morexGenes - Barley RNA-seq Database

Contig contig_47525
Source Contig contig_47525
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47525 (7163 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_47525

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63371	4	3134 bp	MLOC_63371.2	Available	Available	LOC_Os11g06190.1, FRAME:+1, EVALUE:2e-59, 13111.m00616 protein expressed protein
CDS Structure of MLOC_63371

Contig Sequence (7163 bp)

>contig_47525 7163 assembly3_WGSMorex_rbca.fasta
AAAAAAAAAAAAAAAAAAACAGCTTCACCTGTCAGCCAAAAGGGAGAAGAACAACAATTT
GTCCATTATTAATTAATGAAACAATAGTACAAAAGTCCCAGCACAGCCGCTGGAAACAAC
AACTTTGTCAGTCAGGCCTTAGTAGTACAAGATTAATTAGCTGATAATGCAAGTCTTCAT
CATACAGTTCATCAACACATGACCTGGAGCATGAGTTTTGTCCATATGACGTCTGTGCAC
TTCAGTTCCCACTCCCATCTACCATCATCACCATCCTTGGGCCTTGCACACCCATCTCAC
CAAAACCTTTTTGGTTGAGGAGTCACCAGATTCACCATAAATATAGACAGACGATCGCCG
CCGCGCCACAACAGAGGGCGAAACAGGCCTCTAGGAGACTAGGACAGAGACGTTTCGCCG
ATACAGCGCCAAAGGGCACGGCCACTTCACTTCCCTTTCTCCTACCACGGCAAGATGGGG
ACGGGCGTTTCAGAGGCAGCCGTCTCCTACTCTGTCGTCGTCTTCAGGACAAACCCCCAG
TTTGTTCTTCATGCGGTTCCACTTCTTCCTCAGGTCGTCTGGGCAGCGTGTGGGGTGGAT
CGACTCCCTGCAGTACTCGTGTATACGCACCCACGAGATCGACCTCTTCTCCTTCACCGC
CTCCCCCTTTGGGGCCAACTTCGCCATTGCCTCCTGAAACCACACATGCAAGTGGACAGT
TAGCGACACATGCAAGTGTGTGAGTACGCGTCACAGCTTACCCAGCTCAATTATGAGATG
GTTCAGAGTTAGCAATGAAATTTCACGGTAGCCTCCCTGGGCCATCGAATCTACCACTGT
GTATGCATGCTTACCCTCAAAGCCACCTCCTCTGCCTCGCTCCAGAAGATCATCTTGCGC
CTTGCAGTTGTCGATGTAAAAGGCGTTTTACCTGTAAAAGGCGTTTTGGTTGGCGCCAGG
GGACTCCTCATAGCTGGTGTGTGGGGACTATAGCTGCAAGGCATATTTTTTGCTTAGCTG
TTGAGACATTGAGAACAGAGCATGCATCATCACATTAGATGGAAACAAGGGTATGTATTT
TCTCAACAGATGGGGCGTCTGCATTTAGAAACACTGCCATTGTAAAGAAATCTTAATGTG
TGCTTCCTTTTTCATGTGTGTGGATTATTTTCGTACGTGAAACTGCACGGCAGAGGATAA
TAATGCACTGCATTGGCGCAGATTACTTTATGTGCCTGTGCAAAAATTGCTTAACAGTAA
CAACATGCCCATAGCTATGCCACAGGCCACAGCAGCCAGCGTCATATGCAATTAGGTACA
GCGTAGAGTACAATCCAATTTCCCCATCCTAAACATAAATTCATTCGGACTAACCATGAG
CACGAAAACTACTGCGAATTCAAAATTATCCATCATTGAAGAGACCCATTTTCCCTCATA
