| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_47233
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_63058 |
2 |
2770 bp |
MLOC_63058.1 |
Available |
Available |
LOC_Os01g09850.3, FRAME:-2, EVALUE:1e-148, 13101.m01055 protein ZOS1-04 - C2H2 zinc finger protein, expressed |
| MLOC_6311 |
4 |
2016 bp |
MLOC_6311.3 |
Available |
Available |
LOC_Os03g01760.1, FRAME:-3, EVALUE:0.0, 13103.m00110 protein exostosin family domain containing protein, expressed |
| MLOC_63104 |
6 |
2133 bp |
MLOC_63104.2 |
Available |
Available |
LOC_Os06g01630.5, FRAME:-2, EVALUE:0.0, 13106.m00067 protein 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed |
CDS Structure of MLOC_63058
CDS Structure of MLOC_6311
CDS Structure of MLOC_63104
Contig Sequence (10391 bp)
>contig_47233 10391 assembly3_WGSMorex_rbca.fasta
ATCAGAGGATGGCAACACATCATTGATTAATAATATGTGGCATGAAACACCATGTTCAAG
TAGGGGACTACAACGGAGAGCGGGAGAGTGGACCGCTAAAAAGAGACGAGGAAGTTAATG
AAGACGTTGATGTTGATGAAGACAATCACCATGGCGATGGTTCCCCCAGTGGCACTCCGG
CGCCGCCGTAAGAGAAGGGGAGAGAGTATCCCCCCTTAGGTTTCCTCCTTCATGGCCTCT
CCCCATCTAGGAAGAGGTTCTCACTCTGGTCCTTGGCCGCCGTCGTGTCAAAACCGATGG
ATCTTGGGTAGGGGGTCCCAAACTATGGACCTTGGGTCGATGGGTTACAGGGGACGAAGG
AGATGATGTTTACCCAGGTTCGGGCCCTCTTTATGGAGGTAAAACACTACATCCTGCTCT
TGTTTATATTAATGATGGAGCATCAAGTACATAGTTGATCTACCTCGAGATCATATGTTG
TGGTCTAAACCTAATGATGTAAACGTTATGTCTAATGAATATCTATCAACTAGCTTGGCT
TCGGATTATATGACATACCGGAGGCCTTGGATAACAAGAGTCCTAGTCGGCTACATTGAT
GAAGAGGAGTCATTGTCTTGATCACCAAGTCTTGTGGAATCTTCCTCGTATATGTCGTCG
GCTGCCCGAAGTAGCCCAGGAGTCTGACCCGTAGAAAGAGGTCGGCGGCCCGAGGACCCC
TTAGCCCTCCGAGATTGGATCTCTCTCGTCGTTTCTCTCGTGTTTTCGGTGTTGTTTTAT
GGCCCTTCACCGTTTCTTAAATNNNNNNNGATCCGTAACTCCGATCGGGCTGAAAATTTA
AGGGGATTCTTATCAGAAAATATCTTTCTTGCGGCAAAAGAAGGGCCCAACCGACTTAAG
GGGTGGCCACAAGGCATCACGGAGCGACCACCCCTTGGTCGTGCCATGTTGCCTTGTGAG
AGCCTCGGGCATCGTGTGGTGTTGATTCTTCTTCCCAAAATTCACATATATTCCAAAAAC
AATCTTTGAAAATTTTATCGCGTTTGGACTCCGTTTGATATGGAATTTCTACGAAACAAA
