morexGenes - Barley RNA-seq Database

Contig contig_47232

Source Contig contig_47232

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_47232 (6525 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_47232

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63054	1	491 bp	MLOC_63054.1	Available	Available	None
MLOC_63053	2	1446 bp	MLOC_63053.1	Available	Available	LOC_Os02g02120.1, FRAME:+1, EVALUE:9e-96, 13102.m00146 protein OsWAK11 - OsWAK receptor-like protein kinase
MLOC_63055	1	731 bp	MLOC_63055.1	Available	Available	None

CDS Structure of MLOC_63054

CDS Structure of MLOC_63053

CDS Structure of MLOC_63055

Contig Sequence (6525 bp)

>contig_47232 6525 assembly3_WGSMorex_rbca.fasta
GAAGAAGATCCAGGACTACTTCCTCTTCAATCACGCCGCGCGTTTCATGATCCTCAACCG
CCAGTATCACAATCTCAAACAGGGTGACCTTCCCGTTTCGGAGTATGCCCGCCGCATGAA
ACTCCTCATGGATGGCCTCGCCGACATCGATCACCCCGTCTCGACAAAAATGCTGAATAA
ACATGCGTTTATTTCTATCCAATGCTAGTTACTTATCAATTGCATGGATGTAAAAATTAC
TTTGCCGGAAAGTGGAGCGTAGCCCCAACCAAACCGTGAAGGTCGCAGAATTGTCGTCGA
CGAGGGTGAGCCATGACCTCACCCGAGGTGGGTAGGATTAGATAGTGCTCGAGCTCGAGA
TGGGGAACTCGTCGGACGTGAGGTAGGGGGTAGGCTGGGGGAGGAAGGGTTGAAATCATA
AGTTGGGTGAGGAAGACAAACCATGTCGCTTGGATGAAAAGAAAAACAAGAACAAGAACA
TGAGGGTTTGAATCATATACTTGAGAGGAAGGGAGTGTAGATAGACTAAAACGAAAATAG
TTATTAGTCGCATGACCCATAGGTACTCCCTTGTTTTATTGTAACAGTAGAATATTTTGC
ATACAGAAAAATATGATGTTCCCTATGATCCATATGGGCCCATGTAGGTCGGCACATCAC
AACTTACCTTAAAAAACCTAGCACGACAGGACCCATGTCCATCCTTTTTATAAAAGGGTC
GTGACATGCTGGCTGGAAGGCCTCAGCTCGGGTATTGGCCTGACACGTGACTTAAAAAGG
GCGGCCTGTCATGACACGTCTATAGGCCGGCACATCTTATTATGAAGGCGTAAAGAGCAC
TAAAAAATGTCAAAATATAACCCAAATAGCAAATCATTAGTTATGGAACAATCTCCGCAA
GCTCCACTTTCACTATCTCAAATTATGACAAGTGTTACACTGAAGTCTTCATGTGCGTCA
CTTGTCGTAACCTGAAAGTTTTTCCTTTTTTTTATAGATTTGTGTATTCGAAAAAATTAT
CTTCCAAACTGTGTATCTAAATCTTAAATCATTTTCGGTGTTGGATTCCTCGCGTTGAGA
TCTTAATAACTAGATCCAATGCTGATGAACTTTTTTTTCATGAAAAACCGGAATAGAAAG