CCAGTATCTGGCATGGAGTAACCCCTCCCTCAAGAGATTTATACTCTTCTCAGGTTTAGA
CCATCTCAAAGCTAAATGCATTATGCTATAATGGTACTGAACTAACAACCTTAAATAATT
CAATTAAGCAAGAGAACTGTGACTTTGTATGTTCCAACCTACAAACATCCATGGCACAGC
TTTATTTAATTGCAAGTATAAATCAGGGGGGTTCGTGTAATTTGAATATAAATTAACCAC
AGGTTACAGGCATACTTAATAATTCAGAGAGTGCAACCAAGAAAAGAAGTACAGAAAACT
TACTAATGCTCGGGTGGGTACGGATAGTATCTTTTCCTTGCTGGTGAATGCACGAACTGA
TCCTGGTACCTCAATGTTTTCCAAGTACTATTTGGTGCCACTGTCCCCATTTCTTGAAAG
CTTACTTTGCGGCGACTCATGTTTCGCGAAGACATAGCTCCCGGTCTATCAGAAAAATTG
CAGTTGGGAGAATTCATAAGACAATTCTCTTTGCCAACCCCGATGTTGTGATTTGCAACA
GAACTGAATTTATCCCGAGCTGAATATGGCACTTGACGAGACGAATTGCTATTGCCATCT
CCATGGGATTTTGCATTTTCAGAACTCGGAGAAACGGTTGTCTTTGTGGTGACTACCTTA
TCAGGACAAGCATCACTTGTACCATTTTCTTTAAGATGATTAGGCTCTTCATCCTTGCAA
GACAGCTTAGCTGCTTCAGACTGATGGTTACCTTGCTTTTTAGCTGTGTTAAAGCCATTC
ATCTGATCCTCGAAGTTAGCAGCTCTTTGCTGAGTTCCAATAGATTGCTCACTGAATTCC
TTTGTAAATTGCTTCCAGCCGCTGCAGAAAACAGATAAATTTTTCCTAGCTTCAGAATAT
GTTTTCTTAGCCTTTTCCAATGCTTCAGCGGCTTTACGGCAATAGCAAACAGGGCAATCA
AAATGGCCAGAGTCATCGAATGTCACCGATGAACCGAAACAGCTAGCATGGGCAGCTAAG
AAGCAGCTGGAACATTTCAGCAGCTGTCCATCTTTACTGCATTTCACACATGAGTCCTGT
TCCGTCAAGCTTTCTGAACTTTCCAAGGGAGTGCTGCCGCAAAGAGATTCTAGCCCGCCA
TAGATTCTATTCTTTATCTTACTGTCATCAGGTGGCTCTTGATCAACTTTGTCAGCACAA
CTGACTGCCAGCTGAACCTCTCCGCCATTCTGAACATCCAAACCTTGAGCTGTGCAATTA
CCTGCAAACTCATTTATTTAGTGATGATGGAACAAAAATATAAGCATGTGATTTATCAGA
ACATACAAGGTATTTAATTTACCTATCAAAGACTTGATGGGTGTCTCAAAGCCAGTCACT
GGTGACTTCTGGTTCTGCCATTTGCTAGTCTGTGCATCAACGAGCTCTGAATGTGCCTCC
TTCGGCTCAAACTCCTCAAGATTCTTCATGCTGTTAGGAGATGGTTCTAACGGGCCTAAA
AAAGGTATGTCACATTCTGTCAGCACTTTTCATGAAGATATGTTTTCTTAAAGAAGCTTT
CATTCTTTCTTGAAAATATACGTATGTTTAATAATAAGATATTCAACTAATTCGGAAACC
TATATGTTACAGTTTGTTTGTAGAAGCTAGTTTTGAAAGCATGTAATCCAAGTTTCCCTA
AGCTCAAGAACTCTGTATATCTGCCGTGAAAAATATAGTATACTATCTTTCTATACATTT
TGTTCTAAATATTCACATAAAAGTAATGGCCAAAATTGCACACAGAAGTTTGTGCCCATA
CTACAAACATATATTTGTCGATAGGTAATCAAAACATATTTGATTCAAATCATGTAAAGT
GAGGTATTAAAGAGAGAAATATTCTCATAAATGTACCAAAAACAGCAGACAAGGTTAAAA