AAACACACAAAAAACAGGATCTAACACTTGACATTGAATAAGTAAGTTAGTCTCAAAATT
AATATAAAATGTTGCCAAAACTATATAAAAGTTGTAGAACATTGGCAAGAATACTTTACA
AATTATCGATACATTGGAGACAATATGTCACTGAGTCGTCCCATATTTCCCTAAATACGA
CATTTTTGTGCATAACAAACATACGCCATATGCCCATGCTTCAAATCACGAGCTGATAGA
AAACAAACAGGATCTCCGGAGCATCTGAGCTCGGGCACCAAAAGAGCCTCCTTTGGAATA
TACTTTACTATGTTAATGTGGTATGTTTAAATTATGCCCTTCTATGAATCACAACTTTCT
AAACGCACTTCTTGAACACCAAGATAGAGAAAAATCTCCTATCCCAGTTGATCGAGCTGA
ACCCACCCACCGCCGGGCAGGTGCATCAGCCTCTTCTTTCTAGTTTCTGATAGGGCTACC
CGCACTAGCCTCTGATCTTTACTCCTAAAAGAAAAGGAAGAAGATGGCCATGATAGATTG
GTGAATGAGGAAGGAAAAGAACCCTAAATTGTCCAAGTAAGATAGCGAAAGAGAAAGTTA
TCAAGCAAGCCTGTTTTGACCAACCAACCAAGCTCCAATGCATTTCAGTCTCACACATAA
AAGCGTTTATCTGATTCAATCACAGTATAGGTATAAGGAGCTGAAATCTTTTAGCCGCTG
GAGCTCTTTCTTTTGATTCATACTAGAAGAATGAAATAACTGCTAAATAGCCATAAGCGG
TGGTGGTGATGAAGTCAGTTAATCAGATATATCCTCGACGATGAAACTAAATCAAGTAGG
GTTTGAGATTCGACCATGTTAACTCGAATGATACTCTTACATCACCGCATTGGTATTGTA
ACGTCTTAGCATAATTTACAGTACCATTTTGTTTTGTTTTATATAGTAAGTGTTGCCAAA
AAAGTCCCAATTTATGTGACGATGTACAATAGAAATTCCCGGCTCAAATCATGCTCACCA
AGTACCACATCACTAGTCTTTCTCGTATTTTTGGTTAAACTTTGACCATGATTTAACAAC
TCCCTCCTATCTAAATTAATTGACACACCATCTATACAAACGTAACTAAGGCTATATAGA
GGTTGCATCAATTAATTCGGATAGGATAGAGTAGTTAAATTATGGTCAAAATTACATTTA
AGTACGAATACAATAATATAATTTCATGACATGTTGGTCAAACTTTGATACAGTATATAA
AATGCAATGAGACTAATAAACCCAGACAAAGGTAGCGGTCGGCCTTTTCGTTGCAGGGAC
CGAACAGTCAACCTTAATGTACACACAAACACAAGTTACACAATGACACAATACAATACA
CCACACAAGCATGCACTTATAGGCTGCCAAACGGAGAGACATGCACGCAGGCTCTTCTTT
TCATAGTTTCCCTCCCGAGCTGGAAGTATCCAAGGTAAGTAGAGAAATGTCGCTAGAGGC
TAGCTCACCCGTGTCAACGGCTAGAAAAGCTTGGGCTTTCCGCGCCCTTGACCTCTCTCA
GTCGCCTCCCCGGGCCATCATCATCGCCATGCATCGATCAACACACCCTTTCATCCATTG
ACATGCATGCAGATGCAGTTCGTGCCGTGTGGGTGGTGCTGTGGTACTGTAGCGTACGTA
TGTGTAGATTGGTGGGGAGCCCGGCCGACCCCGCGGGACAAGGAGGCCTCGTGATGGCCG
CAAAGACACTTTTTTCTCGTCCTTGTTCTGTAGTGTTTACACACGTCCAGTGCAGACCAA
ACGATCGAGGCAACCACGCGACCCCATAACAAGAAAAAGCATGCGAGGCTGAGGTGATCC
