Contig Data
morexGenes
Links



Map Locations of contig_47289 (5580 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_47289

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63121 1 1268 bp MLOC_63121.1 Available Available LOC_Os01g29840.1, FRAME:-2, EVALUE:4e-70, 13101.m03094 protein no apical meristem protein, putative, expressed





CDS Structure of MLOC_63121






Contig Sequence (5580 bp)

>contig_47289 5580 assembly3_WGSMorex_rbca.fasta
CGCTCCCGTAGCCATCATATCCTCGTGTTCTCGCGTGTGTGTCTCGGCGACGCTAGTTCC
GATCGATCAAGGCAGCAGCCAGGTTGCTACGTACGTGTGCATGAGAAACCATCCACCTGC
TAGCCTGACTGCTTAGGTTACGCCTACCTCCTCCATGAACCGATAGTCCGGCTAGCGGTT
ACAGTTCGACGCAAAGGAACTTCGTCGAGTTCGTCAACGAGCTTTGTTCGTCTTTGTCAT
CATCTGTCGTTACCGTCGCCTGAAAGTACTCGGCGTCTGGTCTGGGCCAACAGCAAGAAC
CCTAAATTTTGATCATGTTTCATGCCGCAAAATTTATGAATTTTTAGAGTTTGTTTACTA
TTTTTTCAAATTTACTCTTCATGTGGGTGTTGGTACACATGTGAGTAGAAAACCCCCTTC
AATCAATAAATGGCATATCTCAGAGACTTAGAGACGAAGGGATGAAGTCATAGTCATCTC
ACTTGAAGTGTGAGCCTAGAGGGTCAAGGGAGAAGGTGTGCTCCCATCGACCATTGTTGG
GCCCGGGCACATCCAAAACTTGTAAGGGAGAGAGAGGGAGAAGGGAAGCAATTGATGGGG
GTATTTGCATATGCCTAGGAGGCTATGTTGGTGCGAGCGGAGAGCATGAGGCTATCCAAA
GCGAGGACATGTGCAAGTGCAGCAGGCGCGATACACCATAGCAATGCCACAAGTGTCCTA
CTGGAAAGAGGAGGAAGAAGAGATGAAGGATGGGAGGCCAACTGGGTCCATGACCCACAT
GTAAGTGAAGTAGAGATGGGGAAGGGCAGAGGGATCAGTAGAGGTATAATTTGGGGTAAT
GTCACCCGATGAGGAAGTGAAGCATAGGGTGAACCGTGTGGTTTCACCCAATTTTTACAA
TTACATTGAAGTTAGGAAATGAAGATAGCTATCTCTGGAAAATTATTCACAACAACCGAA
ACATTTCAAATTGTTCAAACTTGAGACTTTCATTTTGTAGACCTGTTTTTTGTGAAGTTT
GGTCGATAATTTGAACATGACCATGTGGTGAAACGTGTACAAGATGTTCAAAATAATTAA
ATATGGTTTGTACAAGTTTAATATTTTTCATAAAAGGAAGTATTTTACCTATACAAATAT
CATTTCGTGAATTTTCAAAAAAATACTATAAAAACTTTTTAAATAAAAGTTTTCAAGGAA
ATACTGGTGTTATGTATAATACACCTCACAAATGATTTTCTATGAACTGTTCTTTTCAAA
AAGAAAATAGTTTATTTTATACATCCTTTTAATGGTTTCACAAAATAAAAGGTTTATTTT
CTTTTTTGCCAAAGTAAATTTTAATAAATATATTTTGGGCTCCACCCACAAAGCATAGTC
ATTGGGGCAATTTTTGGGCATAGATTGCAAGAGGGTAGGTGGAGGATTTAATATGGATTG
GAAGAAACATTGAAAATCAAACATAGCAACAACACAAAAATTAATTTTTTGATGGCTCAA
AAAATTACCTTCATTACAATAAGTTAAATTAAGCACACACAAGATGTGATTCTGTGTTTG