AGTAAACGAAATGGCGCACTTATAATAATTGCAATTATCTCAACCGAAGTTGCCTTTAGA
AAATTTGATGGTACTACTAATATCCTATATGAAACACTTTTTTTGCAGGAAAATATATGT
GAGCCACTGCGAGTTGTACTTAGTGATGGAACAAAAAATACAAGCAGTTGATCTACCGCA
AAACATAATGTACTTACCATTCTGGGAACTAAAAGGCGTCTCAAAGCCCAGTGGTGACAT
TTGGCTCTGGTATCTGTCAAGAGCAGCACGCCAAACCTCTTCCCATGCATGTTTCTGACC
CTCCACTGTACGTCATCACAAACATTAAAGGTAGAAGATAAACACAGAGCAAATCAACGG
ATCTACATTGACGTGTATTTGGCTATTTGCACATACCAGGTTGTCCAAAGGCCAGAACCA
TGGCAGCCTTTGATGGTGGTTTTCCCTGTCTAAAAAGAAAAAGGAAATTACATGAAGAAA
CTCAAATAACTGTTGAGACTTAGAAGTAATAACTCACTTAAGATCTGCAGTGATTAATAT
ATGTGCATATAACTGTGCATGCTGTTCATCGGTGAATGCTTCATGTGCCAACGCTTCACA
GGTGTTCTTAAGCGAACTTCCAGGTGTCCTCACGCCCTAACAATCACGATAAACTATGTT
AATATATTCCAACTAACCAAAAGGACTGAGATGTATAAAAAAAAATCTGAAAAAAAAAAC
AGCTCTTCAGCAGGGAAGGAGACAGACCATGCAGGAGTGAAGACGTGCATGAGCAAGCAC
ACCTGCAGGGCGTGCACACACAGATGGAAAGGGGGGGGGGGGGGGGGTTACCATGGTATC
TGGAACAGCTTGAGATCCAGCATAAGGTTTCCATTCAGGAGTCTGAATCTCCTCTGGTGA
ATTTGGCAGTGCTCCCTCTGCAAACAAAAGGTTCTCTGTATTATATCGGCTTGACTGATT
TTGAGCAAAGTAAGCGGACAAGATTCAATTTTGCGATCTAGCCGATGCAAGGCAGGAATC
CAACATCACTGGCCCAAATTTTGGCAGGCTATGAGAACCCCTATTTTGCACCCAAAGTAT
ATACAAATTTGAAAGAAAAAAGAGGGGCGGCAAAGGTGACTTGAGCAGGCGAGCAAGCAC
AGAAAAATCAACAACTCGCTACACAAGCTATCGATTGAGGGTCTCGAACAGAAATTAAAA
AGCAGAAGCCAGGAGGCTGGCGTCTCCGTACCTAGACGAGGAGGGTTGCGCACAGGGCGT
AGGGCACACTTTGCTGGTGGCTTTCCCTGGCTACAAAGAAGATAAAATCAAATTGGAGAA
ACTCACATACCTGTTGAGACTGAGTAATAATAACTCACCTAAGAGGAGGGTTGCGCACGG
GGCGTAGGGCAGACTTTGCTGGTGGTTTTCCCTGGCTACAAAGAACATAAAATTAAATTG
GAGAAACTCACATAACTGTTGAGACTGAGTAATAATAACTCACCTAAGATCCCCATTGAC
TAGTATCTGTGCATCCAACAGTGCATTATGTTCGTCGGTGAATGCTTTGTGCGCCAAAGC
TTCACGGGCGCTCTTAACCCAACTTACAGGTGTCCTCACGTCCTGCCAATTATGATAAAC
ATGTCAATATATTACAACTATCTAAAACAATTATGAAAAACCATGCCACTATTAAAACTA
CATTCTAAAATATAATCAGTTCTTCGGTACAGAGGGAGCGAGAGAGACCATGTGGGAGGG
AAGTGAAGCATGAGTATACACAGCTGAATGCACATGATTTGTGCCCGCATACAGAGAGAT
GGGAAGATGGGGGAGGGGTTTACCACAGTTCTTGGAGGAGCTTGAGATCTGGCATGAGGT