GAGTAGGCTAGGCGGGCGGGTGGACACTCCACGACGGATGCCGGCGCCGCACCCAGGGTT
CGGCTCTGGCCTGGCCTGGCCTTGTATCGCATGCAAGAACGGCAAAACCCCGTGCACCCA
CGAGCCAGCCAGTAGCCATCTCTCAGCCAGCAGGGGAGGCTAGGCTGTGAAAGCAAATGG
GAAACGGCCACACGTAAAAAAGAGTACGTGATCGTATGCTACGCCTGCACCGCCACCGCG
TGAGCATGTCCTTGCTAAGCCGGCACGCCCTACCCGTACCCGGCCCGGCCCCGTTGACAA
CATGACATCCCAGCAGCATCTGCGACATGATCTCGATCTTCCGAACAAAGCTCGAAACAG
CGTACGTGCGTTGCGCATACGTACGCGCTCTTACGCCACGCACGCGCAGAGAGAGAGAGA
GAGAGAGGGATAGTGAGCAACAGTGCGTGCACGTAGCAGAGCAGCGAGCAGGCATAGCAT
TAGCGGAGCAGCCCCAACATCTCTCTCCTCTCTCTTTCTCGTGGACGCGCGCACCGCGAA
AGGGACACGTGACGCCGCAATTTTGTCCGGTAGCTCTTGGAGCCACCCCCAAAACTCCGA
TGCGCCGAATATTTGATGTGGAAAGGGACGCAGCTGTTGCCCATGCACGATTCCAAAAAC
TTACAAACCCACAGCACCCCTACCCCACATCCACATGATGATACACATTCATTTTTCTTC
CCTCCCGTTTTGCTCCACCAAGCATGCTCCTGATACTGGTACTACTCCACATCCATGGTC
ACATGCGAAGAACAGTGCCTATGGCTAGCCCAGCTGCCGCTACGGCAAACAAGCCAACAA
AAACGACTACTTCCTCCGTTACTGTTCCGTTACTGTTTAGAAGACACAGCTAAACTTGCG
TTAGTTTTTAAAATAGACAAGGTTTAAGACGCGAAAGCAATTATTCTTATTAATTAGTAC
TTTTACTAGTCATGTATGCGTCCTCCCAATTTACTGCTCAGGCATTAGTACTAGTATTTT
CTCAGTTGATTAGGCGTATTAGCATTTACACCTGCTACATCTCACAACCAATCGATGACT
ATCTTGGTTTTAAAGATTTTCAAGCGTGTCTTCTAAACCGTGAAGAAGGAGTAGCTTCAA
TCAATAGTTCGCCTGTGTGCGTGTGCGTGGACACGGTCACGGACGAACACAACTGAGACC
GAATTAATGGAGCTGGAATTTATGGCTGGCCGGCTGCATGCATGTTTGCATGCACATTAT
TGCGCACGACGACCTGACTAGTCGGCTGGCCGCGTCGCCACAATGATGTTGCGTTTTGAA
TGGAATTCAGGGTTCGTTCCTTTCCGGCTGGGTTTTAATGAAGGGCCGGCTGCCATGAAA
TCATGGGGATTCCCTCGAACAAGACAAGGAGGAGATACAAACATTTATCATCACCGAGGG
CATGGCCAAAAGGAAAGCAGCAGCAGCAGCAGCATCCATGTTGGAGTTCTATTCCTCTAT
TCTATTCTACTCTACATAGGATAGATAGGTCAATCGCCGTCTCCACTGCAATGATGGTAA
CTATGGAAAGAAACTACTACAGCGGCAGAGAGAAAAGAGACAGAAAGAAGTTCTCGAGCT
AACTGCTAGCTGCTGCTTTTCTTCCATGTGTTTACGAGTGATGACAGGTGAACTAGAGAT
GATCATATCTCACATCCATCCATCAATGGAGACAAAACAACACGAAACAAAAAACAAAGC
CTGCATGCGGTACTACTACTACAAGGATTTACTGCTTTGTGTGCGGTTGTAGTAGCATCC
ATTTTGCTGCTCCTGGAGATCTCTTCACCAAAAATTCAACTTGGGCTATCAGATGGCAAG
