Map Locations of contig_47441 (5841 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_47441

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63270 2 982 bp AK374915 Available Available None





CDS Structure of MLOC_63270






Contig Sequence (5841 bp)

>contig_47441 5841 assembly3_WGSMorex_rbca.fasta
TTCTGATGAGCGAACTAACTACAGAGCTGTGTGTGTGGTTGGTTGCTTGCGTTCGGTTCC
ACCTTGTATTGAGGATTTGTGGCCTCTCGACTGTAACACTATGACATCTTAATAAACTCC
CTTTATCCCGCAAAAAAAAAAATACATGGAGCAGCATGCAAGAACAACCACTGTTAGAGC
AGCTTGATTGGTTTTTCTCTTCGGCAAAATGGATATCAGTTTTCTTCAATACTTTTGGTC
AAACCCCTGGCTAGGCCTATTTATGATCATACTGGAAAAAACGGTTGTTGGGATAACAAA
ATGCTGGAAAAAACGTTGCACATATCGTTATGTCAAGCTGGGAGAAGGAAATACAAAGTA
CTTTCATTCGAGGGCAACTGAGAGATACAGAGTTACAGACACAACAAGATGCCCTTGTTT
ACTCTTGGTGATGGAGGAATAGTGGAAGATCGTGCAGATAAAGATGCGGCATTTTAGTCC
TGTTTCAAAAACAGGATGGGGGTTTCGACAGTGCTGATTTATGATTTCAATATGGCTGAG
ATAATTCAACGGGTGCGTACTTTGGAAATCCTCTCAGCCCCTTTTTCACAAGTTGAAATT
GATAATGTCATTAAGATTACTAGATGATGCCCCAACGCGTTGCGGCGGGAAACTTGCTAA
AAGAATCATGAAAGTTGCTAAAAAACATCTATAACTTATGAGAAGCGAATGTAAGCTTAC
AAATGAAAATGAAATATAAAAAGAGGAAAAAAATGCAGTAAAAAGAATGTCATTTTTAAC
AAAAATGTGAATGTGAAAAATGACATTCTTTTTATATAAGTTCACATTCTTCCAACACAT
ATATTGTCAATACAAAATCTAATGCAAAAAGTAANNNNNNNNNNNNATGCATGAATTAAT
GATGTGGTGCTTGCATGCATAGAGTAATAAAAAAATAATATAATTTATGACTTACATGTA
TTAGTTGCTCATGTGATATACTTGCCTGTCTAGGAAAAATGGCTAGTGGGTTGTAGTTAT
TTAGAAATAGAAGATTCCGTGTGATTGAGCACCTGGGCTGGGTTCAATGGGCTATTTTAA
AAGGTTTGCTGGAATATCATGCACCAGACTTTTATCAGTTATGCTCTGACTTTTGGGAGG
GAAAGATTTCCTTGGATTGTCTGACGCACGTCACCTTAATCCCCAAAAAACTGACGCCGG
AGAAGATCAATGGTTTTCGCCCTATCTCATTGCTGAGCCATGTGCTCAAAGTTCTGACCA
AGACTCTTGCGGATAGACTGCAGTCCTGGATTCTCAAACTAGTTCATCACAACCAGCACG
GCTTAATCAAGAGTCAGCACAATTCAAGATTGTTTCGGTTGGGCCTTTCAGTACTTATAT
CAGTTCAAGGCTTCGGGTTGTGACATTATTATTCTGAACTCAACTTTGAGAAAGTATTGG
ATACGATGGAGCACTCCTCTATCTTATAAACATTCTAAAGCACAAACGATTCAATGACAA
ATGGATCATGTGGATAAAAATGTTTGTTGAGCCCGGGCTCGTCTTTGTTTGTGTTAAATG
GTGTGCCTGGCACTGAATTCAAATACCGCAGGGTTGTGCACCAAGGTGATCCATTGTCTC
CGCTATTATTTGTCCTGGCAGCAAACTTGCTTCAATCTCTAGTCAACAAAGCTTGGCGTG
AGGGGTACTTGCAACTCCCAATTGGCCAACCCGCCTTTGAAGATTGTCCCGTCATCCAAT