TTCCACTCCGGATTCTGAATCTCCTCTGATGAATTTGGCAGTGCTCCCTCTGCAAACAAA
AGGTTATTTGTATTATATATCGACTTGACTGGTTTCGAGCAAGGTAGGTGGCCAAGATTC
AATTTCGCAATCTAGCAAATGCAAGGCATGGAATCCAACCTCAGGTAAGTACTAACATCA
GTAGCCCAAATTTTGGCAGGCTATAAAAAGTTAAAAAACCCTAATTTGCCTTCAAAGTAT
ATATGAATTTGAAAAGAAAAATGATGGTGGGGAAAGGGCAACTTAAGCAGGCGAGCAAGC
ACAGAAACATCACCAACTCACTGCACACGCTATCGATTGAGGGGCTGAGGCATAAATTAA
AAAGCAGAAGCCAAGCGGCTGGCGTCGCTGTACCTAGAGGAGGAGGGTCGCGCTTGGGGA
GCATGGTGGCCTTTGCTGGTGGTTTTCTCTGGCTACAAAAGAAGATAAAAATTACATTTC
AGAAACTCACATCACTGTTGAGACTTACAAGTAGTAATAGCTCACCTAAGATCTGCATTG
ACTGGTATCTGTGCATCCAACTGTGCATGTATGCTCTTAACCAAACTTATAGGTGTGCTG
ACGCCCTAACAATTATGATAAACCATGTCAATACATTTCAACCAACCAAAACAATTATGA
CGAACCGTGACAGTATGAAAAATGGAAACAGCTCCTGGGCAGCAGGGAGGGAGCCGGACC
ATGTGGGAGGGAAGATGCATGAGCAGAGCACACACACACACACACACACACACACACAGC
TGAATACGCAGAGAGATGGAGAGAGGGAAGAGGGGTTCACCTCGGTTTTTGGAACAGCTT
GAGATCCGGCAAGAGGCTTCAACTCAGGCGCCTGAATTTTCCCCTCTGACGAATTCTGCA
GCGCCCCCTCTTCTGCAGACAAAAGGCTCTCTGAATTATCCCCACCACTCGACTCATTTC
AAGAAATCAACTCGCTCTCTGGCTAGCGCAGGGCAGGAATCCGGACACAGGCAACAAGCA
ACACGAACAGCGGGCCAAGATTTGGTAGGTAAAAACCAAGAAAAGACCCATCTTGCGCCC
CGGAGTGGTACGGGGGGATTTGAAAGAAAAAAAGAGGGGGGGGAAGAGACCGACTTGCGC
AGCGGGCGGCCGTCGCCGGGCTAGGCGACTCGACCGAGGGGGCTCGAGCTCCGGAGAGAA
CGGACGGGGAGCGGCGGCGGCCGTACCTTGAGGGGGAGGGTTGCGGAACGGCGTAAACCC
TAGCTCGCGCGGGGTGACGGGGAGCCGGCGCGCGAGATCCGGCCGGGCGGGGCCGGTGCG
CGGCGTCGCGGCGGTGGCCGGCGTCGATTCTCCCGGGTCGACGGCTGCCGCTGGGGCCAT
CGGATGAGGCGGAGGGTGGGGGAGAGAGAGTGGGTTTTGAATTTGGTGGCGGAATTCCAA
CGAATACGACGGCCGCCGTTTTTTCGCTTCCGGAAATAGAGATTAGACGAAGACGACAGT
GGGAGGGAAAAGGGCCTGGGCTGGCCTGTACATGGGCCTGGGCCGAATCTGTTAGATCAC
CGCTGGCGGCTGTCATTGGGCCTGATTGCCGAGTTGAGGGTTTCTCGTGCCCCCGCTGCC
CTCATCTATGAATAAATATTAAAAATATATGAACAAACTAGACGATGCCTCGAAACTTAT
TTCAAAATATATGAATATATATTAAAAAACTAATGTTAATGCGAAAAATGTCTTGCTTAA
TTACCTAGAGATTCATGCATGAGGGTATGTTTTGCATTAAGAGATTAATGAAAAAAATAA
CTTATGACTACATGCATGAATTGATGATGTGACATTATTACATGAAGAAGAAAAATTAAT
ACTCCCTCCGTCACGGTTTTGAAGACACAGTTAGACTTGCGTGCGTTTCCAAAATAGACA
AAGATTAAGGCACGTTGCATTTA