Contig Data
morexGenes
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Map Locations of contig_47487 (8952 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_47487

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63319 2 1627 bp MLOC_63319.1 Available Available LOC_Os03g09840.2, FRAME:+1, EVALUE:6e-172, 13103.m01092 protein C2 domain containing protein, putative, expressed
MLOC_63320 2 1380 bp AK370266 Available Available None





CDS Structure of MLOC_63319






CDS Structure of MLOC_63320






Contig Sequence (8952 bp)

>contig_47487 8952 assembly3_WGSMorex_rbca.fasta
CCGCCAGCGTCGAAGGAGACGGCGAGCGGGCGCCGTTAACGACCGTCAGCGCTGGGCCGG
CAACGCTGGCCAGCGTGGCACCTGACATGTGGGCCACTTTTGCCAGAAAAACGGTTAAAA
GAGCTAAATCGGGCAGTTAAAAAAATTGATAGTTTTTTGCCACAGATTAGAAAAATTTTA
TTAGTTTTTTGTTGATAATCGTAAAGTGGTAGCCACTTGACCCATTTGTGCCAAATGTGA
TAGTTTTTGACAATTTACTCCGCTCGAAAGCAATAAGGTTCATGGGCTCGGGCTCGGTTT
AAGATGACCTCCATAAATTGTAACGATTCGGAAGAACATCGACCATCCAGTTCAATTAAA
ATCGTCATATCGACCGTTTTTATGCTCATCGACCTACTAGACTTGCTCTAATGAATTTCT
CCAGGAGACCACTTTGGACAGGATTTTCATACGTGCTGCTCCGAGAGGTCGTGCCCAAGC
CTGGTCATGATAATTATCTCAGAGTTCATTTGGCTTATCGTTATCGGGTTGGTAGGCATG
TCACATCAGCTCTCAGTGCTCCATTCAAAAACACATGGATTCCCCACTGGACGATTGTTC
CGGAGAATAAAAAAACATGCCATCGAGCTGCGTGCACTACCGTACCGTGTCATTCACTCA
TCAGGTTGAAGCACGCTTCTGTGGATGAAAGTGTTTGGTTAACTCATATAACCAACTAAA
ATAAGAACACGGATGTGTTCTGCTCCGTTGGTGAACCGGCGACTGTGACGAACTGGTTTG
TCCTTGCCGTTGGAGTGTCGCGCTCTCGGAGATTTCGCCGCAGGAGCGCCTGGGCGCCGC
GGAAGACGCCAATCCGTCGCTGACCTCGGCGGCTTCCTACGCGGCTCGGTTCGACGGATA
CGTTTGCGCAGACCTCCTGGAATGCCTTCAGAATAGCGAAATAGGCCAAGGAGGCTCCAT
TTTGTAAACATAAACCTCGTGGAAGTTTACTCTTTTACATTGCACGAGTATTAGCTTCGT
ACTCCCTTGGCTCCGGTAATAAGTGTACTTTTTTCCTTTTCTGTCACTAAAACTAATTAA
ACATTGACTGACTTTATTGAAGAAAATACTAGCATTTATGACATTAAATTAGTATCAATA
GATTTGTATTTACATGAAGTTTGTAAATGTATCATTTTCATGTCATATATGTGCTACTAT
TTTTTATAAAATTGATGAAATTTTAAAATGTTTAACCAAATACAAATTTATATGTACACT
TATTTATGGACGAAGGGTGTACGAAGTATAACTCAATCAGTTAAAGGAAAGTATTACCTT
