morexGenes - Barley RNA-seq Database

Contig contig_472559

Source Contig contig_472559

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_472559 (4551 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_472559

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63077	3	2750 bp	MLOC_63077.1	Available	Available	LOC_Os12g25690.1, FRAME:-2, EVALUE:0.0, 13112.m02604 protein UDP-glucose 6-dehydrogenase, putative, expressed

CDS Structure of MLOC_63077

Contig Sequence (4551 bp)

>contig_472559 4551 assembly3_WGSMorex_rbca.fasta
TGCTTTTGGCTCCCGAGCTCACTGGAGGCCTTTAAATTCAAACTTCAAATTCAGTGAAAA
TTCGTATTTTAATATTTCAAAAAATTCTGAAAAAATACATGAAGGTACAATACACAAGTG
TGTAAATTTTCAGAACAAAATACCTTGAAATGAGGGCTGTGCAAAAAAGACAAATCTGAA
ACCTTTTAACCCATGTTACTATTCATCATTTCAGACCATGAATTTGTCTTTTTTGTACAG
ATCGCGTTTCAAAGTTTTTCGACCTGAAATTTTGCACGCACGCGAATCATATCCTTGTTT
AGTTGTATATTTTTTCAGATTTTTTGGAACTAAAATTTTCGAATTTTGAATTTTTCAAAN
NNNNNNNNNNNNNNGGCTCCCGGGAGCCAAAACGCCATTCTCGGTTACCCCTGACTAAAA
GATTTTAGCCTTAAGATTAGTTTTAGCCTCTCTTTAGTCAGGGGTGCTTGAAACTTTAGT
CTCTTAAAAGACTAGTTTTAATCAGACTAGTTTTAGTCTCTTCGATCCAAGCACCCTCTT
AATCTAAACTCGTTTACATATAAGTTTAACAAGTCAAGGGCTAATAGCATCTACATTAAC
TGTAGCATCGGAGTTTAACTACCATCGTTTGATCTCGCGTTGCAAACTAAAACTGTCTGG
AAAATGCGTTTGCTTGCCACCTCCTTCACTGCTGACGTTTGCCAGATAACATTACCGATA
GGCTTTGGTTTTACAGAGACAGAGGGAGTAGCTCGTGGAATACAAGAAACAACCTTAAAG
ATCTCTAACAGCTCAAGGTGGTTTACATTAGCTGTCCCAAGTAAAAAAATGATGAGTTAA
AGAACTGAAGTCTAGTATCAACGAAAAATACATCAATGCTGTCATGATTTTAGGAGAGGG
AAAAAGTGGGAACAATCAAATTGCTATAAGCTCATTGGATACAAATAAACATTCTTTTAC
AATCCTCAAAACAGCACAAGGATTGAGGAACATGTATGATCTACAGACGGCAGTGCAAGA
ACGAAGAACTCGAAGCAAAGATACCAACACAACCCAATTTTATGCCTGACTGAAAATGCC
GCGCCTCCGCAAAAGTTTGTAGAATTTCCTGCAGCTCCTGTGGAGAGGAACTAGGCGATC
GCGGGCATGTCCTTGAGCCACGCATCGAGCGGCTTGCCGATGGAGTAGACAATGAAGCCA
ATCTCCCTGAGCTTGTCGGCGTTGACGACGTTGCGCCCGTCGAAGACGAAGGCCGGCTTC
TGCATGTTGTTGAAGATCTTCTGGTAGTCCAGCTCCTTGAACTCGTTCCACTCGGTCAGG
ATGCACACGGCATGGGCCCCCTTGGTGGCCTCGTACGCGTCCCACACCACGCTCACCTGC
TTCACAGATGATGGGCTCGTCGGCTGCAGGTGCATTGGGTGGTCCCAGTCGAACTTGTTC
ATGGCGAGGTCCCGCTGGATCTGGTCCTCGGTGACCTGGGGATCGTAGATGCTGACCTGG
GCCTTGTCACCCAACAGGCCCTTGCACACGTCAATTGCCGGGGTCTCCCTGGTGTCACCG
GTGTCCTTCTTGAAGGCGAACCCGAGGACAGCCACCTTCTTGCCGGAGACGGTGTTGAAC
ATGGAGGACACAACACGGTTCACGAACCTGCTCTTCTGGTAGTCGTTGATCTTGATCACC
TGCTTCCAGTAGTTGGCCACCTCGGGGAGGCCGTTGCACTCGCAGATGTACACCAGGTTC
AGGATGTCCTTCTGGAAACAGGACCCGCCGAACCCAACGCTGGCGTTCAGGAACTTGGGG
CCGATCCTGGAGTCCTTGCCGATGGCGTAAGACACCTCAGACACGTTAGCACCGGTAGCC
TCGCAGAGCGCGGACATGGCATTCACAGAGGAGATCCTCTGGGCCAAGAACGCATTGGCA
GCGAGCTTGGAGAGCTCAGCAGACCACAGGTTGGTGGTGATGATGTTCTCCTCAGGAACC
CAGTTGGCGTACACCTCCTTGAGAGCCTGAACCGCCTTCCTGCCCTCGGGGGTCTCCCGA
CCACCGATAAGTACCCTGTCAGGCTTGAACAGGTCGTCGATGGCCGTGCCCTCGGCCAGG
AACTCCGGGTTGGAGAGGATCTGGTAGTTGATGCCCTTGCTGTTGTGAGTCAAGATCTTC
TCAATGGCCTCTGCAGTCTTGACAGGGACAGTGGACTTCTCAACGACGATCTTGTCGGAC
TTGGACACATCGGCGATCATCCGGGCAGCGCTCTCCCAGTAGGTGAGGTCGGCAGCCTTG
CCGGCTCCCAGACCACGGGTCTTGGTGGGGGTGTTCACTGAGACGAAGATGATGTCGGCC
TCAGCAACGTGCTTCTCGACGTCAGTGCTGAAGAAGAGGTTCTTGCCCCTGCACGCCTTG
ACAACCTCATCGAGGCCAGGCTCGTAAATTGGGAGTGTGTCGCTGTTCCAAGCGTCAATG
CGAGGCTTGGAGATGTCAACAACAACAACCTCAATTGCTGGGCACTTGACGGCAATGACG
GCCATTGTTGGGCCGCCGACATAGCCAGCTCCGATGCAGCAGATCTTCACCATCTTGTCC
GCTTAACCTGAGATTGCAGAGAGTTGTTTTAGGGAATTGTATAATAAGAAGTGAAAACTA
TTACTTAGATCAGGCATAGTTAAGCCATTTCTGAGTCAACAAAAGTAATCAAGATTCAGA
TCTTTGTGTGGAAAAGGGTTGACACAACAGACACATACTGAGCCAGGTTCCAAGAAAGCT
GCCCCAATAAATTCAGTAAACAGTCAGATATTGGCAACTTCATAGCATCAGTTAACTTGA
GGTGGCAAAAATAAAATAACTGTGTGCCTTTTATTACAGACTACGGGTAATGCGAATGAC
GGGCTGCGCGTAAGGAGAATGACAGACTGAAGAATATCACACAATCATCCGATTGACCGG
CCATAGGAGCAATCAGTAAAAAGAAAGGTAATTCTAAGCTAAAAAGTAGAATAAATTCAT
CGCATCAATGAATAGGAGCCAGGTTGCCAAAGCAATCCAGGGACCAGATCAGCAAAGTCA
ATGGATCCTACGCAAACTCTAAGATCTGAAGACAGTAAATATCTTCAGGAAACTTGAGAA
AGGCCAACTACAACATGCAACCACACTCCTTACATGATGAGATACCAGACTAGAAACTAA
GCAAAAAGTGATGCATGGATCTGGGAGAGGCTCACCAGATCTCAAGAGCCGAGGGAGATC
TTGACAAGCACACTGCCGCAGAGAGGAAACAGAGAGGAGCTGCGTGCCTGCTACAAGTTG
TGTGCAGAGAGAAGGCCGCAGCTCCTTATATACCCCTCTCCACACTACCCACACCGTGTT
GGATCTACCCCTCCGCCCCTTGGGGGGGAAAACGTGGCAAGGTTGGTGAGAAATCATGAC
AGAGACAGACTAGCAGGTGTTTGTTGCATCTTACGGCAAAGTGCTCTCGTGCATGCCATC
CATGAGCCCACCGGACACCCATTAATCAAGCAAGCGAAAAAGGCTCCACATGAGTCCATG
ACACACCACCAACCTCTTTACTTTAGCCACTGGAGTCTAGATGCATAAACAAAAGATGAT
GCGCTGTTAACAGCATGTGGTGGTCAGATCTGCAGCTTCCACCACCCTACTCTACCTCCC
GATCTCTGCTACCTTTCGGCCTATGCACACACAAGTAATTCAGGTCAAGGCATGGGGAGC
CGAGATGGCGGGCGGTGTACATACATGTATGTAGCCCAGGAGCAATAACCACTGCCAAAA
TCAATGGGGTTAGAACCATGCATTATGCACCCCACAATGGGGATTACAGTGGGGTGCAAG
AAGACACGACCAAATTCAGCAAGCTGGCCCTGATGCTTGTCCCGGTCAGGGAACTCGGGG
TGGATCCTGGAGGAACGGGTCCGGTTGGATTTGATTGTTCAGGGCGGAATTGACGGCAAA
ACGTACGATTATCCTAGGAAAGGTAGGGCTTGCTTACCAGCGAAAGGAGTGGCGCTGGAC
CGGACCACGCCAGTTTGGACTGTTCAGTGAGCACTGGCGACCGGACCACGCTCCGGGCTG
TTGAACGGAGCCGGAGGGGACGGGACGGGAGGGGAGGAGGAGGATTATGGGGGAACCGAA
CTCCTCGGCCTCGAGGTGGCGGACGCGCACCGGCGGGGGCCGGAGCCGGAGAAGGGGAGG
GGATTCGGCGGCAAGGGGCGCCGGGGTTGGTGCGGCAGATCTGGGAATACAGTTTTTTCT
TTTCTTTTACAGCGGCAGTAGGGAGCCAAAAGTACGGAGCACATGTAAAATTACACCCCT
TTCCAAAAAAGATTCCCCACTTTATGTTATAAAATCAACTAGCAAAAATGCCCGTGCGTT
GCAACGAAAGAAAAACTATCAGGTTATACAGGTATGATAGATATAAAGAACTATGAATTC
AATGCAAATATGACATAAGGATTTTTAAAATGTTATTTCACAAAGTATATCTGAGTGATG
GCATGATGAGATAAGGCACTTTTAAAATGTAATTTCAAAAACAAAAAATAT