CCCGAACCATAAGCACATTTGTTTCTGTGTGCAAATGTCACTTTCACCATCTCGCGGAAG
CAAATCCGTCCTCTTGTGAAAAAAAAACATATGAAAAAGATACGACTGTATCTCTTGTGA
AAGTAAATTCGTGCTTTCATGGATAGCAAATCTGTGCCACTCGCACAGAAAACAAAACGC
AAGAGGCATGGTCCTGCCTCTGACGGAAGGAAAAAACCGTATTATTTACCCTTTTCAGCT
TAAGAAGGCATTTTTTAGGCAAGCTTAGAAAAAGCCGTACCGGGCTGGTAAGGCTCGGCC
TTACAAATACGGCCCATATAACCAAGTTTCGGGCCCATGCTGCGAAGTGATCCCTACCAC
TCAAAAAAAAAAAAGAGAGAGTGCGAAGTGACCTCCAGCCGCCATTGTCGCCTCGCCGGC
GACATGCCTGTCGCCGCCGATGCAGGTCCCTGCTCCATCTGCGCACCACCATCAGTACGG
AACCTCCCCTTCCGGCGAGTTTCCGTGGCCGGAGTTCTGTCCCCTCCTACTGGCGCCGGC
GCCGGCACGTCGGATCCGGGCATCTGACTCTACCCGCCTCCCCCGCAGCCGCGTTCCGCA
GTCGCGCCGTGCTGTGCTCAGGTCTACCAATCATGCCCTGTAAGGTATGGCGAACCCTAC
CCCCCTGTTGGCTGTTGCTGGAGTTTGTCTTTGTCCTGTACCTTGGATGTAATGTGGACT
CGAAGCCTTAGGAGATTATATTAGGAGGAATTAGGAATTAGGAGCAGAGATGTAAGCAAG
AACCCAAGATATATAGATAGTTTGTCGTCTCCTGCATTGCCGGAACTACAAAACATTCAG
TTGCATAGAGGGGATTTTCACTTCACTGCCTTACATGTGAAATCAGGGGGGCAAGTCAAG
TGGGATGGAGGTTTCACTGTGATGGCATGTAGGAATCAAATTCATGGAGTGGCGGCGTGG
AAGAAATAGGCTGTTTTCCGATGGCAAATGACAGGAAAATATATTACCACATAGAAGCTG
ATTTCTCACAATTCTTTGTTTCCGATGTCATCAGGAATGTGGTGTATAAGCACAAGCAGT
CATCAGGAATGTGATGGTGCTACCCCCAGGCATCCAATGTAGTATCAATTTAGCTTTATG
CGTATAGAGCCACAAACAGGCGACTAATATATCTATTAAAAATATATTCTGTTCATATTC
ATTGTGTATTCAAGTTTTTAACATCGCAAAGGATAAGCAACTGATAGAGATATTTCATCC
GAAAAGTTGCATATAAAGACCCAAAATGTAAGGATGTGCAAACTGAAACAATCACTAGAA
ACAAGCTACCATAAAAAGTTCTATTTTTTGGGGAATTTACCGTAACAAGTTCTGGAATGA
GAACTGAAGAAAAATGGAGTCTGCAGTAAATACTGAATGGCGGCTTCCTTTTTATCTACA
CCCAGCATAGATGCATACTTTGTCATGTTTTTCAGTACTCTTTCTTTCTTCGTCCCTAGG
TTAATTTTGAGCTTCAATTCTTTTGTGGTTAATATGGACGTGAAATCAGAGAGAACCATA
GATAGATATTCAAAGTTCATGTTTTACTTTCAAACATGGGCTATACCTTTGCTCTCTAAA
TCTGATTCCAAGATTGTTGGGTCAAAGCGTTTGCAATAGTGGACTAAACTCCTAACTAGC
TACTGATATATGTCAAACAATCAGGGCTTATAGGGAGTATCCCCTATTATTTGTGTTCGG
AGGAATGACCAAACACCATATTCTAGAAGAAAGCAAATATTTGGAATTTATTATATTTTA