ATGCTGACGACACAATCCTAACTTGCATGCCGACAAGGCCGGGCTTCAAACGGTCAAAGC
ACTGCTTGATAGATATGGCTCTCCTACAATTCTGAAAATAAACTACAGTATACTCCTATC
AATGTTGCGGCTGGTGTGGCTTCTGATCTGGCAAATATGTTGGGGTGTTAAGTTGGAACC
ATGCCATTCGCCTATCTTGGTCTCCCCTTGGTCACAACGCGACCAACTGTGAGAGACTTA
ATGCATAGCAGTGGGCATCGTCTCACATGCACGATCATTTGGCTCTCTTATGAGGGAGAG
TTCAGCTTATCAACTCTGCCCAATCGTCTCTCCTTTCATTTGCCGTGTGTGTTCTCAAAA
CTTCCCATCAAGGTGACTGAGTTGTTTGATCGTGCTAGAAGGCATTGCTTACGGAGAAAG
GTTATGGATCGCGATGCTCGTACTCAATTGTTAGCTGCCTGGGAGCTAGTATGTCTGGTA
GGGGATTTTAAACATCAAAGTGCAAAATCAAGACCTTCTTCTGAAGTTTATTCATAAATT
CATACATAAGGATGTCCCTTTAGTCATGTTATTGTGGTTTAAATATTATGATCAGACCCC
TCCGCCTGCATTCCATCCCTGCAGCTCCTTTTGGTGAAAAGATGTGTTCTGCTTAATGGA
CATCTACAGGGGGGTCACCACATGTATTCCTGGCTCTGGTGAAACTATTCTGATCTAGAA
AGATGCCTGGGGTAGTGTGGTGATTTTGCAGGACAGTATGCCATAGTTGTTCTCCTTCTC
AACCAATGAGGATGTTTCTCTGGCTTGATTTTTTTAAAAAATTTCAACCTCAAGGGAGCC
TCCACAACGCCCTACTCTACCAATAAGACATAAGTAAAGAGCTGACAACACTAGAAAGTA
CAACTACACAAACACATGAGGTGCTTCTAAGGGCATGTTTGGGACTGCTCTGCTCCTTAA
AATTCAGCTTTGCTCTAGAAAAGACAAGCCAAACGGGATAACTCCACGATATGCTGCTCC
ACAAAAAAACTAGAATCTGGGGTACAACTTCAAAGTTTTTATGAAGCTCCTAAGAAGGTG
CTCCAAAAAACTCTAGAAGTTGGAGTTGGGGGGAAATTACCCACCANNNNNNNNNNNAAG
TGGATACCCCTTCATTTCTTTCCCTCAACCAATCAAATAGAATTTTTACATCAAATTTTC
TATTCTTGAAGCTGGAGCTAGATGGAAGCCAAACATTCTCTTGATAGTGCGATAGATTCT
ATATAAAACTGCTCCAAAGTGAATTTGATGAAGTGAAGCTGATTTTGGTGAACTGAAGCA
GTCCCAAACAGGCCCTAAGACAAAAGATAAACCTGAATTTAGTGTCAGGAACTGACTGAC
TTGTAGTTTTATTTTTAAAATTATATCAGCTTTCCCCATCTAACTCTCTTTTAGTGTCCT
CCGTGCAATTGGAAAACAAGGCAAAATGTTCAGGGTGTTCAATATTAGCATTTCACAAAG
ATGAATAAAACTTATGCACCAAGAACACTCCTTTCACACTTCAGGAAGTGGAAACTGGCA
AACGCAAAATTCATTGATCTCTATATTTAAACGATTTGCGGATCTTATCACAGGCAGCCA
CCAGACTACGTCATTTTATGAATATAACCAGCTTGAAGATGGATAGTTGGTTTTTGTTAC
CTCCCCAAATGTTTATGGCTCATTTCTGAAGGTCAGTTTGTTCTCAAACTCACAACATTG
TCTTGTATCATCATTCATCTCCATAACTCTGAACATACGTATGAGCATGAAAAAATCACC
TGCTAACAAGCCTGCAACTCCTTAGCTTACTTCTCGACGAACGATTCGACTGTCTTCAGC
CACCGGAGCAGCTCCATCTTCTCCTTGTTCGCGACGTAGTCGTGCAAGAACTCCGCGAGC
TCGGCGTCCACCTCCCTCTCCAGCAAGAACTTCTTCACGGCCTCCCTCTCCGCAGGCTCC
AGCTTCCTGCGCCTCGACGTCAGTCACAGCGAACAAAATTCAGAGAGCACAGAAACCAGA