CGTCTGGGTTTATGAGGCCCCTTGTATTTTGCGCTAGACTTTGACCACATGTATACTAAT
AAAATAAAATAAAATATGTTACAAAAAAGTACATCATTCGATTTGTATTCGAAAGAGGGG
TTTTCATGGTGTAATTATGTGATTTATAGTTTACATTTTATTAGTTAACTTCATAGACTA
AATTTTATCCGAAACTAAGCATGGGCCTAATAAACCCGGGTTGAGGAGTACCCAAGGACG
AAGATTTTTCGATAAAGATTCATCATTGATGCCTCAAGATTTATGTATTTCACTTCAGTA
AACTATAACACTGCATAGACCAAGACGCCTCACTTGCTTCCATGGATTTATCTCCTTACA
TTACAAGAGTCCCCGCGAGTGGCCAATCTAGAAAAATATGAAGGGGGGGCTGGGCTGCCT
GTTTAGGATGAACATATGTTGAGTTGTACTGACAAGTGATTGAATTAAGCCTTGGGACTG
ATAGTAAAAAAAATAGTTGTGCGGTGTTGGAGGGGGGCTCAAGCCTATTAAAGCCCCCCT
GATAGATTCGTCATTGGTCCCCGCAGTTGATGAGTTACGGCAGCCCTGGATAGCGTGCAC
ATCAATGAAGGTCGTGCCCAGGGTGGTGCTACCGAGACATCTCGGTGATGGCAATGTCGT
ATTGCAGCGATGACAACACGACGGTCGCTTTTTGTGTGAACGGCAGTAACGATAATTACG
ACCAAGGCTTTCCATTCCGTGATTTGTGGCGACTACAACACATTTTCCTGGTCCCTTTAC
GTTGGCGATTAGGAGACGACACAGTTGCATGCACAACGGGTATTTTGCTTCCAACAGCGC
AATCCAAACTGCTAACCATCTCTATGGATGTAAGATCAGTGGGTTTTAGCATTTGCATTG
GAGGTTCTCGACAACACGGTTCGGTGATTAGATATCTCCCTTTCGATGTAGAGGTTTGGA
GTGCTCGGCGCGATTCAAGATGGTGTTCGCAACAGCAGATCCGACGACTTACTTTTGCTA
GTATTTGTTTGCAACTTGGTATTTTCTACTCCTTCGACTTTATCAAAATATCACATACAA
TAAACTTACACCGTTTGACACTGTAAACACACGCATCCACCGAAGTTGGGTGAACTGTCG
GTCCGGTGTGTCCACAATGATTGGAACGACACGAACTTGGTGTGACTGATCGAGCGACGT
AGCGCGTAATGAAGGACCGTAATGAAATCGACAAGAGATAGAGTACCGCCCGTCCAAATC
AGTTCGTTCCCGACCCTGTCCAAAGCGCCAACAAACGCCAGCCAGATTGGCCGAAACAAA
GAAAAGGCGGCCCAGCAAATGTATTTTCCGAAAAGCAGGACCCCCTTTCCGCAAAAGTAG
CGCCCCTCCTTACCTTTCCCCTCCCTCCCCTGACCCCATCCTTCGCCCGGCCTCCCAGTT
CACTCCCCCCCAGACCCAGAGTCCTCCGCCTGCCCCTGCACCTCGAGCGCGACCCGCCTC
AGCTCAGATCGCCGCACCAATCCTCGGCGAAGGAGGTAATAACACCGTCCCAATCCGCGA
TTCCCAGCCTAAAACCGTTGATCTCCCTGTTGTTTGCTCGTGGTGCTTCTTTAGTGGCAG
TAGCACGCCGGCAGCGCCTGGTCGGAGGTCTGGCAGCCTGCCGGACCTCCATGTCTTGTG
ACAATAGTTCTGTCGGTTCTTGATTTGGGCATGGACCCACCTCCTGCTTGTTCGGGCGGT
AGGGTTTTTGTAGCAGGGCTGGGGTTATTGGTGCTATTTACGGCTACTGGTGCTGAGATG
CCGGCTGCTCCTTTCCCGAAATTGCGCGTGGCATTGATGTGTACGTGTGCGCCTGAATCT
CAACATTTTTGGTATGCGATGCTTAATCTGTGCGCCACTGCTCTTCTTGCTGCTGCTTTT