ACAGAGAGCGGGAAAGAGAGGGGGGGAGAGTGGGCAATATATACCAAGTTTATAAAAAAT
ATTATGCAATGCATTTTTTAAACTTTCAAAATGGAACCAAATATTCATAATTAAACAAAA
CAGTTCATTCCACATAGTTTTAAAACACGCATGATGTACACACTACGAGGTATTTTACAG
CACATACAAGCCAGCACACATACAGACAATATTAGCACAAGAGATGCAATGCAAGTCAAG
CAATGCATACAAACTCTCTTTTGATCACGCTAAAAAATTACATTAAGGTACAAACCAATA
CACATGTTGGTATATATCACTCATCTTCTCATGGATGATTAATTCATGCATGCATGCACA
CACACACACACATATGTTATATTGGATAATCTAATCATCAGAACTACCACATGCCATCCA
TACCCATGTTCACCGACGAGATCTCGTCGGGGGTTGCTGTGGAGCCGTTGCCCAAGTCAT
TGTTTTTTAGCCCGATCATGACATCCTCCTGTGATACTATGGACGAAGGTTCGCTCCCAG
GCTCAATCCCGACCATGAAGCCCTGGTCCGCACTCATCTCCATTTCCATAATCTGCATCT
GCATCATCGGGTGTTGTTGTTGCTCCACGTGGTGGTGGTAGAACGGTATCAACGGCTGTG
GTGGGGCAACCAACATCTGGTGGTGGTGGTTACCAATGTAGTCACCATTCATCATCGGGA
GCAATGTGTCATCCATCATCAATGCGGCAGGCCTGGTGGCTTGTAGCTGGTACGAAGAAG
CTGCAGGCAGTGACAAAGGTGGCGTCAACGATGATGATGCATTGTAGTCCATGAGCGGAG
GCAATGTAAAGGATTCGAGGAAGCCATGTTGGTGCTCTGCTCCCACACGCATGGGCATGG
GCATGGTGTACGATGACATAACCACCTTCTTTAGTCCAGTGCTCTTATGGAAGATCCTGC
AAACCACATAGTCCTCCTACAAACATACATAAAATAAATCAATGCAAATTAACTATGGAT
AGTATATTTCTACTACTAGTCCAGTTTTAAATACCTTGGAAGATGTGTTAATGATTGTGG
CATTGGTGATGTCGCTAGGCACATCGGGTGATGGCTGCTTGCCGCTCTTGAGCCTGTACT
CATGCATGATCCAGTTGGTCTTCTCCCCCTTTGGCGTCGTGCCCATGTAGAAGACTAGCG
TCTTCTTCATGCCGATGAGACTCATGGTCGATGGTTGGAAAATCTCCTTGTCTTTTCCGG
TGGCCTTCCAATAGCCGGTGGTCATGGCTCTGTTAGTCCGTATCCCGGTTGGGTACTTGT
GGTCCTTCTCGGAGAAAAAGTACCACTCCTTCTCCCCCATGATTGCCATATTGGGGAGTT
CCCACGGCTCATGCTTGTTCAGATCCACCTCCGTGACTACCCTGGTGTCGAAGGGTTTCT
TCAACACCTTGGGTACTAGGTAGGAAGTAATGATCTCCACATCCGTCGGGTGAAACCTGA
ACCCCGGCGGTAGGTGCAACTCTTGTTGTTGCTGAACTTGAAGGTAGTCTTCCATGGTAG
AGGTTCTCTGAATGGGTCCAATGGGGGTGCAAAAATTGGGGGGGGGGGATGATATATATG
TGTGTAACAATGGAAGGAATTCAATGACATCTAGAAATATGAGAGGAGGTACTTAAATAG
TAGTGGATGCGTGTACCGGGAAGACACTTGCCATAGAAGCTTCAAACTTTTTTTGGCTTT
TTTTAGTTTGGTCTTATTGGCGGTGTACGGATAGATGCTAAGCTAGCCAGATAGATAGAG
ATAGTTCCTCATCTTTACAACTGTGTCTTGCTTATCGTATTGTGAGGGACATGGCCAGGT
GGTGACATCTGCTAGGTTTCTCGAACCTCTCCAAGCCATGCCATGCCAGATTGAACACTT
TTGGTTTTGTTCCCATTCTTGTTAATGTATGCATATGCGCTCGTCATGCTACCCTCTACT
CATCCCATTTGCATAAAAAATGTGTGCTTCTATTGCTGTTGCGTGGCTTTGTGATGCAAA
