morexGenes - Barley RNA-seq Database

Contig contig_47325
Source Contig contig_47325
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47325 (8731 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_47325

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63149	1	1424 bp	MLOC_63149.1	Available	Available	LOC_Os05g13390.1, FRAME:-1, EVALUE:5e-103, 13105.m01404 protein expressed protein
MLOC_63148	4	2605 bp	AK369931	Available	Available	None
CDS Structure of MLOC_63149

CDS Structure of MLOC_63148

Contig Sequence (8731 bp)

>contig_47325 8731 assembly3_WGSMorex_rbca.fasta
TCTCTCTCTCTCTCTCTCTCGTTTGTACTAAAAGAAGACATAACATCAATTTTGAATCGA
TAATTTCTCGTTCTTTCGAGTCATACGCCATGCTATAAATGGAAGGTACGTCGTGGATTT
AGGTGTGGGAATCGACAAACGAAAAACAAGGCAAAAAACTCGCAACCTATGAAAGAGAGA
GCCACAAAACATGCACGAGAGTTTCTCTCTAGTGAACCTTGGAGTAGCCTCGTACCCACC
AAGAGGCCTTCGAGCCAAAAAGGGTATATTTAAGCTCGGATTCCCTAGAGCCTTTGGGAT
ATCAAAACCTTCTAGAGTGACCCCCCAGATGCCTTCAATTGAAAATATAACATTTATGTT
TTCACAAAGGGTATATTTAAGTTACGATTTCTATTCGCTCCCCACCATTGTTGAACACCT
TCAAAGCTCGAGATTTTCCTCCCTAGACATCCATTCACCTATACTTTTAGGGAGAGGGAC
AAGAGGAGGTTCAGATCCAAGACTCCAACAAAGCAAAACTCAAGTAGACTCTCACAAGAT
CATTTGTGAATCTTGTTACTCTCGGGTTTGTGGGAAACTCTACATGGCTGGTTGTTACCC
GAGGGCTTCGAGGTTGTGTAGTTGTACCACGGTTTTGTTTTTTGAGGGATTGGAATTTGC
CCCAAGATCTACCCGTAGTGAGATGGTGCTTGGAAATTGGTTGTCATGGGAGTATTTGTT
GTTCTCAACTTCTCCAAGTAAGGTTAGCACTACCGCAAGAGTTTCTGATTATGTATCACC
TACTGCATCTATGGTCATATCGAACCCTAGCTTTACTTGTTTTTATCATTTGCTTGCGAG
TTTGCATCATATACCTTTCTAGCTAGCTTGTTGTAACACGTCATATATGTTGTAGCACTT
AGTTGTATTCGTAGAGAACTTACAATTCTGCACATGCCTCTAAAATCAACTCAGATAAGA
CAAAAACGAGTAGTCTTCGATTCACTCCTTCCCCTCTAGTCGACATACTGCGCCTCTTGA
TCCTTCAATAGTCAAACAATATGACGGCGGTACATAGAATGAATGAAAGAGTTGTTTCCT
CGGGTGGTCCTGCAACCTTTTAAAACACCAATGTCCTTTATTAAACGGACAAAATAACAG
GAATGCCAACACGACTGGGCGGTGAAAGAAGCCACACTGGACGACCAATTAATCCATAAA
AATGCATATCTAGACCGACTATGTGCCTCTGCATTAGAGGCTCTATTCTCATGAATAAAA
ACTACACAAGCTAACCTTCGGCTAACAAACTTCTCCTCTATGTGTGGACACCAAGGTTAG
CATGCATTTTCGTTCCAGTTTCTTTAATCTTTTAGCATGACCGTTGCAGTTACTTGCAAT
TCAGGCATAGGATATATTAAGATCTCCGGCCAAAGCTAAGTTTACAGGATAACTCATTGC
CTCACGAGACCTTCGAGTGAGAGGCGTCCAGGTAAACCACGGCCGACGAGCCCAGTTACT
TTCCCATGCCCGTTCCTCGTCGTCGTCGCAACCGCATCATAGCCATCACTCTTCTTGACG
ATGGTGTCTATGATGATTTCCCAGTATCCAGCTGTGGTGGAGTCTAGCATGACGTTAAAT
GTTATAACACTGTTTATCCGTGAATAAACCGGAGACGTTTAATGCCAGCGAAGAAAAAAG
GCAGATAAAACGGCTTTCCTCCATTGGTCAGGGTCAAAAGCATCTTTACACAGATTTGAG
GCAGGAACGGTATATTACTATCCACCTACCGGATTCGAGCCTCCAATTTGGTTGCTTGAA
GCCATTTCACAGCTCGGAGAAGCACAATTTGAAAAGCAACCGAAGCTGACCAAAGGCCAT
AAATAAAACCCCAAACCCATCTCCACCGAGAGAGAGAGAAAGCGACCAAAAATAATCGTA
AACATTTCCGAGTTCCGCTCCCCGATGCCGCCCACCTCCCTCCTCCTCCTCCTCCTCCTG
CTCGCCGGCGGCGCCGCGGCGGAGCCCCCGGCCCCGGCGCCCCCGGCGGCGAGGAACGAG
ACCATCTACGACATCCTCCCGCTCTTCGGCCTCCCCGCGGGCGTCTTCCCGGCCAACGTC
ACCGCCTTCTCGCTCGCCGACAACGGCAGCCTCGCCGTCGACCTCGCCGGGCCCTGCTAC
GTGCACTTCGAGTACCTCACCTACTTCGAGCCCCGCGTCACGGGCGTGCTCCGCTACGGC
TCCCTCACCGAGCTCCAGGGCGTGCAGGTCCGCCGCTTCCTCGTCTGGTTCACCGTCGTC
CGCGTCAAGGTCGACCTGCCCCCGCCCCCGCGCTTCGTCTACCTCGACATCGGCTGGATC
ACCCGCAAGCTCCCCGCCGCCGACTTCCAGTCCCTCCACCCCTGCGAGGACTCCAAGAGG
CGCGGGTGCCGCCTCTCCTCCGCGCTCGCCGCCGCCGCCGCTTGGTTCCAGGTCTGATGC
ACTCCGCCCCCCCTGCTCCGTCGAGATGTTTGATTGTGTTCGACGGGTCGCTGATTTCGG
TTTACTCGATACTCTACTAGCTTTGTTGGTCAATTTAGTTCCGGTTATTAGATCGTGAAT
TAAGCTGTCGATTCATCTAGGTAGCACTGTTAGTTTCGTCAGCGATTTGTGTTCATTCTA
CAGGCTTACACTCCGGTGGTAGCTGGCTTTGACTAACTGTACATTTCTGAGGTATTGTGT
ATTGCTGAAGGAAAACAAACGATAGTAGATGGAAAACGATAGTAGATGGGATCCTGTGCA
AGTTTGGTTGCAGATTAGCATGTCTGGTTGCATCCTGTGCAAGTTTTCTAGACTGGTTGT
TGGTTCTGAGTAACTGTACATGTCTAGAGGCATGGTACTCCCGTGTGGTAGTGGGATCTG
ATTAACTGTACATTTCTAGGGGCTTACCTCGTGTGATACTTGGTTCTGAGTAACTGTGCA
TTTCTGTGCTGATTGGGAAACAACCTGATAACATAATTAGTGGCAGATTGACATGTGTGT
TTGCGTAAATTGACCTATCAGTTCATCGTAGCACTCTTAGTTTTGCGGGCGTCTTGTGTT
CTTTCTATAGGCTCACTCTAGTGGTAGTTGGCTTTGACTAACCGTGCATTTCTGAGGCAC
TGTGTATTGCTGTTCGGCAAACAAGCTGATAGTTGCCTCATGTGTTCAAGTTTTACATGG
AAAACGAAAGATGGGACATATTTAATTGCAGATTAGCATATGTGTTTGCATCCTGTGCGA
CTTTTCTGGATATCCTATATCGAGAGCCGCGGTATACATTTACTTGAAAAGGGGAAAAAC
AATACCTTAATACAGAACCAGTAAGCAAAGTTTGGTTGCTGCTATAGATGGCGATGAAGT
GCAATAAGCAGGTTGGCATTCATGTCAGTCATTGGTTTGTGGCGTTGTGCTATTCTTGAA
CTGTGTATATCCTCAGTGACGTTACTGGTTAATATTACTAGAATTAGCTTTGTACCATCT
CAAAAGAAGTGTATAATTAGGAAAAGAAAAATCAGATACGATGATAGTTTGTAGGGCCCA
GGGATACATGGCAGTGAACATTTCCAACTAGATGATCTTTGTGATGATATAGATGATTAC
TTTGTTCTTTACTTACCCTCTGGCAAAAATTAAATTTGGGGTTGGTCAGTGTATGCACTT
ATCTTTGACTGGATATATCATTTGATTGTTAGGACGAAGGATCCAAGTGGCGTGAAAATA
GCTACACGTCTTGTCCAGATCATTTCCTGAATTTGACTTGTGGGCACTAATTTATTTCGA
AAATATTGCACATGGCTTGTAGATAATGTGGTTGGTTGTACTTGTACATCAACGATGTAA
TCAGAAATATGTCTTTATCATGGTGCCAGAGTTTCAATGTTGTAGCTGTCTACTGCATTA
ACTTCTTGTTTCTAAATATTGTTATAAACTTTGCAGGACTTCTTTGCCCAGTTTTAGGGG
ATGCAGAAGGTCTAATTTTGTGGCATCATCACACGAGGTGAATGCAGAACTATACTCTAT
ATTCCCGTACCTTTTGTTACAACCATGTATATGCTCCAACCATCCCTGTTCATACATGTT
GAGTTCCGTGGATCGTCTTCTGTGAGGCACACAGAGTTTGAGGGCATGCATGTGATAATG
GATCTATTCTATTGCTATGACTGAAGAAACATTTTAAAATTGAATAAAAATATATTTGAG
AGGCATATGTTTTGTTTTTGCTGTTTCAAACTAGAGAGAACCTTGCAGATTTGCTGGACT
CTGTTTACTCTTGGAAGTCCCCTCGTTATGCATTCTTGATCACTGTTGAACATTGATGAT
AGCCCTATATAGAGCCTTACATGTTCAGTTTGGGCAACATGCCTTCTGATGCTGTTACCT
GAAATAACAAGTGTAGCAGTGGCCATCTCCTCTTCTGGACAAATAACGAGTATGGATATG
ATATACTCCCTCTGTACCGAAATACTTGTAGTTGGGGGAACTTGTGCTAGTTTCCCCCAG
CTACAAGTATTTCGGTACAGAGGTAGTATTGTCCAAAGCTTGGTCAGAACGGATCATAAA
CTAAACGAATCTTGCCTTGTTGCTGGGGACATATTTCAGACCATCACCTAAATGTTAGGC
ATTGAACACAGCAAGAGTATACAGAGTAGCTATAATGGCCCAAGGCCACACCGACAAATT
TGGAAAATACCTCTGGAACAGAACAATAATCTGGCAATGGCCCAGGAGCGTTGTTGGTTG
TTGGCTTTTTACACCCTCATGTTAATGCTTTACACTTGTACAGTTACAGAAGATTTTTTA
CATTGTTCTTATTATATGCACCTTTTAATGTTTCAGTTAATTTCTGGCCGGTTGGACTGA
TTTACGCTGCCTGCTTTCTGTAGCTTACAGCCTTCCGCGCCCTCAAGGAATTGAAGCACC
ACACTCCCATTTGTTGATTGTTACACACGCACGGTGTATGTCTCTACGAGTACTCGACGC