CCTGTGGTATTTGCCGTATGTGCTGCGTAAATCACCGTTCACACGCTGTGGTGAAGTACC
AAATTTCTGCTGGCTGTGCTTGATGGTAATAGAAATCTCATCGCTTCCTTGGGTATGTTG
CTTCAGAGAAAATCCGCAACGGCTTCCTTGGGCCACCAAAGCTTCCAATTTTGTGTCGAT
TGGAGATATCTTTGAGCCAAAAGCTCTTCAGATTGTAAGTCTGAATTCCATGACCTTCAG
CCTCCTTTAGTCAGGGTTCATTTCTACCTTGTACTGATCCTTTTGGTTTGAATTTGAAGT
AGCTCACCTTGCAATCCAATACGTATGTTTAAATATGTTTACCACCATAAGATAAACACT
CCTCCTTACTTGAAGTCCAATTGTTTTACCTAGTAATTATTACTATCACTGTCTCGTGTC
CATTCTGCTTAGCTTCAGCTGCAATTTGCTGTCTTGGTTCAGACAATATTATGTCTTACT
TCAGCACTGAAGAAAATATTTCATTGTGTGTTAATTGCAGTCTTGGAATACCTACTATGG
CAGCAACATACCCTATGCCTGATCCACCGGTGCTGCACAACAATACTATTACTCAAAGAC
TCGACAACTCTGCTACCGAGACAGCCGGCAGAGACAAGTCCATAGGCTACCTGGACATCT
TCGTCCACCAGGCGCGCGACATCCACAATGTTTGCATCTACCAGAAGCAGGACGTGTATG
CAAAGCTTAGCCTCACAAGCGACCCACAGGTGTCGTGCTCGACCAAGGTGATCAATGGGG
GTGGCCAGAACCCGGTGTTCAACGAGGGTCTACGGCTAGACGTGCGCAGCGTGGAGGCGT
CGCTAAGGTGCGAGGTGTGGATGCTGAGCAGGGTGAAGAACTACCTGGAGGACCAGCTTC
TCGGCTTCGCCCTCATTCCTCTGTCGGACATCCTGGTGGCCGATGGAAAGCTGACCCAGG
AGTTCTCCATGTCGTCCTCCGACCTGCTCCACTCGCCAGCCGGGTTTGTGCACCTGTCCT
TGTCTTACGTCGGTAGCTCCCCGGATGTCATAGAAATCTCATCGCTCAATAAGTCGGCGT
CTGCGGTGACTGACTGTGGAAATGGCAACTTGGATCCTTGTGAGATCGAAAAGATGGAGT
TCCCAGACTTGAACATGGTGAACGAGAATGAAATGATGGTCTCCAAGTATTTCGAGATGG
ACTGTGAGAGTGCGGTCAAGGCTGAGAACTGCAAGTTACCGCAGCATGATGCAACTGTGC
CTGGTCCTGAGATCTGTAAGATCAATCCCAGCGAGTATCCTGACGAAAGCCCTGTGAGTT
GTGTCTCAACCACAGAATCCTCCCCGGAGCTCTCTGGTACGCCGCAATCAGTCTCTCAGC
CGTCCGAGACCGCCGTCGGGGCGGCGTCATCCACTGAGAGCCAGAGGGAGAAGAGCCAGG
GTGTTACTACAGATGGCGAGGCCGATTCTTCTGAAGCGCCATCCAAGGATGAGGTCGCCC
AGCCTGCAGTGATCAGCATCCTCCAGCCCAGGGAATCAGTTATCCAGCAGGACATAGTTG
ACATGTACATGAAGAGCATGCAGCAGTTCACTGACTCCCTTGCGAAGATGAAGCTCCCGC
TGGATGTCAAGAACGGTAGTCCCTCTGCTGATAACATCGACTCGAGTACAACTGAGAAGC
CGTCACCATCGCCGTCGTCGAAGGGTCCTAGGGTCTTCTATGGAAGCAGAGCTTTCTTCT
AAGTTGCTGCCGCTAGCTAGGCTGGCTCATACATACTCTGTTTGCCTCACTTAGGAGTCT
AGACTCTCACTGTAAACTTGTATTGCTAATGGTGTTATGCTTAGTTAAAAAGATGGATAT
TTCATAATAATTCCAGGGCTGTAGATTCAGCTTGTGTAACATAGTATACTACTGCTACAG