GTAAACAAATGTTGTTTTATATGTATAACCTATGTATACATTCCACCATATGCATTCATA
TCTATATATAGCCTCTAGTAAAATCTACTAGTTTACATATTCCATCGTCTGTATGCATCC
AAATACTATATATAGCTTTTACGAGTTTACACAAAACATTTGTGTTCTCTAAACAATGTC
GAAAAGGAGATGAGCAAGGATGATTGTGCCTAAGAATAGTAGGAATATTCATGTTGATCT
CTCCCATCTACCCCCATGTAAACAACGTCAATAGATCCGTTACCTCTATCCCACATGAAG
GAAACATCATTAGATCGGTTACCACCAGGCGAGAGGACTGGTGCCAACTACCGCTGAATC
CCCTCATGCATGAGTGGGACCGATACAACTCACACACTTCATGCATGTACACAAAAGTGT
GTCACTCACACTTGTCTAGGGATATGCATTCATTGCATATTTTTACCCGCTTTTCGGGTT
GTCGTGTATGAGTGCAGGTACATCTAGGTGTCACGATCGACCAACCTTTTCACTTTTCCT
CAAAAAGTTAGCACGTGATATCTGGATCTACTCATGGCTCCAGTTGTGTGCGATTATGTG
CTTCTCATGTGGACCAAAACGGGTGTGTGTTGCGCACCATATGCCTTTATCATGGTTAGC
CACTAGATATATCCTTTTGTGGGTGATATGATTGATTTGATATACCACTGCGATCAAATC
AATAGTCTCACAAACAATTTTGAATACCTAGTCAACCAAATAATGTAAAAATAAAGAAAT
TTATTAAATGTAGTTACCACTCATTCACATACCTTCTCCTTTATTTGGATTATAAAATGT
TACATTTATGAGGAGAAAAAATAATGTTACGTTCATGATCCAAAAATGATACTCCCTAGG
CACCTCGCGGGTTGAGAGGCCTTCTCAACCCCATGCACTGGCTAACTTGGCTGGGAGATC
CATCATGGGTGGACCTTGGGGCGCACCCAGGGACACTATCGTTGGGCGGATTCGGGCGTG
GGAACCAACGCAAGCTATACCCCACACAATGGCCCATGCACGAAGGTGCAACCTTGTGTG
CCTGTCAGCGTTGTCAGCACTCTGCCTAAGGCTCGTAGAGGGTGACACTAGTGCAAAAAA
ATCCTAGTAGTGGCATTCAAAAAACATCGTTATCAGCGAGAGGGGAGACACCGGTAGTAT
GACACTAGTGATGAGGGATCATTAGCGGCGTCGATACCCAAAGCCGCTAGTTGGGTGCAT
ATTACTAGTGTTGGATCCTAATTTCAGTGTTATAGTTGTTATTGTTAGTGCTTGTCATTA
GACACTAGAGGTATATAATGTATTAGTGGTGTCTAGTATTCTCGAACATTAGAAGCTTAT
GATCGACATTGGCATTGGTTTTCCATCAAACAATGCTGATGTTTGCTTGATGGTTTAAAA
AAAGTTAGCCAAGACAACTTTTCTATAATTTTTACACATGCTACTACATAATGTGAAGCA
ACACGACAAGTAAATCATAGTTGTGCATCTACATCAATTAGTAATTCATATTAGGATTAG
ATCCGTCACCAACAACTGCAAAAAATGACATATAGCCTAGCCAATATGAAAACAACAGTT
AGTAGCATCGTGTCCTTGGACTTGCGTTGCAGCATGTGCATTCAAGCACTGAAAAGAAAA
TGACATATAGCATAGCTAATATGAAAAACAACCCTTAGTAGCATGGTGTCCTTAGACTCG
AGTTGTAGCTTGTGCATTCTAGCAATAATTTTCCTATCCATCTTCAATGTTTCATTATCG
AACTCTTTGTATCTTAGTTTCTACTCTAGCATGGACTTTTGATTAGCAAGCTTTGTTATA
ACACTTATAGTCCTCCCCTCTCATTTTTTGTCAACCCACTTGACTGTTAGAAATATGCCC
TAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTGTTCATGATTATCGTTTATTAT