morexGenes - Barley RNA-seq Database

Contig contig_47335

Source Contig contig_47335

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_47335 (7494 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_47335

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63154	1	293 bp	MLOC_63154.1	Available	Available	None
MLOC_63156	3	2308 bp	MLOC_63156.2	Available	Available	LOC_Os02g39730.2, FRAME:+2, EVALUE:3e-65, 13102.m12417 protein expressed protein
MLOC_63155	3	4837 bp	MLOC_63155.1	Available	Available	LOC_Os02g39740.1, FRAME:+2, EVALUE:3e-162, 13102.m04413 protein psaB translation factor, putative, expressed

CDS Structure of MLOC_63154

CDS Structure of MLOC_63156

CDS Structure of MLOC_63155

Contig Sequence (7494 bp)

>contig_47335 7494 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCTCCCCCCCAAGCTCACGTGCCAGCCAGACAGCGAGCGTGTGTCCGA
CAGCACCATGACGCCGCAGCCGGCGAGGAGCGACGCCTCGTCGACACAAAGGGTGCGCGA
CATGTCCTGAACGGACAGAGTGCGGCGGCGCTCACGGCTGCTGCTTCCCGCTGCACTGCC
GTGACTGGCTATTGCTCCGACTGCGGAAGAGGGCGGCTAGGGTTTGGTAGAGGCGTACGA
CGGAGTTGGCTGTGGGGCGGCGAGGGGAGGGAAGGGGATTGGGGCGGGAGTGGGTGAATG
CGGGTGCACCGCACGACTATAAAATGTATCCCAAATCCTCGCATGGAAAACCGTGCAGTG
TGAAAATGCCGTGACCGCGATGTGACTGCACATGCGATGTGACTACACATGCATAGGGGG
ATATGCCCGACCAATTGTGAGAGCGCCACATGACAAGGTGTGTCCCACTCGTCAGTAACA
ACGACGACTAACAGTTAACTCCATTGACCAACGACAAATCCCCGTTTTGGCATTGGTGAT
GGTGGGTGGCGCGGTGGAGGAGAAAAGTGAGAAAAAAAAGTTGCCTTGGGCAAAACTGGG
GAGGGCTAAGCAACGAGGGACACAGAAATAGAAATTCCTAACAAAAAATAAGCAGTAAAC
TTTACCACGAGAGCAACATCGTATACACAATTTATATCTCAGCTACCAAAATTAACAGTG
GCACCAACTGCAAAAGAAACTTCAAGGGTGCTGAGCTAAAATCGTGGCATATATATGATC
GGTGGATCAAACTACTACTAAGCTGCTAAACAGAATCATGGGAAATTATTTAGTACTCCC
TTCGTAAACTAATATAAGAGCGTTTNNNTCACTATTTTAGTTATCTAAACACTTTTATAT
TAGTTTAGAGAGGGGGTACAATTTTTCAGAAGGGGAGACGTTGAATGTCGAGTACATGGA
AAAGAATATAAATACAATGTTTGATTCTCAGTCCAGGAAAAATAGCCGAGTAGATCATTT
CACGTGCAAATCTAAGCGTTATTGTACATCCAGCTTGGATTAGATATGAAAATTGGTTGG
ATCCAGCAAGTAAGATCTGGAGCTCTCCTGGTCGACGGAAGTTACAAAATTCTTCCAAGG
GTGACAGTTATTGCCCAAATAAACTAGATAAAGCCGCCAGATATCCTGCTAGCTGCAGAA
GTGTACAAACACAAGATCACGTATTAGTAGGGTAGAACCATTATTTAACGTTCTGGTAAG
TAATTTTGGTGTTTATCGGTGGATGACACATAAGTTAGTTGCAGCATTTCTCTTGAAGAA
AACTAGATTTTTTGGTTATTGAATATTACAGTCTATTAATTAAGATGAATTTTCTCTTTA
TGCTCAACTTATGTACCTGTCCCAAGATACCCTTTCCTGTCCGACCTTCCAATACCAATG
CAGCAGTCAATCCTATCACCGCCAATGCGCCGTTAATAGCTTCTGCTTGACGACGTTTCT
GCAAAACAGATAACAATGATGTGGTAAAAGAACTAAAAGAAACAAGTAATAGCATATCAA
ACATAAGATCACGATAAGACACTATATAAATGAAAAAAGAAAATCATACATGCAGCACTG
GAGCGTTGCAATTTGCAAGCCTAATTGGGGTCCATGTGAATGTCATTACAATCCACAGTT
ACCTATTTACTAGTTTAGCTTCCTCCATTTTGTGACACACAGTCACATTTTGGTTGACAG
ATGAAGTAGACATGAGGAAAGCCATGTTTTGATTCAAGTTGTTTTTTTCCGACAAATGGT
GGGTTTTATTGACTCAAAATGAAGCATAAAGGAGATACAAACATAATGAGGACACACCCA
ACCTCTGCATAACTAGGATGTACACACACAAAGAACCACGCAGCCAAAGAGCAAAGTCAT
ACAAGACCGAAGCTATGCCTAGACGGAGGAAAAGGAAAAGAAAAACTCCAAAGCGATGAA
AACAGCGATTGACGAATTACAACAACGACCATATTCACACCAAAATCTCTTGACAAAGGA
AACATATTCAAGTTGCTAAGAAATATGTTTGTTAGTTTGCATCCCCTATAGAGGGATTCC
TCTCAGGATTTTGGGAGATATTCGTTTCCATCATTTAACAAATTTTTGATCTGAATAGAT
TATTGCACAAAACTTCTGTTTGTACGGCTAGATAATATGACGGAATACAACTTATGACAT
GTGGACTGCACTATCCTAGTTTTCTTTTACCAATATCAACTGAAATAATTTCCCATTTCA
TCATCGCTTATATTCGTCTTAGAAAATATATTTATTCCACAATCATGAATATCTATATTC
CTTCGGAGGAGAGATTAATTAGTGGAATTACAAGACAGAAATAATGAACCTTCAGTTTAT
CTCTGGCACGAATTTCTTGCATTTGTTTCACTGCTAAGCGCTTAGCTTCCAGTGGATCAA
CCATTATCACTTTCTGACCTGAACTTCCTTTGCCTTGTGGTGCCTGGTTCATTTGATGAG
TTCAGCACCTCTTAGCTACCACACAATAATATCAAGAGTAATACAGCTACAACTATAATA
AAAAGAAGCTAATTCTTTTTGTCAGGATCCCTGTCAGAGTGTTGCAGAATTTCTAGAGCA
AGAAGGCCTCCTGCTTGGGAATTAGGACGGAGGATCATGCTACAATTTATATAGCAGTTG
ATACCAAAACCAGAATATCATATTCGAACAAATTCAAAAGTATATAATAATGCATTTAGT
TAACTATTATCATTTCCATTTTCTATACTATTAATTGACATTGTATAATCTACCAAACTC
AGAACACACTCAAACCCCAAAAATAAATGGCCTACAAAGAAAAGCATACATCTGCACTAG
CAAGAGCCAGGAAGCTCGTCACATGGCTTCTTCCATACAATGTATGTCCGGATTGCTTGT
ATTGGATGGTCCATCTACGAATAAGGCGTATAACTGACACATCAGCAAATGGCACCGATT
CTAAATTTAAACACATAAAGAAAAATAAGTCATTATTATAACACTGATACAGTTAAGTAA
TATACACCCACCTTCTCCACACGGATTCATGTTGAAACATAAACTCTCACCAAATCAAAA
CTTTCGGATGGTTAGTGCTTGGCTGAAGCTAGCGTTCTTAATGAAGACAAACTGTTAAAG
AAAGGATGAGAAAGGAATACTGAATGATTGTTTCTAGGTCCAACGCTTCCGATGTATATT
TGGTTTGCCACCCAGTGTGTTTCTAACTTGAATTGCAAACCGAATAGTCTAAGGTATGAA
TACAACATGCTATACAGTTTATTCCATGGTCAGAAGAGGAAAGTGGCTGCCAGCATATCA