CATGGAAGTAACTTCATGATACTGCTTCTACATTTGAGTTGCCTAGAGTTTTTAGTGCTA
AATGTGTGAATTTCGTTCACCTTCAGAAGGATTTACATCAGCTAACACATCAGAAATCTG
CGTGTCATTTGCACAATATTCTATTGAGTGGCACCAATTATTAAGATTGACGATGTTAGA
TTTGGTACCAACTATTTCAGGAGAAAGGTGGTAACTTGCCCACAGCATAATCGCAAAGAA
ACAGGGCAGGAAAAAAAATACTCCGTAGATGGCAAATATATGTCAGGAAGCACAGACATA
ACAAAAGTCTTGAATGGACAAGGCGGGTTCAAATGGTACAGCGATCCTCAAACCCAGTTT
CGACGAGGAAGAGAAAAGATAAACTCAAAACACATTTACGGTCCAATGAAGTGCTGATCA
ACATAGAATTACAGAAGATGTAAAAAGTTTACAAGATTCAAACCTCCCTTGAGGGGACAA
TTCAGTGATTTCAGGGATCTAAAATCAACAATTCAAAAAACGGACCAACTTAAAAATCAT
CGTCATCCTCCTCAGCCATGTGCTTTGCCAGCTCTTCCTCCTGCTGGAGCCTTTCTCGGC
GCTTCTCAGCGCTCTCCTTCTCCTTGTGAGAATTCGGGGGAAACCTCATGGCCTTGACCG
CTTCATTATGCATGTTGAGGCAGAACGCAATCCTGGAGTTGAATGCAGCCTGGGGTTCAT
TTGTCGAGTAGACATCACCAGTTTCTTTCGACACCATCCAGCCATTTGCATGGTCTATGG
TGGCATCAATAGCACCATCTCTTATGGCCTTGGCTACAATGCACTCCGCATCGGCAACAG
GATTCCCAGTGTCTAGCCTTAGCTTCTTCGCAATATCAGCAAGGGAGATCCGCGAGTATG
AAATGCTGATGTTGCGTAGTCCAGTTCGAATGACATTGTGGCGGAGCCTCACAATCAAAT
TGTGAGTCCTGTCTGCACTGAATGTGCTTGCAAATTTGTCTGCAACAGCTCTAAACAGTT
CCAAATCGCCAATCCTGACAGCCTAGAGACCAATAATTCAAATGTTAGCTAGAGCTTTCC
AGACAGAAACACGAGGTTTGAAAGAGGACTGAAACTTACATTTGTAAGCTCAAAATATGG
TGTCAGAGCTTCCTTCATTCCTTTCTGCATGAAAACAGTCCTCTCTGGGATCTCCCCAAG
AAGCAGCCTTACTATGATAGCCCATTTATTGCACTGAATCCTAAAGCCACGAGCTGCAGC
CGGTGCCTTCCTAGCAGCTTGCAGGAGGCTTTCTTTAGCATCAGTGTACTCCAACTGAAT
TGTTCTGATTTTCCCCAAGTAGAAGAGGTACCGGCAGAACTGTATTAAAAAATGTGAACA
GTTGCTTGAGTGTATCAAAAGAATCAGTTAGGCTGCAGGAAGATTTCACACATCAATCAT
CCCAAAGCAACATTAAACTGGAAGGCATTTAAGAAAGAATAGCTAACTAATAGAGTAGTT
TCATAAAATTTAAATGTACTGGCGTAATGCATCTGAAACATGATACAATCAATGAAGTGC
AGATAATGATTGGAAGAGGCAGATGAATTACTTGCTGGTTGGAATGGGCTTCAAAACGTG
GTGCCTTCGACCTAAGTTTCTCTGCCTGGTCATACAAGTTATAGTGGAGGTAATTGCGGA
GAAGCAGATTGAGCAGGGTTTCCTGTTATCATGAAGAAAAAATGCATTTCCATGTATTAG
CACAATTTGACAGCATATCACTTAATCAGCGAGAACCAGGAAAACAGAACTACCTGACCA
AGCTCATCGTGATGTAAAGTTGCCATTCTATGTAACCCAAGGAGATTACTGTACAGAGAA
