Contig Data
morexGenes
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Map Locations of contig_47246 (7363 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_47246

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63072 1 1503 bp AK250546.1 Available Available None





CDS Structure of MLOC_63072






Contig Sequence (7363 bp)

>contig_47246 7363 assembly3_WGSMorex_rbca.fasta
GAGGGACAATACGAAACTGTGATCCAAGAGTATCAGAACCTTCAAGCTCAAAGAGTTTAG
AGCTATCTTGTTCAAGCCTCTTGATCATGGCAAGCTGAACATAAAAGTAACTGGTGATTC
ACATAGCTCGACACTACTCAAATTACAATACCTTAAATAATATGGAGCCTGTCCTAACAA
GACTTACCTCTTTCTTTAACTGGTTGCAAAGCTGTGTTTTCTCTGATATGAGTGTACGCA
ATCCCTGAAGCTCAAACTGCATGTCCATTACCTACGATATTTTGCATGACAACTGTTAGT
AAATACATGAGGGGCAAATTGCCACAATGTGCTTCATCTGATTACAAGATATATGGAAGT
ATAAGAAGCGGAGATATAGCATTGAGAAAAGAAGACATGCCAATTTGTAAGAAAAGGAGT
TAGGACAAAAAGAAACGTAGGGGGTACTCAGTTTGAACTTGACAGAAGAAAGGCAAATGG
AACAGAGGAAGTATCAGCATATTAACATAAACACGAAAACTACAACTACATGCATAGAAC
AATGAACCAATGATGCAAAACAAACCTTGCTTGGCTGGTGTAGCATTTTTATTCGTCTAG
CCTCCCGAATCTCTTTCCTAAGTTCCTCTATCTCCTGACCAGGAAAAAAACAAAGATTTT
AAGTAAAAAATGTAGCAATTACTAAAATAAAAAGAATCCATGTCAATGCATTTGCATCAT
CAACTACATAAGAGGACGTTCATTAATTGAGGAAGCACCTCCTTCTCTCTGCTACTTGAT
GCCGAATCATGCTCCTGCAACGCTTTCTCAACTTTTTCTATTGCAGCTCTAGATTTTTCA
ATTTCAGCAAGTGCAAGAGCTCTTTCCTCTTCGGCTACCTTTCGGGCATCTTCAGTAGCC
TACGATATACAGGAGAATGATAACTTCGTTATTCAGGTGTAACCAAACGGTATTATTGTA
ATGCTAGTAAATGCTGATATCTTAATAGGCATTCAGCAGATTGTTGAGAGACATCACACG
TACTAAATTATACCAAAAACTGAATGTGGCTCATACTGAAAACTAAGACTACTTTTCTTA
AGTTAGGCACAACACGACCTCGCGAACAGCACACGGTACATTATACGACAAACTATAGTC
TCCGGTTATCAAGAATATAAAAAATAAAGACAAAAAGGACACATGATAATTTGCCCAACA
GATTTTATGTTGTAGCCTTAGAGATACAAATTGGCTCAAAAAACAATCTATTTCTCGTAA
ACATTAAGGTTGGATTAGGCCAGTGTGCCAAGTTTTCCAGAAAAGACCAGAGCATTCTGC
AAACGAACTCAGGCACTCCTAGGCCTCTGGTTTTACTCTCACTACAACCACCAGGATCTA
AGAACAAATTTACTTTTCATTATATGAAATTATGAATCATCAGCCTTATAGAACAAAAGT
CTTACCACGTTATGCTTGAACAATGCCTACAGTATCAGCACGTTACAATATACATTTCCT
AATGTACTGACAATTGAAATATTAATCACTTATGAAGCCTCAAACATTTTTCAGGCTCCT