CTCTACAATATTGATAAATTATTTTGATATTACTGAAAATTATTTTGAGCTTGCAGCTTA
TCTCGGACAGCAAGAGCATTCGCCAAGTAAATACTACTGTAGCAGGCAATCGTACCAAAC
ATTCGCCAAAATGAAGAGCAGTATAAAAAATCGTCTGAAACGCAAGCAGAGCACTTGGAA
GATACTACTACAGACTACAGAGAACCATCACAAAACGATTTTCTTGTGGGCTAACCACCG
CAACAGCCACAACCTCCATAACTGACTAGGAAAGTGGACGTCGGCGTTAATAAAGCAGCT
CACTCCGGCCTTCAGTGAAGCACGAAGCGGGATGGAACATACTGCGCAATCGGCCATGAA
CTCGAAGCAGAGCAAGAGTGAATCGATGGGATGGACCACACAGAGGGCGAGGGGGAAGAG
CATACCCGAACGTGGAGGGAGCCGAGCGCACATGCCCGACCGAGAGCAACGGAGAAGAGG
AAGCAGACGCCCGGTGGAGCAGCCGGGGAGAGGGAGAGGGAGAGCACGCCATTCTCGCTG
CCCGCGACCGCCTCTCCTGCGCTGCGCTCCTTTTTTTATGGACTCCAGCAGCCGTCCAAC
TCCACCCTCTAGTTTTTCTTCTCCCCTTCTACTCCTGCGCGTCGTGGTGGTGGTTATCCG
AGTCCACATAGTAGGCTTTTCTTTCTTTGGTTGGTCCTACGTGGGCTTAGGCCGGCCCAT
CACCGAGTCGGCACGAGCGGGATTTGCTTCTCCATGTGTGAACGGAACTCACTCAACAAC
TGGCGCCGCGACGGACACCACCGTCCACCAACGTTAGCTTTTGTGTGTGGCCGTGGAGGG
GCGCGCGCCATGACGACCGCCACTGCCATCGTCGCCGGCCACGGCATCGCCTTCCGCCGG
AGCCTCCACCTTCCCAACCCGCCGGGGAAGCCGTCCTTCTCCGTCGCCCGGCCCCACGCG
CACTACCGCCTCATAGTTCCTGCCACGCCGTCGCCGAGGCCCTGCCGGTCCATCTCCTCC
GAGAGCCCCACGGCCGCTGCGGCGGACACCGCGGCGGACGAGGAGGAGGAGCCAGCCGCG
ACGAGCGAGGAGGATGATGTGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGACGCG
GACGCAGAGGGGATCCGGGAGTGGGAGGTGGACTTCTGCTCGCGGCCCATCCTGGACGCC
AGGGGCAAGAAAGTGTGGGAGCTGGTGGTGTGCGACGCCACGCTGTCCCTGCAGTTCACC
CGCTTCTTCCCCAACACCTCCATCAACAGCGTCACGCTCCGCGACGCGCTCGCCTCCGTC
GCCTCCTCCCTCGGCGTGCCGCTCCCGGACCGCGCCCGTTTCTTCCGCTCGCAGATGCAG
ACCATCATCTCCCGCGCCTGCAACGAGCTCGGGGTCAAGGCCGTCCCCAGCCGCCGCTGC
GTCTCCCTGCTGCTGTGGCTCGAGGAGAGGTACGAGACCGTCTACAGCCGCCACCCCGGC
TTCCAGAAGGGCACCAAGCCGCTGCTCACGCTCGACAACCCATTTGCCACAAACCTGCCG
GACAACCTCTTCGGCGACAAGTGGGCATTCGTGCAGCTCCCCTTCGACGGTCAGTGCCGG
ATACTACCACATTTGAACATATCTGCGAAATTGTTGCCTTCTGATTGTGTTCAACTTCAA
GATGGATGTTGGCCTGTTGTTCAGATGTGAGGGAGGAGGTGGAGTTGCTGGAGAGGAGGT
ACGCGTTCGGGGCGGGGCTCGATTTGGACCTTCTGGGGTTTGAGCTCGATGAAACCACGC
TAGTCCCTGGAGTTGCCGTGGAATCTTCGCGCGCCAAGCCTCTGGCCGGTAAGTTTCTAT
ACTCTACTCCTGAATCCTGATCCTGATTACTGAAACAAAACTACTACTCATACTACTACA
ACTTGCCGAGATAATTGGTTCGATGTAAGCGTGTGCAAAATTCAGTTGTAAGGTAGCACA
TGCTAAGTTCAGACTGTAGTTACGCAACGAAATTTTGGTCACAGGTGATGTACTGCTGAT
