Contig Data
morexGenes
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Map Locations of contig_47457 (6819 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_47457

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63287 2 2745 bp MLOC_63287.1 Available Available LOC_Os04g58470.1, FRAME:-3, EVALUE:0.0, 13104.m06141 protein choline transporter-related, putative, expressed





CDS Structure of MLOC_63287






Contig Sequence (6819 bp)

>contig_47457 6819 assembly3_WGSMorex_rbca.fasta
AGATCTACCAGTTCAGGGGTGGCTTAAAGGAGGATTTGCAGAGGAAGGATGTCCCGGATC
AGAAGAGCAAGCTGCGGTGCATGAGAAGAAACAACCCTCAGAGCGAAAACATATTCTGGA
GCTTGGGCTCATAGACACCCCCTTATCTAGTCAGCTCAGAGGAAGGAAGTATGGGAGGAA
ACCCAATGGCCAAACGAGATAATTGCAAGGGTGACCACGTATCTCACAAACCTGGCCCGG
ACATGTGCCATATGTTTTTGCAGAAAGATCACTGTCACTATATTTAACCATGGACATGTC
CTTTGCGAAAATATTTTGACATGTACCATATGTTTTTGTAGAAATACCCCTGCCACTATA
TTTAATCATGGACATGTCCTTTGCGAAAATATTAGAAAGGCCTACGCGATCAGGATTCAA
ACGGGGCATCTTCCGATCGAACTTGCGCGACAATGCCACTACACCAACTACCCTCCTTTG
ACCACAAAAGGATACTACGGCTTTATAACATCGTAAGCTTAAACAAATAAAACAAAACGG
AAAATGACCAGACAAGATTTCTTTTATGTTTTTCAGACTTCGTTATTGTTTGGTTTTTCA
TGTTTTTCATTATTTTTCATTTCTTTTTTCCATAGTTTAGTATGGATTTTTTTTACTAAA
ACACAATGAACATTATTGTACTATTTTTTACATTGCAAATGGGCCTTGCCGCAAGTTTAG
TATTGTAATAATTCAAAGGTATTTTATTCCAATTGTACAACATTATTGTATAAATGGAAG
GCATTTTATACATTTTTCCATCAAATCTACTGTACATCAAATTTATATTTTCCATCAATT
CAGTTCCCTTTTTAAGTGTATATATTTATCTTTTTGGAATTCTTCATCTTCTTTCAGATC
AGGTATTCTTTGGGCCGTACACACTGTTTGTGTCGTATATTGAATAAGGTTCAATATATA
TATATATATATATATTAAAGGATGTGATGAACATTTTTTCTAGACATATGCGAGAAAAAT
AATTATTTCAGAATTCTTTAGCTTTTTTCAGATCGGGTATTCTTTGGGCGCACGCACTGT
TTGTATTGTATATTGAAAAACTATACACATATATATACATCTTATATTAAAAAATGTTCA
TCATATTTTTTTAAATGTTCATCTTATATTTAAATAAGATAATTTATATTGAAAAATGTT
ATATAAAGTGCACGCGCGCACGGTTTTCTCGTAAAAAAAAAATAACGCACAAATATCTTC
TACAAATACTTGTCTAGTTAAAACTTTGAACCCCGGAAAGACTTGTTGTTACTCCAAGTA