GGATCTGATTTTACAAAGTTTAAACATGCATGACTAACAAATTCGATAATCAAGAAATGG
GGTAAACCTGCTTGAGAAAGCTAGCCAACTTTTTTACTTCAGCCTTCTCATAAATTAATT
CTCCTTCTCTTTGAGTAAGTTGAACTGCTAGTGCTTCCACCTGATAGAACATATCTAATC
ATAATCACAAAGTTTTTGGAACAAAAGGTAATATGACAAAAAATAGAAAAGATCACAACA
GGAGATAAAGAAGAATCACAATTAATAAATAATATGGAATATGATGGATTTCTTATTTTA
TGTGCCTACCTAGACTGATAAGCTTAAATCCAAAAATGTGCAACCAAAAATTATTAGTAC
TACTTTCGGATTCGGAGCATTACATTAACAATCTTTCAAATTTGAGTATTTTTAAAACGC
TCAAAGCATCATGTACAAACTATTATGTGAACGAAAATAATGGAAAAGCACAATCAAGGC
TGGCAGTTGGCACCTAATATCGTGTACAAGAAAAAAGTTGAGCTATTTGCACGAATGCTA
GCTTAGATAGAGCATACAGGGGTGAAACTAATTTAACCCGTACGTCCAATTACGAACAAC
TCAATCAAAATAAAAGTAGCTTATATTAGAAGACAAATATTGGCAGGCTAAAGAAGAGAT
TAACCAGCGAGATAGCTTCATCAGCATCATCTCTGTTTCGACCAGCCACACGGCCTTTCA
GCGTGTCTAGAACATCTCTGAGCTTCTTCAGAAGAACCTGCCTGTCCAGTGAAGCTGCTT
CTCGCCGCTTAGCCTGAAACATGAAGCAACAACTTTAAAATAGTCATTGCAAGGAAGTTA
CTAAGACTACAATGTGATATTTATCCTATCTAGCAAGGCACGATGTCAATAGTACAGTGC
AGCCCCATGGAACCCATATACTTATCCATTTGAAGCGAATTTATATGCTCCTTTGAGAAG
GAAGAATCTTCGGGAAAGAGAGGTAAGCTATAAATGAAGTATGACTATGAGTTCAACAAT
GATTGAACCAATTAATGTGAGCTCCGGAGACACGATCTGGGGGCGCTGACACTGTTAGGG
CTTAGGGGAGTGTGATAACAACTCCATAATATGGTCAATGACAGATAAGTTATCGGGTAT
AATTCTTATAAGGAAATATTTTTATATGTATCCAGGTGACACGCCACATCATTCTTTATA
TAGAAAGCACGATGAATTATAACCAGGAAACCACGCTAATTACAACAACTTCCATATATG
TGTCATTGGAGCTCCTGATATACTCACATTGTTGATAAAAGTCAGAACAAGATAAAATGC
TTGGACTGATTAGCATACCTGATCAGACAACTTGGAGGCACCAGACAGACCCTTTTCAAA
CTTCTCCCTGAGATCACGCACTGATAGCCGCTTTCGCTGCTCTAGCAGTTGTGTTGTTTC
TTTCGCAACAATCTCCTTCAAAGGCACAACCTCGTGCGTCTCCTCTGGGTCAATGATTTG
GTTGTTTGGCCCAATCCTGTAGTCTGGAAAGTGGCCCTTAGGGAAGTTAACATCGGATGA
TACCATGTCAAGTGCATCTTTCTGCATGCCTTCTCCGGAGTCATGGATGACCCTTGTCAT
CTGCGGTACTCTGATATGGGACAGAGCAAGAATATAAATTTACAGTGGTAAACCACATAA
AGTTGTGATGCAAGTAGAACATATGAAGGTGGTAACTGATGATATATTGGCCATGTCTCA
TGGTGCAAACAACTTGCTGGGGTACCTTATATGCTTCAAACTGATGGTTATTTTTCATTC
GCATAGCTAAGAATTGTTGAAACGCATCACAACAACTTAACCAGGAAGCAAATTCGACCC
AACCAAGTACCCAGCTCAACCAACCTAGCTAAATCGGCATCATCCAGTGAGTTCAAGAGC
