Contig Data
morexGenes
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Map Locations of contig_47394 (7526 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_47394

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63209 1 1556 bp MLOC_63209.1 Available Available LOC_Os09g28340.1, FRAME:-3, EVALUE:2e-163, 13109.m02793 protein expressed protein





CDS Structure of MLOC_63209






Contig Sequence (7526 bp)

>contig_47394 7526 assembly3_WGSMorex_rbca.fasta
ATTCAGCTGCTTATACTTGAGAGTATCCTCTCACTTCCCTTGGCGAACCAACAAATTGGG
TTGAATANNNNNNNNNNNNNNNNNNNNNNNATCCCACGCGCTGGTGGGCTATCAACAACA
TTTTCTAGTTTCGTTGCTGAGAAGTGCTAGCAGCATTCTTCTGGNNNNNNNNCAGGGGAA
GGTGTGTTGTCACAGAGTCACACGTCGCACTTGATCTACCTCGCGCTCGACACCCTCAAC
AACACTTGCTGGGAAATCACTGAAGACAGTTAGGAAATGCTAAAATCAAAATTGAAACTG
GGACTTCAGCACTAGAGGTTCGTAGCCAATGAAGATGTTGGATCTTCAAGGACACGTACC
TTCGAGTGTAGAGAGGACGGTGTCGGAGTTGAAGTGTCGCGTGGACAGCGTGCTCGCTGC
GGACGAGGAGGCTTTAGCCGACATCTGTGCCTCGCTCGCGCATGTCGCTCTGCCACTGCC
ACGAGCACCGGCCAGACGCTTCGCCACGAGCCGCCAGGTGTTGCCGCTTGTCGTGCCTCC
CCGCTATCCATGTGGTCAGTCGGACGCCTTCACCGACCGGGGCTCGCTTTCGATCCAGCG
CGATTTTCCCGACTTCTCATCGACAAGTGAGGGGTTGCAGGGACCTCGCCCCGCTCTAGT
GCTCTTCGTCGCGGATCCAGACACGTTGCCCTAGATCTAGCGTGCCAGAAGAAGGAAATG
GGAGAGAGAGCGGGGCCGGATGCATGCGTGAGGAGGCCGAATGGTGTGGTGGAGTATGCG
GTGGCGGTTTTTCCTTTGGAAGCGTGGGCTGGTTTTTCGGGTTCCTTCGTGCGTGTGGAG
CGGTCTGTTTTTATCTACTCCATGCATGCGAAGGGAGGGTGAGTATCGATCATTTGAGGC
GGGTGGAACGAACCAGGTCAAACCATCACGACGACGATAGATTTTCTTTTAATAGTATAG
ATCTCAAAAACTTACTGTGGTCTGGTTATTTGATACGAGAAACTTGACGAGGGTATGTTC
GTTAGTTATCTCGTCGGTGTGACCGTGTCTACGCCACTACTATGCGACCGTTCTTCGCTA
ACATGGGCTGGACGTGTCACTAATATCCTATGACCACCCATGCTCGCGATGGACGCATGG
CACGGCAAGCACATCGCACCATCGTAAGCGATGGTGTCCACTAGAAAAATGCCACGTTTA
CCCGACTTCCTCACATCAGTTTCTGCAAACGCGGCATGCCACAACACAAACTTACCCCTG
CCTTCATGTCAGTATGGCCGGGGTCCTCACTGAAAGGCTTATCATGTGCGGTCTCTGCTT
ATGCGTCTGTCAAATGATTGTTATCATCCAATCATTACGGCGCCCTGATCACAAGGAAAT
TTCGGAGAACACCGGCGGCATCGGGGCAGGCCTCCCTTGCACGGCAGGCCTTTGCGTTGC
CACGGCGGCCCCAACAAAATCCAGGTGGATCCGCCCCCGAAAGCCGATACAAAGCCGAGC
TGTGGCCGAATCAAATCACACCCGCTGCCTCTCACGTCCTGGCTGTTGTGCTCCCCCGCC