GACATCCATGATCTGTCTTTTTTGTTGGAGCCAAATGGGCATAAGATGCACTGGATCTGA
TGGTTCAAGTTACTACTACGACTAGTTTCCATCAGCAAAGTGCATCGTCATATGCAACAC
TTGCCAATCAGGGCAGGGGGCGACACGTACCTACATACATACTGATACTCCAAGTTGAAG
CTGGACAACACGTACAGGGAGGCAGCCAGCCAAGATTACTTGGACAGGAATCTCGATCTA
TCAAAGCTTCTACTAAATTACCACCACTCTACGTCTAGTTCTAAGAAAAAGAAAAAATAA
ATAAGAGAGATTCAGTTCAGGGTCCTTGAGTGAGTCTCTGCAGCTCGCCCTGCTCGTCCA
GCGTCTCCATGAGGAGAGGCGGCGCGTACTGCGCCGTCCCCTGGTGCTCCTCCGCGTCCT
GGCAGAAGGACAGGATGATAGTGTCGATGGACATCTCCACCACCGCGAAGAACAGCTTCG
CCACCGTGTACCCCAGGCCCCACGTCACCTGCACCACCACCACCACCACCATCAGAAGTC
TTAGTGATGGAAACGAGATATAATGTCGGGTTCCACATCTACACTGAAAAAACAGAGGAA
TGCTCACCAGAACGGGGACCAGCGGCGACGATATCTTGTTGTGCGCCGACTTGTACTTGT
GCGTGTCGAGCATGAGGAACGCGAAGAGTGCGCAGAACAGGCTCACGCACAGCTTCCCCA
GGAACAGGATCACGTCCCCGATGACATTCACCTTCCCAATGCGCAGTATGTTGTTCATTA
TAAGGCCGGTAGCGAGCACCGAAGCTTTGAAGAACCCTTTCCCTGTGATGGCAATCTGCA
AAACAGCAAAGAGAAGCCTTGTCAGTTCAAAAAGTTGCAACTCACAAATGATAGACAGAC
AAAAGGAATTCAGAACTATCAGGTCAAATGCGAAGAGATGAACAGCCCCAAATGGCACAC
CATAAAAGCCTAGTCAGCAATCGGGTACAAAGCATTATGAACAAAGCAAGCAACCAATGG
CATTGTGCTTCAGGACAGGAACAATCAGTAATAGAACAAAAAAATGTTCATGCTTACCAT
TATGTAGGCATTTCGATTTACAGACATGAGGGTCCAGTCGATGCAGCCCCGGCAGCACTG
AGATGAGGACGATGACACTTTCCCAAAGCAGCTCTCCCGAGCAGAACCAACCAGCTTCAA
CTTGCGGCGAAGGCATTCTAGTATAAACCGCACCCACTCAACAGCTGATACAACAAGCGA
GCCTATGGCAGCAGATCCAAGGTTGTAACGCATCAGCCGCTTGAGCGAAGAGACAACACT
GAAAAACGGTATATCATGCTGCACCAAAATGGCTTGAACTGTCAGTAAATGGTGAATGCA
GAAATATGGAGTAAATTTGAAGTGCGCCCATTTAGTTATTATAGTTAAACTTCTGACTCT
TAAGTGCTGTGCTTACAGATATTTCACCACGGGCCCAGTAGTAGGAAGCAACTGATCCGG
CAACCACAGTTGCAGAGCATGCCATAAAAAATTGAGTAGCCCAGTAGCAGCCAAATAAGT
GGAAAAGAATTGCAATGCCAATATGAGGGGTGTAATGGATGCTGTACCCACAGCAGTTGT
CACAGTTTACTTTGCCCAACTTCAGATCATAGGAACAACAATCTGTACTGCAGTCATTTC
GGACAACCTGGCCAGAGCTGAAGAGGTGGAGTGTGGCAGAAAACCAGAACATATAAAAGA
TAGCGAGGATAAAGTACGGCACAACTGGGAAAACTATCAGTGCCTGAACTTCACCAATGA
CCTTTGCAGCAACCTGAAAATAATTTTTCGATTTTAATGCACAGAAATTATTAGGTATAT
CACAATAGAGGTAGCGTTGATGCATCGTGCTTTTGGAACCAAGCATCGCCTTTGCATATC
CAGTGAGCTACTTACCTTCAGGACAGGTGTGGCTATCAGTATACGCCGGACAATAGCTAT
CGAGGACAGAAAGGCAATGATCATTATTACTGTCATCAGCACTGTGGCAACATGAAGATG
GCTTATTTCCTGGTAAGAAGGTAAATGATCAGATAACAAGCAGCTTGACCTTGTAAAAAG
TTGACTCGATTCAGAGCACTTACCCGCCCGCTGATGTGAACATATGGATCACTTTCACCA
ATAACAACCGTTAAGGGATCATTTCCGAGCCAACCAGCTGAATGTATAACGTAGCCAGTT
AGGAATAATGTCACATGCCTCAGACATAACATGGCAAATGGCACTAGTGATATGTACCTT
TGATGTAACAAAACATAGTAACAGATACTATAAGGGCATTGAAGAGCACTACTGTTATCC
ATGTCATCGCAGCAACAAAATAACGTATCATAAGCAACCAGATCACTGACAAGAAAAGAG
GAAGGAGTGCACCACAGACGATTAGCACAGGCCAAGACTTCCCAATGTCCGCAACATATC
TCTGCAAATAAAAGAAAATGTCAGATGCTATACATTATTGGTTGCATCAGGGATTTACTT
TACAAAAATAGTAATGGTGTTGTGGAGAGTGGAGACTCGCTGTAAATAACCACTATCAAG
TACAAACTCCTACAAGGACAATCACAGTGCAGCAAAATTCCTTTGAAGTTAGAATAAAAT
TATAGTTGAAGTTTAATGCACGTTCAGGATAAACAGTGGGAGTTCCAAGGACCAATTGCC
ACTTAATTTCAGCATTAAGCAGATAACAAGAAGGGAGATTGTTTTGGCTCCTGGAAGATT
AAGAACCTTGAGGACTGCAGATCTGGAATCGATGGCCTTGTGGATTGTTTTATCTATAAG
CATATTCTGTTCAATGTTTACACCACCCAGCTGTAGCCAGTGCGTCAAAGAAACATTGGA
TGCCCGGGCGATATATTGGCAGCTCCAATAGACTGAAAGAACAAGAATATTCTAAATTAG
TCATCTCATTGTACTAGTTGACTAACTCGAGCTGTACTGTTGCTCCATGCTTACACAAAG
GTGTCATGAAATGGCTGAGAGTGAAGATTACCGGCTTACCGTTTACGCTAGGGAATATGA
CAGGGTAGCACGGTCCCTGAAGCTGAAGGGAGCTGTTCCTCATATCAGGTGTTAGAACAT
CGAAGTAGTTATAGTCCCTATTGATCCAATCATCAACCGAGAGCCTGATGTCCCCTTCCG
GGTAATCACAGACAAAGTTTAGTCCATCCGGTGCCGGAGTAGGGCACTCCATCAAGCAGA
TGGCCTTGGCATCTGCCAGGTTAGTCTTGCTGCCCTTGAGTCCACTTTGGTACACCTGGT
TCGGGTCCAACCAATACCTGACCTCGAGCTCGTGCACGTCAGGGTCGCCGTGCCTGTCAC
CACAGACGTTCCCTTTGTAGTCCAGCTCGTATGTCAGCCTGCACGAGCAAGAACAAGATG
TCAGTCTTACCCTGCCCATGTAATCTAAATGTTCAGGTTGCGAATAGCAAGAACATTCCA
GGTTGACAAAATGCTACTCCCTCCGTCCCAAAATAAGTGTCGCAAAATTTGTACTAAGTT
AGTACAAATTTTATACTAGATCAATGACACTTATTTNNGGACGGAGGGAGTACTATTTAA
CAGAGAAATGTGCTTCCGGCCAAGTCTTCTAAACTACTAATATACTCCCTCCGTTCCTAA
