morexGenes - Barley RNA-seq Database

Contig contig_474006

Source Contig contig_474006

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_474006 (5772 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_474006

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63215	2	1073 bp	AK371783	Available	Available	None
MLOC_63214	1	188 bp	AK371783	Not available	Available	None

CDS Structure of MLOC_63215

CDS Structure of MLOC_63214

Contig Sequence (5772 bp)

>contig_474006 5772 assembly3_WGSMorex_rbca.fasta
GGATGCATGATCATGATGCAAAGGAAGACAAGACAAGGCATGACCACATGAAATAACACA
TGAAATGATACTTCCATAACCATGACATCATGGATCCAAACATGGCAAGGTTCCANNNNN
NNNNATGTTACACTTGGGGCATTACATATGCCTTCTATTTTTTTTAAAGATGAGGGTGGC
GGTGGCAGGAATGTAATTATCTCCAACTTTACAAGGGTAATGGGTCATTAGCAATCCCTA
ATCTGATTTTAGCTGGGGTAGAGTAAATTGTGAGTTTTTAATAATCTGTCCATCTAGTTT
TTATAATCTACTCCCTCCGTTCCTAAATATAATTCTTTTTAGACATTCCAATAGAAAAAC
TACATACGGATGTATATNNNNNNNNTTTAGAGTATAGGTTCACTCATTTTGATCCGTATG
TAGTTCTCTATTAAAATGTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTACACCATA
AACTGTCATGTTTGAAGACATAATAGATTATAAAAACTAAAATATATAATTTGAATGGTT
TCAAACAGGGCCTAAGCATGTTCAGTAAACTAGCATTCCACTACTACCCACTAGACTGGA
AATTCAGTCACAACTGCCACATTTTCGGTTTTGAGAGAGCAACTAACATCCCATTTAGTA
ATCCTAGCAATAAAAGCACCAGCAATGGAGCAAAAGTATAGTTGAAAATATTGCAATTTA
TTCCACCGAAAAGTTGATCAAATGGCAGGAAAATTTCAGAGTAAATGACAAGTTGGGTTG
GGGTTGAGGGTGGCCGCCACCTGGGCGTCGGGATTGACGCATCCGGTGGTCTTGGAGTCA
GCGTTTGCGCAGCCGACGACCTAGGGGTTGGGTTTGAGGCTGTCGGCGACATGCGGGTCG
GGGTTGGGGCTGCCGGTGATCTAGCCATCGGGGCCGGCCGAGGTAGAAACTACAAGGCAA
GGTAGGTTGAGAGCGGATCAGTGTAAGGCGGAAGAGAAGGAACGCGACGGCGCCTCCTCT
ATCCGTTTCTATATGTCCATGCACTAAGTGAAACAAGGCTGGTGGATTAACTGTGATTCA
ATGGGCGAATATGGCTAGCCCGCTTAATTTTCTCGTTGTCCCATGGACGCCCATTATAAA
CAATCTCAGTGGGATGGGATGGCTAATCCCACTCCATCTACTCCCTTCGTCCGGAAATAC
TTGTCCTAAAAATAGATATAATGGATGTATCTATAACTAAAATAAGTCTAGATTCATCCA
TTTCTAGAAAAAGTATTTCCGGACGGAGGGAGTACAACGTAAAATCCATTGGTGTTCGTC
ATTGAGGCCTTTAATTCTTGAATTCATGAAGATTAATGGCCTTTGTTCTTTCTCATTCTG
CATTGACCGCCGGGAAGGACAGAGTCGCAGCTCCAAGCGCTGGCCGTTGGTGGCTCTTGT
GGACACGCTGCCGGGAGCCACGGTCACGCGTGTGTGCTTCATAGGTCTCTCGCGTGGGCA
CCCACTTCCGCCAACAACACCGAGCTTGCCGCAGAGTAGCCGTTATGAAATCGCTTCGCC
AGAGACCACATTGCGGGAGTAAGAAAAAGAGAGAAACTAATAAAAAAACTGTATATCTTT
TATTAAGGTAAACGTTTACAGCCGGTCGCCTCTTGCCTCCCTTGTCCTCTTCCCACGAAA
CGCTCTGCCCTTATCCCCTCTGCATCATCAGTTTTTTTTTATTCCCTCGTCCTCCTCCAC
GTGCTGCTCCGACGAGCGGTCACCATCCACTTGCCTGTGCTGCTCCGACGAGCACCTGCC
CGCGCTGATCCCACAAACATCCGCCCACCCACCAACATTGCCACGGTAACCAACGCTCGT
CGCCATGGCATGGTCGGCGAAGTTGCGTCCATGACCATAGGCGTAATTTGCTACATGCTT
CAACCAGCATCGAATTTTGCTACAACCGCTTCCCGCGCTGCTCCGACGAGCAGCCGCCAT
CCACATGCCCGTGTTGCTCCGACGAGCGCCTGCCCGCGCTGCTCCGATGAGCAGCCGCCC
ATCCATCAACGCTACCGAGCGGCAACCAACGCTCGTCGCCATGGCATGGTCCGGGAAGTT
GCGTCCATGGCCATAGGCGTAATATGCTACATGGTTCAACCGACATCGAATTTTGCTACA
ACCGGTGTCACATTTTGCTACAACCGACAGCATGGCGAGTTGCATCCCTTCTCTCTGTCT
CAACTTCTCCATGGCGAGCGGAGCTGCAACTTTCAGGTAATTTGCTACATGCTTCAATCG
ACATCAAAATTTGCTACAACCGGCATGGCATTTTACTACCACCGGTGTCGCATTTTGCTA
CATCGCACATGACGTCGCGACTTTTGCTACAATTGGTGTTTCATTTTGCTACAAGCGGCA
AATGTTTTTGCTACATCCATTCATGGCGAGTGGCGACCCACAACGACGACGGCGTTTTTC
CTGCAACCGTCATTCCTTTTTGCTACGACCGACGGGTTTTTTTTGCTACATCTGTTTTAT
GATGTGGCTCACGGCCATTTTTGTCTGCGGAAACTCATATAGCGGGCATCAACGACGAGG
GCAGGGCAACACACCAAAGTGCTGCAATAGAAGCGAGGTACACTGCAAGCTTGCAAACAG
GTGTTGCGACCGACGACCGTCGCCATCGAAGTTGCAACCATTACCACCAGAGCCAGTGAG
GAACACAAGAGGTGACGAGGCGAATGAAGGGGGTTGTCATCGGAGTTGCAACCACCGCCA
TCAGAGCCGGTGAGGAACACAAGAGGTGACAAGATGGACAACGGTGCAACGACAAGGGAG
GCGGCGGTGCCCGAGGGAGCTGGCAAGCTAGGCGGCGCCTCTCCTGCTATCCACATGGAT
CCAACACACGTTGGGGAAGAAAGGGAAGGGGATCTAACGGTCTAACATGGTTCGACCTGA
CAGCTCACGCATGACCGGCCTTTCAGGCCGATCCGTCGGCCCTTTCTTTATTAAATGTGA
TATGTTATTTATACAAAGAGAAGACTGAAGAGAGATCACTAAGAAGGCGTCTGTTTAGGG
ATATGCCTATTCGGCACGGAAATGATGCAGTAGATGCCACAGCTCCGTTTACATACGGAA
CAAAATGAGTGAATCTATGCTACAAAGTATGTCTATATACATCTTTATATAGTTTAATAA
TGGAACCTCTAAAAAGACATATCTAAGAACAGAGTACAAACAACTTTTAAAATGGGATCA
ATGCTACCAATATAATTTCTCAATTTGAGTTCACTTTTACATCAAACACTAGTATCACAC
ACATAGCAGTGCAAGGTGCATCTTTCAAAATGGGAACGGTGCTGCCAACATAAAGTACTT
TCTCAACCTTTAAGTTCACGTTTACATCAAATACTAGTATCACACATAGGAGTGGAAGGT
TAGTCCATCTGTCCCAAATTACTCAAAAGTTCTAGCTTTGTGTAAGTCAAACTCTTCCAA
GTTTGATAAAGTTTATAGAAAAATTTACCAATATCTACAACATCAAATATGTATAGTATG
AAAATATAATTTATGATGAATCTAGTAAAGTAAATTTGGCGTTGTAGATGTTGGTTCACT
TTTTTATAGACTTGGTCAAACTTGACAGGGTTTTAACTTGGGGCAAACCTAGACCTTCAA
ATACTCCCTCCATCCCAAAATTCTTGTCTTACATTTATCTAGATATGAATGTACCTGGTC
CCGCTTTTCTATTTTTAGACAAACCTAAGACTAGAATTTTGAAAATTCTTGTCTTACATT
TATCTAGATATGAATGTACCTGGTCCCGCTTTTCTATTTTTAGACAAACCTAAGACTAGA
ATTTTGAGACGGAGGGAGTAATTTGGAACGGGGAGAGTAGTTAGCAATGTCTTTCTGTGG
ATCACTGCAACTGGTGAGGGATTCCAGTCAGTCATTGTGTGACGAACAAACAGTAGAAGG
CACTCTGCCATTAGCCTTCAAGGCTTTCTAGAAATCATCAAGCAGAGCCTCATATTTGTA
GCAACGCAATCTTTCCGAAATAATCAACGAAAGGCACGAGCACCTGTGACAGAATGGAGA
ATGGCAATCATCATTTGGTCAGGATTAAAACAGTTCCTTGATTCAAAAGCAAACAATACA
CCACCAAATCCGTAGATGGATCAAAGATTAAGAAGAATGACACAAGTTGAAATTATAACT
TAACAGATTTTGCTCCTAGGGAAGTATAAAATAGGAACCAAAAGCACAATAGCATTGCAG
TTCAAAGCATGCATTGCAGATTTGTGTCTGCCAATATTCTCAAGTCCTTCAATATTAACA
GGAAATATGTAATACAGTTGGATTACCAGCACAAAGCAAAAATGGAAAATAATCCATTGC
ACACATAAAAATTAGGACTTCCCAGACGTTGAATTATCGCTGAATCATTCAACTAGAAAT
CAATGCAAGGGAAATGTGTATAAAATGAACATGTTAATGTCATGCAGTTGGTCCAAAAGT
TACAGGACAGGGTTCAAACAGCTAACTGTATCTAAATTACATTAACTGTCGCAAGAAAGC
AATCAGCAGCAGCATAAAACTGGAAAGATCAATTGTACCTCAGGAATCTACAGCAATTGG
AGTCGGCACAGAGACTCCATCTATGGATACTTCAGCTACTGTATCAGAATCCATGTTATT
TAATACTGGCACCTCTTTCTCCCTCCAAATTGCATGAACTTCATCAGTTCGGAACCTTTG
AGTAAATGTCGAATCCTCCAGGGGTGTGATCACACCATGTGCATATGCCAGTAAACCAGT
GTATGCAATCATCGCACCATTGTCTATACAATATCGATCATCAGTTGCAAACAGCCTACC
CCCTCTCTCTGAGCACATAATCCTCATCATCTCTTGCAAACGTTCATTGCATCCAACACC
ACCAACAATAAGAACATCCTTCGAATCACAATGTGCCATGGCACGTTCAGTGATTTCAAC
AAGCATAGCAAAGAGAGTTTCCTGGATATGGCCACCAACTGTCTTAATTAGAACATATAC
AACTTATCTCCAATCAAAGTAAGCTTAATCATTACATGTACAAGGATAAACTGAAGGAGT
TCAATAATACATCATACCTGCAAAGAGTAGCACAGGTCTGCTGGTGTGCACTCATTATTT
TCAAGCTTCTCAATTGCTGCAGCTTCGATGAAGCTCAATATGCCACTAAATGACACATCC
ATACCCTTTACAACATAAGGGAGGTCGATGAACTTCTCTCCCTTCTTTGCAAGCTGGAAG
AGGGGAAGACATGTAGAGTAGACTGAATAAACATGCCACTGGGAAAGATGAAGACTACAT
GACACAACCATACATCTGTCATGGGAATGGGAATAACCTTTTATTTCAAAAAGGATGGGA
GGGAAGGCCAACATGAGATGGAAAGTACACACCAATATCACACTTACATTGCACAACTGC
TCTTAGTGTTTTAACATTCTTTTCTCATAATCGTGGTAGAAACCATTTACGTTGTATATT
CGTTTTCATTTTTTATCCATACATTGAGTTACTAATGAATCTGCTTCATTCGTTGACTCT
ATTTCAAACATTAATTTACTCCCGCATTTCAAATCAGCTTTTCATTTGCTCAATACAGCC
TCTTTGATTCAAATGATTACTTAGAGGGTGCTTGGATACGTNNTAGTCTCATGACTAAAA
GTAATGAGACTAAAACTTGCTAGCCTCACCCATGCTTGGATCCAAATACTAAATAGACTA
AAATCAAGTTAA