAAGGGATGTATC
CCTTGCATCGCCCTGCTTCTTGCTTGCAACAAGAGGGCTCTTCTTCTTCTTGGACCTCAG
GCCAGTGAAGCAGCCCATCATATGCACACCGAGGAAAAGATGCTGCAGAATTTGAAATAG
ATTGATGAATTAGCTTTTATATAGCAAAAGTAACTGGTCCTGCATTGCATTACAGCGGTT
AGCAGTTGGCAACACACACACACACAGAAAAGTTGTGGTGTACCGCAACTGTGTTGCTTA
AAGATAAATCCAGTACGCCTAGGCTGCAAAAAGGCACCAAGCAAGAGCTTGCACGAGCAG
CCAACTTAGCTATGGTTTCTTTTCGTCAAGTACTGTACAACAAGTAGATCATGTTACTTC
TACCGTCCCAAGAACTGATCTACCCAGGCACCAGCCAGGACCAGAGAGAGATACTACGTG
GCCTGGCTGGTTCGACGCATTGGTCCATAGACGCCACATTCAATTTCCAAACACCGTCCA
TTATTAATTTCGTCCCCGATGCAGGTTTCGCAGAAATTGCGCATGCCCACAGCAGCAGCA
GCAGCAGCTACTGCCACCAGGCACCAACTCGAAAGGAACGGAGTTGAATGGTCAGAGCTC
TCACCTAATCTGGCCAAATAACAAACTGGGTCAAGAGACCGGCTAAAATAAGCAACCACG
CTCAGCTAGGTAATTGACCCCACCAAACCCAGCCAAGAACCAGCCGCCCCGGATTAACCG
GGACATTTGACCAGCACGCGGTCGTAATGGCTAATGAGCCGCAGCTCATGGCCGGCGGGC
TGAAAATCGCCAAGGGGGTGTCACCGGGACGCTCAAAGGCGTCGCATTTCTCGCTCTGAA
ATCAGCATGCACGCCGAATCCCGAGCCTCCGTCCCCCGGAATCTACAATGCGAGGGGCGC
GGGCGAGGAAACGGTCAAACGTGCTAGCGGCGCCTTTGAGCCGGCCCAATGGGGAGAGAT
CCAGGGGCATGGCCGACGACAAGGGGCCGAAGAGCAGCCGCAGCGAACGGAGCGAAGATG
GAGATGAGGAACCAAGATCGTACCTGGACCGAACGCTCCGCGGCGGGACCTGACTGGGCC
GTTCCGGCGCCTGCGAGTGGGAGGGGGCTCGCCCGCTCGTCCCTCGGGCGTCTGGGAAGG
GAGGGGAGGGGAGGGAGGACGGCGGGGTGCAGACGAGGAGAGCGAATGGTGGGGCGAGGA
AGGATATAGCAGGAGGAGCTGCCGAGAGGGGGGGGAGAAAAGTAAAGAATGGAGGTGAGA
GAGGAGGGATGGAGTAAGAAGAAGCGGCAGCAGGGTCGGGTGGGCACTGGTCAAAGCCGG
AGATGTGGCGATAGCAACCCCGAGGCGAGGCGGCTTTCTGTATTCCACCCTGTGAGCGCC
GCATTTTCCAAACCGCCCCCCTTGATTCTCGGCCGCAGAAATGTGTTTGGGGGTGTTTTT
CCTGCTTGATGGACCCTTGTTTTGTATTTTACCCCTCGGTGGTATTACTCGCAGTTTTGG
AGCTGGTGAAAGCGTGAAAAATAGGTTAGCCACCCAAAAGCGTTTTGAATCCCGGAGTCC
ATGGGAGCCAGTATTTGGAATTACAGCCTCAAAAAATGGTTTCTTTCGCAAATACATGCG
TATGTAAACTATTTCCTCCGTTTTTAAATATAAATTATTTTAAAAGTTTTCATAAAAGGA
TTATATATGTATGTACATAGACATACTTTAGAACGTAGATTTATTTATTTTGTTTTTTTG
TAGTCCCCTAGTAAAATATTTAAAAAAGACTTATATATAGGAATGGAGGAAGTATGTATG
TATAAATTATCATTACAGATGCAAGAAAAGGTAAATATGTGCCTAAACTTTTATTGATTC
ATAATTTATGTTCCTTCGGTTCTTACCTTCCTAAGATTATGTGTAGGTTACTGATGCATG
TTAAACACCTGTCAAAAACCAAAACCAAAATGAAAAAATATCTTGAATTGAAAAGGTTCT