ATATAAGACCTTGTAGAGATTGTAGTATGGAGTACATACGGATGTATATAGATATATTTT
AAAGTGTAGATTCACTCATTTTGCTCTGTATGTAGTCTATAATGAAATCTCTACAAGGTC
TTATNNTTAGGAACGGAGGGAGTAGATGGCAGGTACTCAAGAGCAACTATAGGATAACAG
CATCAAAGAACAATTGCAGAAAGAAAGGAAAAGGTGACGGTGTACCACGTAAAAAATAAC
TCGCCGAAATGATTGGATGACCAACAAAATTCCATGTACATGCTTCACATGATTACAGAA
CGGTGGTAGTGGTAGTAGTAATAAACCGATATAGCTATGTACAAAGTTACAAACTGCAAT
AATGATACTCAAAAGTTTTCACAAGACTGAATTCATGCCACCCCGAAAGTCAGTGGTGAG
TACATTGCAGTGCGGTTAGCCAGAGCATATACTCGTATGTAGGCAGGGGCAGAGAAAGTG
CCGTCTGCTTTGAGCCCACTGAGCAGCACGGAGAGCAGAGCACAAAGGAAAAGAAAAGAA
AAGAAGCCTTTGAAGAGGGTTTTAGGGAGGGGATACAATTCCCAGGGCCACCACACACAC
ACAGCTCTACTGCCTGTAAGCGGGCATCAAAGTCCGGAAAGCAAAGGCGGCTTCCACCTT
TTCTTGTTTACATGGCCATAAAAATCGGCTGGCAGACCCTAGCAAGAACCAGATTCGGTT
TGGCACTAGCAGCAGCAACATGGGCATGGCGGCCTCCCTCCTCGGAGCTGCTAGTTCCAG
TTACACAGTCAGCGAGACTCGTTCATGAATTCATTCAGTAATCAGTACTGTACTAGTAGT
AGTAGTAAATCCTGGAGCAGATAGTCAGCGAAAGCAACAGGAGCGAGCGAGCAAGCAAGC
AAGCAAGCGTTTCTTTCTTTCTTTCCCCCCTGATTTGCTGCTGCTGGTACTAATTAATTG
CGCAGGAAAAAATAAAATGTAAAAAGAAGACAATGGGCTGAGGAGCAGTTGGGAATGCGC
GGCGCAGACGGAGATCTGCGCGCAGGAGAGGCAGGCAAGAAGCGATGAATCTGAGGAGGG
GGCGGAGCAGACCTGAGCGGGTTGCCCTGGTTGAAAGCGAAGCTTGAGTTGACGATCATG
GCGACCCAGAAGGCGGCGAAGAGGACGAGGAAGGCCAGGTCGCGGCACCGGCGGTCGTGC
CGGATAATGCCCAGGCTGGCCGTGCCGCCGCCCGCGTCGGCGTCCTCTCCCCCGGCCCCG
GCGGTGGCGGTGGCCGAGGGGTAGCGGCCGATGATGGCGCCCAGCGGCCCGCCCATTGAG
CGAGCACGCGCGCGGCGGCCTTGCGGCGGCGGCAGTGATCTGCGGGAGGGGGTGGAGAGC
AAGCAGAGCAGAGCAGAGGAGGGAAGGATGGGGAGCAGGGGAGTGGGAGTGATGGGTGTG
GGAGTGTGGATTTGGCCTTTTCTGCTGCTGCGCTCGTGGGAAAAGCAAGCGCAGGAAAAG
GAGGAGGGGCGGCGAGAGGAAGGGGGACCCGGTCGGGGTTGGGGTTGGGGTTGGGTGTGC
AGGCGCTGCACATGTATGTGTGGGTAACTGCCGTCAGTCAGTCGTCATTACCAGTGGTAC
TACTCTACTAACCGCGCGGTCAATGGGGACGGAGTTATTATTAACCAGAGACGACCGCGG
TGGCCGGAGGAAGAAGCGATGGGCCCGGCCGTTGTTTCTGGGAAACTGTCTTGTTCTCGC
ATCAAAAGGCACGCCGACCACCGTCGCAAGCCGTGGTGCGCCTCCGCCCGGGTCCAGAGA
CGGCGAGCTTCGCACAGCATAAATTATACGAAGTAATAC