TGCGGGGCCAAATGAATCATATCAATTACTTGGTCGTTGCCTTACAGGACAGAAGCTCTT
ACTATTTTTCACCGCCACCCTAACCCTGCAACATAGTAATACTGCTTATGGGTCTGAGTC
CTCTGGGAGCATCCTCATGGCGCGGCCTGACTGCCCAGACAAGTGTGGTAAAGTCAGCAT
CCCGTACCCGTTTGGCACCGGAAAAGGCTGCTTTCAAGAACACTTTAATGTCATATGCAA
TGAGACCGGGGCATATCTGGCCTCAACCCAAGTTAGGGTACTAGAGATCAATCTTATTCT
TGGTGAGGTTCGTGTTCTGAACCCACGTATAGCATGGGAATGCAACTACACCGACGGCAC
CAATAGCAGTGATTCCGATGGCTTAATCCTTGGTCCTTTTCATAAGCTTTCCTACACAAA
GAACAAGTTGATATCGATCGGTTGTGCTACAATTGGATTCATCTTAGGATTCACCAAGGG
CGAGAACCAGCTTTCATTCCCCATTGTTAACTCATGTTTTTCATTCTGCACTGATGCAAG
TAGCATGGATGGTAGCACAGAGTGCGTTGGCATTGGTTGCTGCCAAACCTCCTTTCCAGG
AAACATCAGCTCCTTCTACACCGGGTCTGGACCATTAAGAATATACAACTCTAGCACCCA
GCCTTTCAGCCCGTGCAGCTACTCGTTTGTTGCTGAGAAGGACTGGTTCAAGTTCAATCA
TTCATATGTCAGCTCTACAAATTTCGCAAGTAAATATACAGATAGGGTCCCTTTGGTACT
CGATTGGGTTGTTGGTAATGAAAGTTGTTCGGAAGCCACCAAGATGGGATCACAGTATGC
CTGCAAAGCCATGAACAGTAAATGTGTCGATGTGCCCAATGGCCCTGGTTACCGCTGCAA
CTGCACTCAAGGTTATGAGGGAAATCCCTACCTACAAGGAGGGTGCCAAGGTACGTATAT
GCGTCTCGCAGAATCAACCTACTCTCTCTGTTCTATCAGCTTTATTTATGGAATGGAATA
TTCTGTTTATCCATGTTGACATTCTCCTTACTTCCTTGAAATGACAGACATCAACGAGTG
TGAACCTCCAAACCAGTCCTTGTATCCTTGCCAAGGTAAATGCAGAAATACCCTTGGAAA
CTACGCCTGTTTCTGCCCATCAGGATTCAGGAGCGATGATCCAAAGAACATACCCTGCGT
TCCAGCTGACCCAAAGAAAGCTCTGAAGGTGGTCCTAGGTAATGTGATTGTTTGCAATCA
GAATATTTTGTATCAATTATACAAATGCAAGTACAGTTTATATACATGTCATATGGCAAA
GCAATGGGCAATATGTTGCACTGTTTTTTTAGCAAAATGTGGGCACCTGCTGCTAGTTGA
ACTGATGGTAATTAGCTGTCATGATTTCCAGGCATATCCTTCAGTATCATCTTCCTCATG
GTTTGTATCTTTGCTCTACGTGCTGAGTATCAGAAAAGGAAGCTTGCGAAAGAGAAGGAC
AAATTCTTTGATCAGAATGGTGGTCAGATATTATATCGCCAAATTATGTCAAAACAAGTC
GACACATTGAAGATATTCACTGAAGAAGATCTGAAGAAGGCTACAAACGATTTTGACAAG
AGCAGAGAACTTGGCAGGGGTGGTCATGGCACTGTCTACAAGGGCATTCTGAAGGATAAC
AGGGTAGTGGCCGTGAAACGCTCAAAGATAATGAATGTGGCCGAAACTGATGAATTCGTG
CAGGAGATTATTATTCTTTCACAGACCAACCACCGCAATGTGGTCAGGCTTCTGGGGTGC