CCGGCGAGCGAGCGAGCGAGAGCCACCACCTGCAACGCCACGAGCCCCCTCATAATTGGC
CGCTGCCAAACGCCAACGCCATGCCCGGCGCTCTGGTCCACCTCGTCGTCGTCCCCTGCA
CGTGCACTCGCTCACTCACCAACGATGCAGAGGTTTGGCCCCTCCGTACGTACGCGCAGG
GGTTTCACAGGGTCGTTAGCGGCAGCCGTGGGCTGGCGCCGTGTCGCGGAGCCCCGCGCC
CGTATCGGCGCCACGGCGCCGGGGCAAGATCGTGTCCCGCCCCGCGCCAACGCCGCTAAA
AACTAGTCCCCCCTTGCCGCCCCGGTGTCTCCCCCGTGGCCGGAAGCGTCCATGGCAACC
TCGGCCGTGCGCGCGCTTTACAGCATCGGCACGGCGTCGCCATCGGGACCGATCGGATCG
GGGAGCTGGAGCGGAGCGCGCGGAGGGCCAAGGATCCCAGCCCCGATCGCCCCCGGCCGG
AGCGCGCGCGCTTTACAGAGCGCACCTACGCGCCCGTGGCTCGACATTATACGATCCGTA
CCTGCGCGCGCACGTATCAGATATCACGGTCGTCCGTTGGGGAATAACGGGCCGGCACGG
TGACCTGGTTCTGTCTGTCCGGCCGACGAGGCTTCGCTTCACGCCCGCTCCAACCCCAAC
CCCGGCATGAGATCGTTATCATTTGTTAATCGGCTGCATTAATGGACGCTGATATTTTAC
TCATGGTCAGTACTCCTAGCCGCGTAAATTAGCGTGCGTGGTGGTCCAGGAACATCGTCC
GTCTCTGATTCACATCGAGTGGCCCCTGAGGACGGATGGGGGCGGAGTAGCCCCTACTAC
TACTTGACAATGCGAGCCCGTGCACGAGCTCCACCTCTCCGTCGGCCTGTACCTCGGATA
CTTTTAATGGGGGTACGAGGGCGGGCACGAATGCTCGAGCCGGTGTCGACGCACGCACCA
GCTGGTGATCGACTGTGGTCCAGGCACACACAGAATACGAGCCCGTACGTACAATAACAA
CACTTGGATATAGTTTCGATCCACTTTCCAGTGGAACGAGGCGGTGCTATGTTGGGCGTG
TGCTCCCTCGCGATGCAAAGCGCATTGTACCCTTGCGACGTTAAAAACTGGTTGACAACT
CGTCTTCTTGTACGCGCCCCACGCCGCTTTGGAGCCAAATTAATCCGTCGGTGTTAGAAA
TTGGCAAGCATGCATGACTTGCTACCAAGACGACGATCATAATAATAGTGGGGGCGAAGG
ACCACGGGCGATTTCTGATGGACTTTGGGCTCGGGATAAGAAGGCGCCACGGGATATGTC
GGTTGCTGGGCACGGAATTCGTAGCCCGTTTTGGTTAATGCGATGGTCCGTGTTCGTTAG
TACAAGCAGTGGTTGGAGCTAAGCTCGCTCGTACGTTCCTACTTACGTTGTTTTTCATCG
CGGCAACGCCAAGGGCTTACAGACAAGCCCGGTGTGCAGCGTTCAGTGCGACAGGGTAAT
AAGTCCAGATTCTGTCTGCTGAAAGGTAGGCGGGCTTTATTTAGTGTACAATATCTATAT
ACTAGTGCTAATCCCATGGCTATCCTAACAGTAATCCCATCCATGGCCCGATTAAATATC
GCACCAAGTGGCAGGAAATTTCGTGGCAAGTTTTTTGAGGGGACGGGATCAGATCGACTT
CCCGACCGTCCATGCTAGCTTGACATAATTACTGACACCAGCTCGGGACATAAGGAGAGC
CACCGGATAATAACTGATAAAGACGCGGACAGCTGATCGTCATCTTTTAAGGATGCATGT
TAACATCACACTATGGGGGGTCAAGATTGCCTCTACTACTAAAAAATAGCTACCGTCATG
GACCAATCAACCGCCGTGATAGGCCATGCAAATGGAAATTTGCACCCCGCTAAGATCTCA
TCGACCTCCTTGGCAGCATGATGGCCAGGTCAAGCTCAACATTCTGAGCTCGCTATGTTG