TAAGAAGCAAGATCAAAGCAAAGAAAAGGAGCAGGCTAAGCTTTACAATTAGAGGTGCTA
TGGATAAATAGGTCAGTTGAGGGACATGAATTCTGGAACAAGACAAAGCGACAGCCTTTG
GGCTAGAAATTGCTAATCGATGCAAACATAGTACTCCTAGATTCAAGGTAAGCCATGACA
ACACCCGTGCTGATTTGTGTGGAAGAATGCAAATTTCTGACCAGCAGCAGCTGATAATAG
GAGACAGCCTCTTAAAAACGTGACTGGGTATGTTGTGTAACGAACTGACAATACAGCCCA
ACCAACCAACCAACCAACTGAAAAACACAGTGGCTGAGGCTTGGAAGGAACAAATTTTAG
GATAGGAAGACAAGTAGTCTAACTTTTGCCGCTACCAAATCGAAACCTGCGAATCCCCCG
GGATGAAGTGACACGGCGCCGGCTGGGACCCCTCACCTCATGCGCGCGCGGCTCCCAGGA
TCGCCCGAGAGCCTGGCTCCCCCACGCAACCACGCCGCCGCCGTCCAACGAACACGAGCT
GGAAGCCTCCGGAGCACGCAACTGGCAGCGGCCAGATGGCGGAAGGACCAATTCAGCTAG
GGTTTTAACCCCCTTGTGGCTTGAGAAAAAGGAGCTGGATGGATCGAGGCTGTTGGTTTC
GATCCCGTGGAGGTGGGATCCTTTTTGGGCGGTGGCGAGTTCGAAATTTGGTTGCGGGAT
TCGGGTGAGGATGACGCCGACGGGCGGGCAGACGGAGGAAAAGAAAACGACGCGAGGAAG
GAAGGGGAAAGGTGGAAGAGTACGGCGTGCTGGTGACGGAAGCAAAGCGGCAGAGGAGGG
AGGAGACGGGGAGAGAGAAAGGGGAGCTTAGTTTTAGTCTGGGAATGGGATGGGATGGGA
TGGGAATCGTCATTACCGCCATTCAACGACGGATTAGATGTGGGCCCGCCCTTTTAAAAA
CGGGCAGGACAGGGGGCAATTGATGGTACGTACTGTATTTGCTTGCTTTGCCTCAAAAGA
AAAATATACTAATTGGTTGCTGCACCAGCGGTCCCGCGGTCAAAAGAAAGGATGGACTCG
CACTGTCACTCGACGACCATTTTATACTCGGATTCAAATAGTAGCACTACATGAGCACGG
AAATGCATTTCGGATATGCTCCCGGGGAAAAAAAAGTTTGAAATGAGAAAAAAATCAAGA
ATAAATTTATTTGTGTACTTAGTTACATTTACATGATATATGTAAATTTTAAAACATAAA
GGTTAAACATTTTGGCTTGTGCAAAAAAACAAATTGAACCCCAAAAGTCACCCCAAATTT
GTTTTTTTCCGACGAAACACCGCTGCTTCTTATTGTACGAAAATTGTCAAGAATGCTTGC
GATACTAATACAATCATCTATAAAAAAATTCAGATTTTTTCATAAACATTTACTATTGTT
TTTTTACGTTACTGTCCATCCGGGTGCATATGCACCTCGGAGCCAAAACACCTCCCCTAC
ATGAGCATCTCTATCAAACCTTTTAAAATCGTAAACTATAAAACTGGGCTCATTTTAGCT
ATGACCAAACAAATGTCGTAAAATAAACTATAAAACTCAGATAAAGATCCTTTCTTCAAT
TCGGACGTCGACGCCCCTTCCCGAGCCGGCCGCGCCGGCCACGCTTGCCGCGCCCAAACC
CGTCGCCCGTCGGCCACACCCCGTTCTTGCCTGTCGCGCCCCATCACCACGTCGGGCGCG
CCCAGCCTCGTCGGCCATGCCCCGTCACCCCACCGGCAACGCCCTGCTTCATTGCCAACC
GCGCCGACCAAAGACATGCCCCTTTATCGATCGTGTTGGGAGGATTTCGGCAGCGAGGCT
GAGGTCATGGGAGGCCACGATGAGGTCGAGCTCGTCCAATTCGAACTGACGGCGATCGAT