GATACTACCAGTACATCCTAGGGGATATCTTTACATTCTTTACTGGGAAAGGCTGTGTAA
CCTAAGCTAGCACTACCACTTAATCAAAACATATGCCCATTCATTCATATGTTCTATTGA
GAAGGATTTGTATGGAACCACAATCGATACTTTTTATCTCATGTGCTTGAACCCATACGT
ACATGTTACCCCATATTATCAATAGGAACCAAAACTATTGCCATGTTCTCTCCAGGTACG
ACTGTAGTATGACCAGTGTTTTGGGGAATCTAATGGTTTCTTAAAGGATTTATTTTGGAT
GTCTAGCCTCTAGGTATGTTTATTAATTAAGGTAGTTACTTTTTTTGCGAATGAATTAAT
TTAGTTACATATGCAATATATTTGAGCTTAATAAATGTTGGTATGGTATGGGTATTGCCG
AGCAAACGTATATTTTTCAGTTGTGCTTACAATCTATAAAAATTATATTTGAGCTCAAAT
GTTATTAATATATTAAGAAGTGCTTATAATCAGCAATTAAACAAGATATGCTACCAAAAA
TGTCAAATGCTCTTTTTCTTTTGCGTTCCAATTTAAAAAAATGTCAAATGCTCTGATCAA
ATGAACAATAGGAATATACTGTTCAACAGTGCACCTTATACTGTACACCTACATGGAATA
CACAATTTATTTATTTAACGGCAGTGTTTTCTTTAACTGTAATACGTACTCCGTACATAA
TATACAGATGCCAGTTCATTTTTAGAGCACTTGGGTAATAAATCCTCCCAAATGCAGTAC
TACAAGGTGTTTGAAATAGGACTACTCTTGAAAAGTCAAATCTATTAATTCTGATGTCAT
ACTACAATAGAAGATATCAGCATTCTGCAGAATCATTCGCTAGTAAATAGAACTGTCGTA
AACGCTGATTCATCTGATAAACAGCTTATCTACCCACACAAGTTATTGACGTAAAAATTC
CAAAAGTTCATTCCAGAATTATCTAGATAAATGACATGAGCACTAGTAGTACCAGCTGTA
TGGAAAGAAGGGCTAAATCATCTTTATTACAACAGACATGGATTAATTATGATATATAGC
ATGAACAAGAATTTATTTGCAAGTTCCATTATATAGAGCGAGTGAACTGAAGAGCCCATT
CCTCTCAAAAAGAAGATAAAATGAGTAGCAAGCAAAATGAAAGAAGTTGATTTTGCTTTA
TCGACCTGAAGGTTGAATCCAACTTACTGATCAGTGTGATTGTGATTAACCTTGACGTAA
TATACGATCGAGCAATGCTGGACGCTCGATGATGTTTTAGTCCATTAATTGCATGGAGCA
TCAAATCATCAACTTGGAATCTTGGGTATGCTTCGGTTCATCAATGGCGAGCTGATTGTG
AGGTCGATTACTAGCCATGCCATGGGTTGCTGCTCTGGGGCCCTTGCTGATCGTACGCCG
CCCTCGCCGAGGCCGACGTGGGCATGCAGGGATCGAAGCCTGCCATGCTGAGTATGTCGC
CGTGGGAGAAGGCCCGCAGACCAAGGAAGTCCCTCGTGAGGCCGTCGTTTGCGCCTCCGG
CATTGCCTCTACCTCCGCCGGCGGCGGCGGCATTGCCGGCATTACGATTGGCGCTGGGCC
TCTGGTCCACTCCGTAGGGAGCCGGCGCCTCGAACGCGTGCCCAAATCCGACGCCGACGG
CGGTGCTTGTCGCCGCGCTGCTACTAGTAGCGGCAGGTGGTGTATTGTTGGTGACGTTGG
TGATGGCGGCACTGCTGCTACTGCTGCTGAAGGTGCTCGCCGCCATCTGGCCTTGGCATG
ACGGCCGGCTCAGCGTTGCACCCATCTGCGCCGCCTTCTGGAGCAGCGCGGTGGCCGACA