CGCTGTCTGAGCTCTACCATTGTTTGAGAGGCAGACGATCTTATGAAAGATTTGTATTGG
TTATGTTAGTCCAAACTGATGATGCTGTGTGCTCCATGCTTCGATACAATAACACTTTCT
CAAGTGGTCTATATCATCATTTTGTTGGAACTATTGAAGTCTCCACTCAAGTTTCCCCTT
TGCGTGTCGGTAGCAGTGACCACTCTGCTGTGCAATATGCCAATATGCACGAGTTTCCCC
TTTGTGTGTCAGCAACAACGACTACTTTGCTGCGCAATACGCGAATCTGTCTGTGTAAAA
GTCGAGAACTAGAGCTACACCATCAGTCCTGATGTTCTCAGCAGGAATACAATTTTGTGT
TGAGAAACTAAAAACAGAACTACACACTATACGCTTTCAGTTTCAGCTAAACCTTTCTGC
CATGACAAACCATCAGTGATGCGGATAACCTCGAACCTATTTTACATTATCAGATTGTTA
GGATAACGATTGTTCTAGTTTCGATGATTAGTGATGTTATATGTTGAACTCAGCTCGCGG
AGAAGACAACACGACTCGTACCACTAGCGCCCAGATACAAAATTATGCTTCAGCAAGACC
TTATTCTCCCCGAGTTGCTCTTTGCATTCACATAATATTGTCGATAAAATAGCAATTCAA
AGAGGAGTACAAAGAGCATTCGACTATTCACGGCGAGTCATGTACGTTGTGGCCTTCGTT
CGGGTTTTGCAGAATTATGTCGAACTGGGTGGGCGGTAGTCCCTGAATACGGAGGAAGAG
CCACCGGATGCAGCAGGGGAAGGTGACGACGCAACAAAGTTGCTTGCTGGTAGTGATGCC
GAGGGGTGGTGTCCTTGATGCCCGGTACCTGCGAAGCGAGACGGGCTTACTGTAGAGAAA
GGTGCTGCTGGACTTCTTGGAGTGTTGCCCTGTAAGAAAACAAAGTGGTTTTCAGCTCAA
CATGGACAATAGCACACAGTTCGATCGCAGCGATTATCATATTCTACTAGAAATACTAAC
TTCCAGCAAAATGATAAATACAAAAAGGAAATCCAGAACATGTAACAACATTCTCAAGCC
TGGGTACTTTAAAATATAAATTCATTAAAGCATCCAATAGCAAAAAGGAAATCCAGAACA
TGTAACAATATTGCTGAAATGAAATTACTAATGTAGACTCATTTTTGCTAGTAACTTGCG
TTGATTCATTGAAGCATCCAATAGCAAAATATAGATTTGGCCTCGAAGTATGGCCATTGC
AAAAACTTACAGGGTTGTGGTTGCGAGAACCAAATGGAGACCTAGCAAAGGAGGCTGTTG
AAGGAGAAATACTGTGGACATGATGCAAGGGACGTCCAGGAGTGCCCTGGTTGGAACCAG
CATCTGACTCCCCAGCAAACTCGCTGAAATTGACATCAACGGTCATTCTGGGCACCTGTC
TGGGAACACTTCCATCAGCTGTGTTTTCTGGCGGCTGAGGCATGGCAGCACGCAGCGAAG
CCTGCATGCTGCGTGTTCTGATTTCTTCTTCGGCATTTAAAATCTGTTCAAACAGCCAAA
ATTAATCTTACTTAGTACACTGACTAGTGACCACCACGGATAGTTACTCAAAGAAAATAG
AGCATGCAACCACCAATATGTTTGTGCTTACTGTGCCAACTCTGTATGCATATAACAAGG
TTACATTGCATATGCACAGCAGCATCCAGCATGATTAATATTTTTACAAAATATTTGATA
AAGAGACAAGTTTGAAAGCCTACTATAAATTCTACCCGTTTCTTGTGTCAGTTAGCATAT
ATAAGCAACTCCAAATAACTCTTCCTGTCCATGAACTTTGTATAATTCAAATTATTAAAG