TCCGACGTCCAGCGACCTTTTTCGGTGTGCGGTAATGAGCTTTGGCAGGTTTAGGACGGA
TTCTGACAAACTCTGCGGCAACATGTTTGCTCCGACGAGGTTTGACCAGTATATAGGGGG
CCCTCGATTCGGCCTTCCAACCTTCAAATATAATGGTTTCGGGTGTGGATTTTCGGTGTC
CCTTAAAGTTTCTACGGTTTGGACTATTTTTATGGTTTCTGTTCTGGAAACATTTTTCAA
TCAAAACTGTAAAACGTAAAAAAATGGGTTTGACCACTTACGGGGTCTCCTAGAGTTGCT
CTTACAACCGGACCCCTCATATCCGTCTCAATCACGTGAACAGGTCGTTCGGTGAGTGAT
CGATCACAAAATCGTGATTCAATCAGACCTCTCAAACCTGCCTCAAATGTCCGGGCTTAC
CGGCACCCTCATATCCATTCCAAATCTAGGGCGGCCCGGTCATGCTCGGGCGCGTCCACT
ACGCGTCCTAGATGACGGTCCTAGCCCATCATCGACCCACCACTGTCCCACAAACCCCCC
ACTCTGGGTGCCTCGCTTCGAACCCTAGCTCACTCTCTCTCACCTCGTCCACTCCTCTCC
CTCTCTGATTTTGATCCCATCCACTACAATGTCGAGCTCCGTGAGCCGCTTCGACATTGA
CGTCGACTCTGACGAGGAGCTCACCCTCCACATCGCCTTGGAGCAGCCCAAGGTGGACAT
TGGCGGCAGCTCCGGACATAGAGTGTCGTCGCAGCTCCCGCGCCGACACAGAACGGACGC
CCGAACTAGACCCTCCTCGCCAGGACTGCGCAGTCCGCACCGGCCCGCGCCATCTTCTTC
CCTCGTTTGGGCAGCGATGGGTGCTAGTGTCCGCGCTGTCGGCCCGTATGCGCACTTCGG
AATCGGAGGCGTGTGTCGCCCGCCGTGAGAGGTAGCGGACAAGGAAGAGGGAAGCGACGA
AGGAGTCCGCGCGCCGCCGCCGCGGAATGCCGGTGGAGCCCGACGAGGACGGACGCCTCT
TAGCCTAGGTGCGCCGCCGGTCCCTCACGACGGTGAAGACGGACGCTCGGCGTCTCCGAC
GAAAAAAACACCAAGGGGCTCCGGCTTGCCATTGAGCAATCGGAGCGGGAGGCGAAGGAG
GCAGGGGCGGTTGCGGCTCGGATGGCCAAGCTGAAGCGGGAGCAGGACAGGACGATCCGT
CGGATAATAGGGCTCATCGTCCTCTCCGACTCCGATGACAAAGACGACGGTAGTTACACT
TCCGACGACGATGACCAAGACTCTCCCAGCTGCGGACGGCTACAGCCGCGCCAACAGAGG
AAGTGGTGATCTCCCTCCTCCCGCATTGTTTATATAGTTTTTAGTTGTAAAAATTTATGA
ACTATCTCTGATGAACTTAAGATGATCTTTTGAGTGATGTTTATTGTGTGTTTGTGATCG
ATCTTCTGTTCGTTTGCTTTCGATTTTGTTGTTTTATGCTTGATCACGTAGAGTAGCTCA
ATGTTACATGATGTTTAATATGAATATGGGATGTCCGATATGAGATACGCGAATACAGAA
CACAAAACATATGACGTGTCCGATCAATGTCCGCGAACATTTAAGCGCTGGATTTGCAGG
TTGTGGTTGTAGATGCTCTAATTGAAGTAATAAGATGGTAGGAGCTGTTGGTGGTGTGAT
ACTTGTAGTCTTGTACCCGTCGGTCCATGGTCATACCCGTACGACGCATTTCTGACCATC
AGTATCGTACATACATATTCTCTCGTGTGTAGGATACGACACGACCTACTTGTAGAATAC
GGGGTACTACTCCTACTTAACACGGAAGCATCCACTTCCGGGCCAGTGCATCAATAATGC
AGGTGGCCATGGCAAAATAGCAAGGCGTGGCGGCATACAGTTCCTTGACGACGTCCCCGT
CCGTGGCTCCGTGTGATTCTAAGAGCATCACTAGTAGTACCCT