TGTGCGACGAGGCCGTCGCCCCGGCCGCAGACGACGACGGAAATGACGCGAAGCTCATGC
CCACAGGCTGCGTGCTGCTCTCCGGCGTGGAGCTCGCATTGAACTCCTGTTCCATCCTGG
TCGTCCCGAACATGGTCTGGGCGCCCTCGCCGGCCATCTCCAGCTGCTGCTGCTCCGATA
GCCACGGCTGCGCGAACTGTTGTTGCTGCTGCTGCTGCTGCTCCCGCTCCCTCTTGAGGC
ACAGTTCTTGGATCAGCCCGTGGCCGCCACCGAGCGAGCTCGACGGGTCCATCACGGACG
GCATCTGATACCCCGCGCTTCCGCCGCCGTGCGAGTAGAGCATCCCCGGATGCTGCTGCT
CCTCCACGGCCACCGCCACCGCCCTGGCGCTCTCCTCCGCCAGCGCGTCGCAGAACGCCC
TGTGGGTGATGAAGCTGTCCCGCCTGCAAATGCCAAATAATCATCGCATTCGCATGCACG
CACACATTGTCAGCATGTCATGCATGGCCATAGGCATAGCAGTGGCCTACCATCTGGCAT
GCGCGGGCAAGACGGAGAAGAAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGACAGT
GGGAGACGTGCCTTGAGAAGAGCGTGCCGCAGTCGCATCGGTACTCGCGGGTGCCGCAGA
CCTTGGAGTGGGCCTTCCAGTCGGACTGCACGGCGTAGCGCTTGGCGCACTTGTCGCACT
TCCACTTCTTCTCGCCGTGCTTGCGGCTGAAGTGCTTCTTGATGCCGGTGAGGTCGCCGA
GCGCGCGGGAGCGGTCGTGGTGGACGCAACCCGGCTCCGGGCACACGTACACCTTCTTGC
GCACCACCTCGTTGGGGTTCCGCTGCTTGAGCTTCCATGGGAGGTTGTGGCCTCGCCGGT
GCAGCTGCAGGTTCTGGTCCCGCTGGAACCCCTTGCCGCAGATTTCGCACACGTACCGGT
TCGTCGCCATGAGCGCCCGCGGCGACAGCGCGATCACCTCCGCGTCAGGGTCTGTACCGG
CCGCAAAACGAATTGATCGACCGACCGGTGAATCCTTTGGATCAAGAACCAAAGAACCAA
GAAGGCAAGAACAACATATATTCCTAGTTGGATAAGTCGACCAGAAGGAGAATTCACCTG
GATTCCCCGGGAGGCTGCGCTTCTTCTTGGAAGGAGGCGGGAGGGGGTGGGAGGAGACGC
TGGTCTGGTCGCCGGAGGCGGAGGTCAGGTTCGACATGTTCTCGTCCGCGGCGGCAGCGG
CCAGGGCCAGCTGCTGCTGCTGCTGCTGCTGCTGAATTGCCGCAAAATCCTTGAGCATCA
TCTCGATCTTCTCTCCCCTCCCCTCGACCGATCAACCAACCAACCAGCTAGCTACTGCCG
AATTCCCGATCAGCTGGACACACACACACGCGCACGGATCAGATCTCGCGGGCGGGCGAT
CCGATCATGTGCGGCCTGGCCTGACGGCAGCCGCTGCATGCGGTGGTGGTACTTGAAGAT
TTGCAGCAGTTGCACTACCCACGCCCAGCTGCGGTGGGGACGCCCCTCTCCCTGAATCCC
GAGGCCGGAGACTGGTACCAGTGGCAGTAGCAGTACAGCAACTTGCTAGGCTCGCTGATG
TGGAACCATGGAGGCGGCTATTGTGATCAAGAACCGAGGCAGCCGATCGACTGAGCTGAG
CTGAGCTATCGGAGCAAACGGCCGACGAGCTACGCTGGGCTGCGCTGCGCGGGGAGCTGG
TAGAGTGGGGCTGAAGGAAGAAGCTAATAAGCTATGCAGCCAGGTAGGAGGAGTCAGCCA
CGCCAAGACTAGGGTTGATTGCTAGGTAGGGGGGGAGAGAGAGAGAGAGAGAGAGGAGAG