GGTGGCCGTGTCCGTACTCTGTAAAGGCGGCATTAAGTTTTGCTTGGACGGCATAAGGCG
GCATTAAGCTAACCCCGCGCCTCGGCCTTGCATGTAGAATCCCATCGAACGTCGCAAGGG
GAAGCGTCAAGGTTCAAGGGTCGCGTTTGTTACCTTGGGTAAAGGCTGGACACAAGAGTA
CAAGACCATTGCCATGGCAGGCATCGCGTCGGCGCGGACAGCGCCACCCTTTTCCAGAGC
CCAGCGTACGTCCGCGAGCGGTGTTCGTGCGGTGCGCGCGCGCACGGGCATGCATGCATG
CATGCACGGACGGGGAGGGTGGGCGCCAACCGCGGAGCGAGGCGGGCGGCTTTAACCTGC
TCCGTGTCCGGCGGTGGTCACGCCGGCGCATTAAAAGAGACAGGGCTCAAGTGACCGGCA
ACAAAGCTGTCCATGGCTCGCCCGGTCACGAGCAAAAGCGAGGACGCCGATCGTGTCATC
CAAGGCAGGCGCCAGCATTGTTCACGTACGACGGCACAACGGCCCTCACGGGGTACGTAC
GGGCGCGCCCACGGGCCACCCGCGCGTGTGCGGCCGTGCAACTTGCCCACCGGCGATGGC
AATGGCAAGCAAGCAAAGGGACAAAGCCTTCCTTTTGGGGCGGGCACGCCGTGGCACAAG
CCAAGGAAAGGAAAGGGACGGGCGTCTTCCTAATCCTCCCCCGATGTCCCTTTCCTCCTG
CTTAAGAAAAGCAGAGCGATTGCTTGCTGCTCTAATTAGTTACCGCCGGCCACTAGGCGG
GCGATGCATGCTCTTCAGATGTTCTTGCTTGGCTCGCGGACGACATGCAATGCAAGCAAA
TTGGATGAGTATGCTGAGCAATGAAGGAAAGCATGCACGCACGCACGTACCTGAACGGCT
GAACCCTCTGTAAAGCGTAGCTCCAACTCTTGGTGGTTGGTCAACCAATGCAAAGGGGGT
TAGCCGTTGTAAAGCATGATCCTGTTAAGTTTTCCCATGATCCATCCCCTACGGTTGGAT
GGATGGACGGATGGAGGATCGAAGTTTCGAAGGATCTGGTTAATAATCTTTTTGTGGATT
ACTATACTACTACTGACTGCAAAGGCATCACGCAGCTGCAACCACCCGGCGTGGTTGGTA
AATGAGCGAGATTCCACACAGCCAGGCCCTCTAACGGTATCCAATCCAGCACATGCACAC
AGGAAAAAGATACTCCTACTACTACTGTATCCGTGGACGGAGGGGAACACAATGGTTGGA
TTGGGTCCTTGGATTGGAAGAACAGCGTTAAATTTCCGGGACGCTGTTTTCTTTCTCTGC
AATGCAAACAGAGGGTACATCATGCACGTGAACGCGGCTTAATTTACGTGCGTGTCCATG
CACACGAACATGGCCCAGTTTACTTTTCTCACTTAGTAGCAGTAACATACAAGTGTTGTT
GTTTAATCGATCGATCCCTCCTTCGAGGGGAAAAGAAGAAAAGATGAGATTAACTGCCGA
CGCCGGCGAGGTGAGGTCAGGTCACGACCTCGCCACCGTCCGCGCAAGGCGCTGGACCTT
GGCGGCGATCTCTGGAGGCACTCGCACGGCCGATCGGGGCGGCTCCTTGCACCGCCGGAG
GTCCAGCCCCAGCGCGTCCGACACGTCCTCCGAGCTCCATCCGGCTCGCCGGAGCGAGTC
CGAGCACCGGTCCGTCTTCAGCAGCAGTGTGTCGAGCACGGCCTCCGCGTCGGCAGCTGG
CGGGGCGTCCTCGCCGTCGAACATCCCGGACGCGGCCACCTCGACCATCTCGTCCACCTC
CCTGTCCCTCCAGCCACCTTTCTTGAGCACCGATCCGAGCTTGTCCAGGTAGTTGTCCAC
CCAACGCGGCGTCGACCTCCGGGGTGGCGAGCAGCAGCCTGACGAGGATGTGGACGCGGT
GGAGGCTTCGGAGGACGACGAGTCGCGGCGGCGCCGGTCCGAGGCCGCGTCGCTCCAGAA