GCAAATATGAGCGATAGAATACAAAACAGGGTAAATGGAAACTAAGGAAATACTAGAGTA
GGGGATTATGTAAAAGTTGACATACCCACGAATTTCAGCAAGGGTGTTGGTAAGTTCATA
CACATACGAATAATAGAAGTACAGCCTAGAAGCCAAAACATCAACAGTTCTCCTGTTCAA
GTTCTTCAGACGGGCAATGCTTCCAGTTGCGCATGATTTAGCCTAGAGACAATTGAAGAG
CATTAACTTAATAATATGTTGCATATGCTGCACAAGATATATCACTATATTAGACATACC
TCATCGTATTTCTTCTGATCAATGAGGAAAATCAGGACAAGCAAAGAACAATATATTTCA
ATCTCAGGAAGGCCATGCTTGATAGAAATCTGAGTTGGTGGAGCTGCTGCATCAACATCC
ATCTCAGCTTCATCTTCCTAAGAAGTAACAATAGATGCATACCAGGATTAATGAGTTTTT
AATAACAGAATATTTTTTTTAAAAGCAAATCTAATTGACCGGACTTCAAGACCATCTTCG
GCTCCTCACATAGAAAGGTTGATTAACGAAGTATGTAACAAGCTTCCTGACATTCTAAAA
AAACTGAAGTTATCTCGTAAATGGCAAGTGGTGATCAGCCTGGTAATCAGTTTAGTGGGT
ATCATCATAACGGGCACATTGATTTTGAAAAATACACCCTACTGCTACAACTCCAGTAAA
ATATTTCCCCATGTATCTAAACATACGGCAAGCTCCCACATGCAGAAGGAGAATAAATAA
AGTTGCAAAAGAATGACGCAACTATAATTTAATCACACGATGAAAAAAGAATTACTAACT
GAAGGCAAATAAATAACAGTTTTGCTAAAGCACATCTAGATGTGCCATAAGTATTGCACG
TCTAATTCCTATATCATTGATCTTATGTGAAGATTCATATGAGTATTTTCTTTTTCTTTT
TCCTTTTATGCTTGATACAGTCACTTAGATGTGCAATAACTAGGGCACATCTAGATTTAG
ACAGACCCAATAAATAAATAATCAGAATCACACGATTATTAAGAAGACAACCAGTAAGAA
GCTGTAAAACAGTTAATTATGCAGTGTGCAGATGATGATCACGCATTCAACGGAGCCGCT
TATTTGTCAGGTAGCTGTTGGATTGAAATCCAACAGCTGTGGTTCTTCTTCCACCTCTGG
CACATCAATCCAACGGCTCTTCTTATTCTTCCGCCTCCAGCAGAAACCCTCAACTAGAGC
CCCCCCCCCCCAAAAAAAAAATGAAACCAGTCTGAGGTCCTCCCTCCCATCTGGTTGCAA
CGCCGCGTCATCCCCCACCTCGGGCGAGGTCCTGGCAAGCTGTCACCGGCGACGCCACGC
CGTTCCAGGCTCGAGCTCGTTGCTGCACTGCTCACTTCCAAAATCGACTGATCCAAGAAA
TATTTTCAGTTGCTTGATGAATAGCAACTGTACATATTAAAAGCTACCATCATCAGTTTC
AGAGTCCAGTTTCACCCAAAAAATACCAGACCAGTCAGGGATTTCTGCCCCTCCGTTTGA
AATTTAAATTTCATATTTTAGCAAGAATTTTTCCAGCCTCGGATTTGTTCACCAAGTAGA
AAACAGGAAACCGAGTTACAAAATGGTTTTGGTACCCTGAATCCCTGATCAGTACACACA
GTCACACACCATGCAAGTATGTGTCTGTTCGCATATGCAAAATGAAACTAAGACGGAACT
CTGACTAACCACCAGAGCTAACATGAAACTGTGAATTACGCATGGCAACAACCATATGGA
GGCAGTGAGAGTAAGTGGAACTGCAGTGGGAAGACCAAGTCGTGGGTCATGGCAAAACTC
TGGTTGCTGAGAACTTTACCTTGGGGAGGAGGGGGGTGAGGCGGGCGTACGCGTCGCTGG
AGGCCGGGAGGG