ATGCGGATGGATGAGGGAGGCAGGCGCAAGTGTGCGGCCATCCACCCGTTCCATGCCCGC
AATCACACTGTACTCCTACACTACTCTTTCTCTAAAAACAGGAGCCGGCCCACACGGGGC
GCCGGGGCCGCTGTCTTTTCCCTTGGCCTCTCTCAGTCTCTCTCTCTCTCTCGTGTGACT
TCTGATGCGCCGGACTCGAGAAATCCCCTACGCCGTACCTCCTGTCGCTGCTCGGCTAAC
CCCATTCCCATTCCGCGCCCTGTGCAGGGGATTATTACTAATAATGAATGGCGATCTTGC
TCCATGCCAATGCCTGCCATGGTGGGTTCTGCGGTGCCGTGCTGTGGTGGCGGCAAACAG
TGCTACAGGCCTGGAATTGTGGATCTTGAATCCTTGTGCGACCCCTTTTTTTTTTCTCCA
ACGAGCGTGTGCGTGGACGCGGCTCTGTTTTGCACCGAAAATTATTTAGAAAAAGTGTTC
TCGTTCTTATCCTTGTGCGAGACCAGCTACTTAATTTAGGAACCTCTAAAAAGACTTATA
TTTAGGAACGGAGGGAGTACATAGTTCCATATATATAGTTGAAATTGGTTCCTACATGGT
TCAAAGTTGAAGGTGGCTTTCAAGATATGCTTCAATTCAATGAGGCTATTAATGCTCTTG
TGGTAGTTGAAATTCTTCTCGGAGGTACAAATTTTACTTCGAGCAACATGCAAGAGGCCC
CTCATTTAGAAAAGATAGGTTGTTGCTTTTGCTCGGAATCTTGGACTCTAAGTTTTTGCA
ACACTTATGCGTATGTCCTTTCGAGATCTATTTTTGATCATGTGTCATGCACCATTCAAA
GTGGCACATATATTGGATTAGCATAGTGAGTTCAAAGAAGTGGTGAAGAACATTTGGGAA
CATGAGGTATTGGCTGGAGATAGTGCTATGAAAACCGCTTATAGTTTAAAAGATTAAGGA
AAGTTCTAAATATGTTTTGTGTCTATATCAAAAGAGCATAATAATCATGATACTTTCTAG
AATGCGTAACACTTTCAAAATCCTTCGAGGCATATGCAGTATGATACTACGATGAGTTTT
CCTTGCACGAGAGTCATCACCCTGCATGGTTAGAGAAGCATTCACGGGTAGTTCATCAAT
GAGGTTTTTCAAAACCCATAATCCTTCTTTGGAGGCTTGTTTCTGCAATTGGTACCAACA
TAGCGAGCAAATACCTCTCCATTTTTTCTTGAACAATTTATAGTTCGAGTCAAATGGCAA
TCATTAGTACAAAAAGTAATGAGAAAAGAAAGATTGATAGGGGTTTCCTTTGCAAGAACA
CATTGGATCTTGAAATATTGCCCAGAGTTGAGTAGGTACCATGTGCATTTAAGTTTCTCT
AAAAACCTACCCTTTCACTTCTAGGGTTCTTATAAAGAATTGACTTCTTAAGAACATCGC
AAAGGGTTTGATGCTCTTTGAGACTTTTGAACATGTCTGTTTTAAGTAAGTTCTTCAATG
TAGCATTTTCATTAGTAAGAGCAGTGGTTTCCTCGTGTGAGGGGTTAGTAACCACATTAT
TGGTACAAGCAATATTCTCACGTGTGTCTGATGTTCCAGCAGCAGAATCAACATTTCCTT
GTTCTAAATATTTTAAACTATGTTGCAAGAAGATATTATCGTCATGAGCCACTACAGGTT
CGAGTTTTAGTTTCCTTTTGAGACAATCATAGGTAAGTATGTGGAGATCAGCTGAGAGAG
AATCATGTCTGTTAGAGCATATATCTCCATATATGGTTTTGGTAATTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGACACTTCTTGAAG
TCCATTTGTTG