ACATAGGATACGTAGTGTATCAGGTTGTAAGAATTGTAGCTCAGGCAATGTAGGATTGTG
TGGTAAATGCTGTTTATTCCATCGGATAATAATTTGATCTCACAGTCATTTGTATGTGGA
CAAAGGTATTACACACACACACAAAACAACAACGAAAGAAAATGTTTTCCAGCCTCTGCA
TCATGGGATCAGATGCACACTGCCATACAAGTACTAGTCTAACTTCTTATCCAGCATATA
TATATATATAGGATTGATATGTACTCCATCCACATACGGAGCAAAATGAGTAAATCTACA
CTGTAAAGTATGTCTATATACATCCGTACGTAGTTCACTAATGAAACCTTCTTAAAGACT
TATATTTAGGAACGGAGGGAGTATTTGTATAGTAGTCCTAGGTAAATCTATGTGTCAGTT
GTTTACATGCTTGTCTTTAGGATAAGTGTAGCTTGTGTGTTCAATAAATAACCAAGCAGA
CAACTGCCACTTTGGCAAAAGATTTAGAATGAGAGATCTACAGTGCATCGAGACTCAAAA
GTTTTTTTTTTTGCATTCTCTACAACAAAGAATGAAGCAATGCATCTGCTTCCTCTCCTT
CCTTCATATTATGAGAGACGCGACCATGTGAAATAAAAAATCATCTGTATGCGTACAATT
GATCAACATTAGCTAAACGTCAGTCAATTGACTTTAGCTTTTGGGTCAGTCGATTTTGAG
ATGGCCGAAGAAATTCGCCGGAGTGAGGCTGGAGGAGGGAGGAGATGGTGGAGGCAAGAT
AGGGGTGTGCAACTTCGCCGGAGAAAAACCCCGGACGTAGGCGGGGCTAGAGGGATGGTC
AGGGGCGGCAGGAAGACCAGCTGTGGGAGGCGGTTCCGAGGCGGCGATGCTGCGCGGGAG
CGCCGCCGGCCGGAGGTGATGGTCGCAGGCGGTTCAGCCGGCGGACGATGCGGCGGTCTG
GGGAAGAAGAAGAAGAGCTGGAGGAAGAAGAAAGGCCAGGCGTCGTTGGATGTGCATCCG
ACGTTCCAAAACAGTCGACTAACCCAAATTCAAAAACCAGGCGACTTACATCTAGCCATT
CCCCAATTGATCACAGTTTCCATTCTCCTGTATACAAATGAGTGGAACTATAAGGTCAGC
AAATTAATTTGGGGTGAGAACTAGGAAGGGATAGTTTGAACTTTCAAGAGTCTGATAACA
TTCAGCGAAATGCTTTGGGTTAGTCGACTGGCTGAAGCCCCTGCACAGTGTTCACAACAA
ATATGCACAATACCAGTTATAGAAACAAACACAACAAATATGCAAGCATAGCATCAGATC
AAAGATTTTAAGCAATGTTCACATGTTGCATGAGATGAATATTCTAATCTCGATAGTCAA
CTGGCTGAAGCCCCTGCACAACGTTCCTGTTTCTTTATTGGGCCTATTCTCTTGTAAGAT
GCATGTCAACCAGCTCTGAGATATTTGTTTCTTCAATTCCTGCAGCTTGGATGAATGGCT
TGGAGATCTGTTCTATGGAGGTTGACACCGGCAGAGCGAACCTGGTCCTGTCAGCCGGGG
TGTCGACAAGATACGTCTACGCCGGGTACCAGAAGAGCCCCGCGACGACGCAGGAGGCAG
AAGCGTGGGAGGCGGCGAAGAAGGCCTGCGGCGGCCTGCACTTCCTGGCCATCCAAGAGA
ACCTGAACTCCGATAGTTGCGTGGGTTTCTGGCTCCTGCTGGACCTGCCGCCACCGCCTG
TATGATCTGGCTAGCGTGTGTTTTGTGACTCCTATCGAAATCACTGTAGTATGTGTAGTG
CCAACATCAGATTTTGCAATACAAGGTCATTTCATTTTTGCTCCTTGATTACTGCACAAA
GGCGTACTTCATGGAAAAAAAAAAGGAAAAATTCATACTCTAAGTTTGAGTAGGTAGAGC
AGCCAAGAGCGCTCCCCTCTCGTAGTAGGAAAAACCTTATACTCCCTTCGTTCCTAAATA
TAAATCTTTTAAAAGGTTTCCCTAGAGGACTACATACGGATGTAAATGGATATACTTTAA
AGTATAGATTCATTNNNNNTGCTCCGTATGTAGCCCTCTAGTGAAATCTCTAAA