TACTTCATTAGAAACCGGTGCATGTTTAAACTATGAATTTATTATTTATTTAATCAGTTT
CACATTCAGATGGGATAGCAAGTTTACAATTTTTCAATTCATAATTTTCAAACAGAAGAA
AAACTCATTTGAACCAGTGTACTTCAAGTGGCTACTCGATTAACGATGAAAACAGTCAAA
TCCACACACATCATCACCTGAAGTTGTCAACCACCGAATATCACATGGTATTCAAGGTTC
AGTTACTTAAGCATACAGGAACGTAACAGGGGATGAAGAACGTAGCAACTAGTTCTGAAC
CACAAGCGGCAGTCAAAACAATGAGAAAATTACCTGCTTCAGCATCTGCACGAGATCATG
CTTTTTCTTACTCAAGGTATCCAGCTTGTCAGTCAACTCTCTCTTCCTTTCTTCAACTCC
ATCAGGTTGACCCACCTAAAACAAAAATAGGACTCAGAGCTCTAGATGAAAAAGCAAACA
AGCATAATGCACCAAGCTTCCAAGCATAGGTTTTAGCTTGCAAACAAGAATGGTATGTGT
GGTTTGGTTAATCAATTGTACTCAGGAATCACAAAGCACTCAGCAAAATCTCCATGAAAA
ACTCAAGAATTAAACTGTTGTTCAGCAGCAACCGATAATAATAAATATATTGCATCCTCA
TGAAAGAGCTAACTGTTGTCCAGTGCAGCTAAAAAGCTTAATTGTAGAGTAGTGGAGTAA
AACTCAAAAGCATCATTACTTATCCTTACTTATTGGCTTCTTCCAACCCAGAAATGGAAG
AGGCAACCTAGGAATTTCATCCTACTTCCAACTCTGAGCTAAAAGTCTACTAGATTCTAA
GATAGAACCACCATAATACCATGACGAGAAGCAATTCCAAAAATCTACTGTCGGGGCTTC
GCAAGTAGTCATCCACCAATGACCTGAATGACCTGAATCTAACCCTAAGCCATCGTTAGC
AGGATAGCAGCTAAAATCTCACGCAGCTATGAGGAACCTACGACGAGGCTCACCTCCGAG
TTGGGGTCGAAGCCTTCGCTCTCGCCTTGCCCTTCTTCAGGGTCACCGTTGCCGCCGGCA
TCGACATCTCCGGCGACCACCTCTCCCGCATCGTCCATTTCCACATCCTCCACCGCCCCC
TCCTCCTGCTGCTCCTCCTCCTCCTCTCCTTGCTGCTGCTCGTCTTGCCCCTCTCCCTCC
CCCTGTTGCTGCTGCTCGTCCTGTCCCTCTTCCTCCCCCTGCTGCTGCTGCTGCGGCGGC
GGCGGCATCTGCACATCATGCCGGTCGGCCTGATGGTGCTGCTGACCCCCGTCCACCTCC
CGCGCCTCCCCCACGGCCGCGGCGCCGTCGTCCAGGCGGGAGTTGGGGGAGTTGGGCCGG
GGAGCCCCGGCGAGGCGGGAGACGGCGAGGGAGCGGCGGTGGAGGAGGCGGCGGAACTGG
GACGCGGAGAGCGTGGGCTGGGGCACCGGCCAGCGGCGCGCGGCGTCGTCACCGCTCTGG
TGGAGGTTGCCGCGGTACATCGAGATCGCCACCATCTCTGCCGGCCCGTGTGGATGGAGG
TGCGCCGGCTGGGGATTCGGGTGCGAGCGGCCGGCGGCGGCCCTGGGTTTCGGTAAGCCG
CCGTTGGGCCTTCACGGCGGATCTATCTTTCGCGTTTTCCTTGTGGATGCTGACCAAACT
CCGGGCCATCGGATTAGTTGTTGGGCCCTCCCGGTTTTCCAGCTCACTTACTGCTAGTTA
CCAAATCACTAGGGCATTGCTTGGGATACCTTTTTTTTGCAGAATACACGTGCAAAACAA
ATACTCCCTCCGCCCGATAAAACCTGTCACCCTTCATCTTTACCTAATAATAAAGAGNNN
NNNGCTTCCGTCGGAAAACCCACCGAGGTGA