TGCTTGGAGGTAGAAGTCCCCATACTGGTCTATGAATTCATTCCAAACGGCACTCTATTT
GAGTTCATCCATCGTAGCTATGGGAGTCCGCCTCCGTCTTTGGACACTCGTCTCAGGGTC
GCTCAAGAATCCGCTGAAGCACTGGCGTATCTTCATCTGTCCATGAACCACCCTATAGTG
CACGGGGATGTCAAGTCTATGAACATTCTCTTGGACGAGAACTACATGGCGAAGGTGACT
GACTTTGGGGCATCAAGGACACTCCCCAAGGACGCGGCCCAGTTCATGACATTGGTGCAG
GGCACCCTGGGTTACCTGGACCCCGAGTACTTGCAGGAGCGGCAACTGACTGAGAAGAGC
GACGTGTACAGTTTCGGGGTTGTGCTGCTGGAGCTGATCACGGGGAAGACGGCCATCTAC
AACGACGGGCCCAAGGAAGGCAAGAGCCTCGTGTGGTCCTTCCTACTCGCCATGAAGGAG
GAGACCCTCGAGGACATCCTGGACCCGAGCATCGTGCGCGTGGGGACGGAGACGCTGCTG
AGAGAAGTGGCCGAGCTGGGGAGGATGTGCTTGGGCGCCAGGGGCGAAGAGAGGCCTTCC
ATGACCCAGGTGGCCGACAGGCTGAAGGCCCTGCGGAGCACCTGGAGGGAAGAGCTTGTG
CTGGACCGTGCCGTGACGGAGCATATGGTCGTGCACATGCCACCTGTGGATGCTCCGATG
CCTTGGGATCTCGCGTCGTCGTCCTCGGGTGCCCCCTCGACGGTGCCGTACATGTCTGGA
ATGGGCATAGAGGTGCCCAGATGATGAAGTTTCATGTCTGGAATGGGCATAGAGGTGCCC
AGATGATGAAGTTTCATCTGAACCTTCCTTTGGAGCAGTATTGCCAGGAGAAAGTGTGTG
CCTTAGAGGCTTAGAGCTTCAGGGTTTATACCGTCCAGCAGAAATGTGCAGGTAGCTGTG
CTGTGTTGGAGGTACCAAGTATGTACGTAGAAGTTGGAATTTGTTGCGTGTTGTGTGTTC
CTGTGTGGAGTTTTCCATGACATTTGACTTGCCAGTTTCTGTGTTCCTTTCCAGTATGAG
AATTCGCATGCAGTGTTGTTCAACTACTCATTAGAATTCGTTTTGGCAGCGAGGTTAGCT
CGGCCGGCACTGCAGTAATCATAATTTTGAACTGGAGTAATCATAAACTGCAGTCAAAGA
TGGCAATTATACTGCAGTCTCCTAGAAATTGTGCTCCTGCAGATACTCCCTGTTTGATTA
AGTGAACACTGTTACTCCTCTGCTTGAAAAGATACTCCTGTGCACTGAACACTGTTACTC
CAGCAAGTTTACTGCAAGAAAATACTCCACATTGTTATCTTGGCAGGAATCTGTATTTTT
TATCTTCAGAAATCTGTATTTTTTATCTTGGCAACGCATAAAAGGTACTGGCTGCACATT
GTTAAGTTCAGTTGGTCCTGAAAAAGTGAAAAAATGCTGAGTGAGCCGTGCATGAGGAGG
CGCCTCTGACACTGATCGATCCCGGTTAAGTTCGACCGATAGCAGAGGGTCAGGGCAAAC
CATCGCAGGGGCAAAATCGTCCGCAAGAAAATATGATTGGAGGGTCCTACAGGTCGGGTA
TTTTGTCAAAGGGATGGTTAAAGGCGTGTCATTTTGGCAATAGAAGCAAAGTGTTTTTAT
GGAACAACGACAAAAAAAAAATGATGCATCATTTTTACAACTATGCATGTCTAACTACTC
CCTCCGTTCCTAAACATAAGTCTTTATAGAGATTTCACTAGTGGA