CTCGATCCAGCGCGGGGCCTGGCCGCCGCAGGCGGCGTCCAGGCTGCGGCGCGTGCACGG
CGTGCTCGTGCCCGAGGAGGGCATCGCCGCGAACTGGGATGAGATGTCCATCGGCTGGAA
AGACGACTCGCGGGTGAAGAAGTGGACGACGTCGAGGCCGCAGCAGAGGACGCGGTCGTC
GGTGACGAAGAACACGGGGTTGCCGGCGAGGGAGGGGCTGCAGGGCAGATAGCAGCGGTC
GAAGAGGGGAACGAGCAGCGGCGCGCGCCGTATGGCGGAGCGAGCGAGCCGCCTCGAGCG
CTCGGGGTCGGCCGGCCTCTTCCCCCAGCACCGAGGCCACAGCGCGCCCCTCGCGATTTG
GAGCGACGCCGCGGCGACTGGCAGGTCGAACGCAGCGCGGAGCCCGGCGCGGGAGCGCCA
GTCCGGGAACCCCGGGCCGGACGGCAGCCCGAGGGCCAGAACGGCGCGGAGGTCGGGCGG
GAAGGTGAACCCCATCTCGGCCTCGGCGCGGGCGAGCTCCGTCTCCGAGAGCCCGGGCAG
GATGGCCACCCCGGACGCCCGGAGGTGCGAGAGCACGGACGACGCCACGCCCTGGAAGGA
GTAGAGGCCGTGGCGCGGGGACGCGGACGCCGAGGAAGGGTCGGCCGCAGCGCGCGTGGA
CAGGCGACGCAGGCCGGCCGCGTGTGCCGCCGGGGCCATGCCCGCCATCCGGTGCTCCAC
ATCCACCATCGCGACGGCCCGAACCTCCCCGGCGACGGCGAACGGCGGATGCTTTCCCCC
GTGCGTTTTGGCGTTTGGAAGCGGGGAGCTCAGCTTGGCAAGGCAGAGAGGAAACGGCTG
CGAGTGAAGGAGACGGACGGACACGGTGGTGACGGAGTAGGCTATATAGCGGGAAGGGAA
GCGGGCCGTGGCCGTGGGGGTGTGTGGAGGGTGGAGGACAAGCCTGGGCCCAGCGGCCAT
GGGCCGGGGCCCCACTTTGGAGATCTGAGGTCCTGCCGCTGGGTGTTGCGTGGGGCCGCC
CACAGCGATGGCTCCAGCGTGCGGGGCGCTACAAGGCAGACCAGAAAAAAATGAGCAAGA
GGAGACGCTGATCGGTGTCAGGCAAGCAGCCTACACTGTGATCTAGTAGTACTGGTGGTC
TGTGTTAGCGTTCTTGTTTACTTTTTTACGGCCAGATTTACCGGTTAACGAGATTGGACA
GACCATGCGACTGGATCGTTTGCTCTGTTTCTTTTGCGAACAAAACAGGAGCTCTGCTAT
TTTAGTGGTGCACGCTGAGTGTTTAACAAAAACTACCACAGTGTTCCTAGAACTATCATT
TATCAAAATGTCCCACAGAACTAACATTTTGTCTCTGTTTTTTTTTTCTTCCTAAAAACT
ATCGCTTTTGTTAAGGTAATGCCTCGGGCATTTGAATCTGGATTATGACAGGGGTGCGGT
ACCCAGGTAAGGGTTGTTCAATTTCTCAAAGAAGAAGATTGATGTATCAAATAGCGAAGG
ACGTGTTTGGTTGCCTCCCGTGAATGGTGTGTGTATTGCATATGTTGTTGAGTGGAGCCT
GGTTGAAGGAAATCGAAAGAAAAAACAACATATGTATCTCGTTTGGTTGTCCGCATCGAG
GTATGTCTCGATGTTTTTTTATAACATGAGGCTTACTAACTAATAGATTGAGGTTGAATG
TAACGACTAAGATGCGATCCTATCTTTATTTTGGCGTGAGAGCCTCGACACGGATAGAAG
TGCATCTCGTCGTTTNNNNNNNNNNNNNNNNGTTACAAGTACATGTACATAATAGATCAG
TATATGGAATTGACTTACACTCGACAAAAGCTACATCAGAGTCACATTAATACAACGACA
TAATTAGCCATCATGAAGAAGAGCATGGTCCGACTACGGACGAAAAACAAACGATGAAAG
AACGACGTTCATCCTTGCTATCCCAGGTTGCCGGCCTCTAACCCATCCTAGATCGATGAT
GATGAAGAAAAAGAAACTCTAAATAG