AATGGAAACGGGACATGTTTTCATGCAGAACAGCTCACCGAAACAAAGAACGGAAACAAA
AATTAAGTGAATGAAAGAACCACTCTAGGGAAATCGAAACATGTCTTCATGTTGAACACA
CGGCAGAAACAGAAATGGAAACGAGAAATTCGTTAATGGATACAACAATCTGGTGGAAAC
AAAACGTGTTTTTGTGTTGAACGCACGGCGAAGACAGAAATGGGAACGAGAAATTTGTGA
ATGGATAAAACACTCTAATGGGGAACAGAACATGTTTTCATTTTGAACACCCATCGGAAA
CAGAGACGAGAAATTCTTTAATGGAAAAGACATTATAGTGAAAACGAAACATGTTTTTAT
GTTGAACACTCGACGAAAATTGAAACGGAACCAAAAATGTGTGAGCTGTAAGATATCCTA
GTGAAAGCAAAACATGGCTTAGTACTGAAAATATGGTAGATACAGAAACAGTAATAAACC
TTCGTGAATGGGTAAAACGCTCAAGTGAAAACGATACGAGTCGTGGTTTTGTCACGGATG
TGCTCGTGAAAAGACTTACGTGTGAGGCCATCTCACCTAAGTGGCGGCTTGAACGGGGTT
GATCGAAATCGAGAGATGCGGGTTTACCCAAGTTCTACCCCTTCAATGGAGGTAAAAGCT
CACGTCCTGTATTCGATGTTTATTGATGATGCTCTCGATTACAAGGGTGCACAATTGCTA
TGTAGCTCTCAAGGGTTTCTAACTTATCCTTTCTACCTCACGTGCTCCCCTTTATATATA
TATATAGTTGGAGGCCCTGAGATTACAACAGTGTCCAGGTCGTATTACAACTCATGACTT
ATTCCTCCTACTCACTTGGGTGAGGGAGAATCTTCATGTCTTTCCTCATGAGTCGTCCCG
CCACGTGATGGACCATGAGCCGGCCTCTTCGTCTAAGCCGCCTCCTGGTCCTTCGTGTTT
AAGGGCCTTCAGCCCAAGTTATAACCGAGGCGGGTTACCTGTTGGGCGGGTCAACCCATG
GGGTATATCCACAACATTATCCCCTAGTTTAATTTGGATTTATCCATGTTAAACTTCGTC
CTAAAAAAGAAAGAACCTCAAAGGCGAAGGTTTAAGTCATCTTCAATTTTGAGTCGGTAA
TCTTCTTCTTGAGAAAAACTTCGCCTGGGTCAACATTTTGCCGGGTTATCTGCCTTGTTT
AGGGCTTTGTATTTTATCACCGTTGTTATCATGACATCATCCCGCGAATCACTCACGCCA
TCAAGTCATCATGGCGAATCTTTTCAAGTAGTGCCCAAATCCCCATCAGGCGGGGAAATC
GAGGCGTCTTGTTAGCTGCAAATTATTGCGTGTGTTCTATTTTTTACTGCACCGCTTCGC
GTCTCGTCTTATTATAAATGGACTCTCTAGCCTCTAGTTTAACCTTTTCATCTCCTCTTC
TTCCTCTCGCCTCCAGTGCTTCTCTCGAGCTTCGCCGGCGCCGCCCTTCCACCGGTGATT
CCGCCCTTGCGCAGTTGCCATCGGAGTTCATCTTCATCACAACACAATATTCCCAGAAAG
TGGTCGTCATCAACTCTCCTCTGCTCCAAGCTCTGTGAGCCCCATTAGTGCCCTAGGTCA
TCACTAGTTGTCCATAGTTCATCGTCATTTCATCACATGCTCCATAGGTCATAGTTATAG
ATCTATAACCACTTCTCACCCATCGTATGGTGTAATTTCACCACCGTCGTCGCCTCGCAA
CTTTTGTAGATCCATAGCAGATTTATCTTCAATCCTTGTAGATGCTCTGTTTTGGTAGCT
CTGCTATCAAGAGCATATTTTTCTTCCTTTTTGTGTATTATTTAGATCCATTTGTTCTGC
CACTTCGATAGGAAGTTGTTTGTTGCTTCAAAAATTTGCGCTAAGTCCCCTGGATCTCAA
GTTTTCACCCATTAACCGGCTCTAGCTGATAGCTTGTGAGATGACCGGCTCAATATATTT
CACCCTTTTGACCGGCTTGTCTTGTGAGTTTTTTTTTTACCGGCTACTGTAGGG