GGCACCCAGCCAAAATGGACTGAACAAAATTAGACCGTACGTGAACTCGCGGGCACCCCG
GTCGTCGGTGGCGGCGCCGGCGCCACTGAGGGTGAGCACGTGGCGGACGGTAAGTTGGTC
GGGCCAGGCGGAGCAGATGAATCCTAGGACGCGGTCGGCGCGGGCGACCTCGACGATGAG
GCTGAGGTGGAGGCGCGGCCCTTGCTCCAGCGCCTCGACCCGGTGGAAGAGGGACGCGTC
GGGGGGCGTCTCCGCGACGCCGTCGAACAAGGTGGCGTCGATCTTGATGGCCTCCTCCTC
GGTCCGGGACCCGGCGCCTCGGCGGGCGGCGCGGAGGCGCACCCACTGCTCCCCCGGGCG
GTCCTCCACGGCGAACGACTTGAAGCCCGTCGGCGGCTGCGAGGGGACGGCGGGCGAATC
GGACGGGGAGATCACGTGAGGTGGAAAGGGGCGAGGAGTGAGGGGGAGAGGGGCGGTACC
TGGTGGGGAGGGCGGCGGTCGGCGGCGTAGGAGATCTCGGATCGCAGGAGGCGGAGCAGG
CGTTCGTCGAGCGTGGAGCGCAGCGGCGCGACGGCGGTGGCGGTGGCGGTGGCGGTGGCG
GAGGAGAATGACGGGACCAGCCTGGGCGCCGTGGGGGCGGCCGGGGAGAGGAGAGAGGAG
AGCGCGCCGCGGCGGCGGAGGAGGGCGCGCGCCATGTGCTCGACGCTTTGCCTGGACGAT
AGGGGCGCACCGGGGAATGGAAGCGATCAGCGCTAGGAAATGGGCCAGGCCCGGACGCAT
TTGGCGCACCAGCAGGCCCAAGATTGTTGTTCTAGCCCAGTCTGCGTGTTCGACCCCACA
CACTAAAGAAAAAGTAGCCACCACCACATACGTACCCTCTCGCTTAGGGTTTTTGTCCTC
CGGCGGCGATCGGACCGCCGCTACTGTCGGGGTCGTGTGAAGGTAGTTTGTCTTGATGAC
GGAGGCTGATGGATCCTCATCTTCCTCCGGGTCGACCGGGAAGAACTTGGAGGAGATGTT
GCAGCACCTGGACTTCAAGGATGAAGAGCTGGATGATGTGGTTGTGGATGAAGCGGAGGT
TAAGAAACTTGAGGCAGACGCAAGGTGGCTTGCGATCGGAAGGCTGAACACTTCCCATCC
CTTCTCCTCTTCGGCAATGTTTGAAACCCTCAAATCCGTCTGGGGGTTGGCGCAAGTCCC
AAACTATGGAGAAGCAGGTGATAACCTCTTCGTGTTCCACATGTTTTGCCTTGGGGATTG
GAAGAAAGTCGTCCATGGCGGTCCTTGGTTGTTCCGAGGTATGGGGCTAATTGTAGAGGA
TTATGATGGGAAGAAGGACCCTACTTCAGTGGTCCTTGATGGTCTTTACGTCTGGGCTCA
GATTCGTGGGATCCCAGATATGTATCGTGATGCAGACACAGTGGATCAACTCGCTCGCCG
TATTGGCCGTGTCAAACAAATTCAGCTTTCACCAAGTCTATTTTATGAAGGTGATTATGT
ACGAGTGCGGGCGCGAGTGCTCGTGGGCAAGCCTCTCACCAAGATTACATCTCTGACAGT
CACAGGAGAGGGTCGTCGTATGCTTCCTATCAAGTATGAAAAGATACCGTATTTTTGTCA
AGTTTGTGGATTCATTGGCCATAACCATGAGGAGTGTGGAGATGGCGTTTGGGAGGCAAA
ACAGAAGCAATGGGGAAGCTGGATGTTGGCACAGCGAAAGGAGGTAGCACCGGGACGCAA
GCTGAAGGCCACGCAGCTCACGAAGGTCGTTCGAGGGGTCGTGGTAGAGCAGGCAGAAGT
GGTCGAGGTGAACCTACTCCTCGCCAGAGATCACCTCCCTGCAAGAGATCATCCCAGGAT
GCCGGACTGGACGCGGGAGAAGATGAGGAGGAAGACGTGACGAGCCCTCTAAAATCAAAT
GAGTCTCGCGAGATAGTGAAGGAGACTGAATCTGCAGCCCGCCGGAGCCTGAACTTGGTT
CTGTCAACTAGTACGTCTATGCAAGACCAGCAAAACCATAAAGTGGAAGTTGCATCAAGC
AGTAACCTGAACCTTGTACTT