morexGenes - Barley RNA-seq Database

Contig contig_47084
Source Contig contig_47084
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47084 (8365 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_47084

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62908	1	624 bp	MLOC_62908.1	Available	Available	LOC_Os05g48320.1, FRAME:-1, EVALUE:6e-61, 13105.m05135 protein 60S ribosomal protein L37a, putative, expressed
CDS Structure of MLOC_62908

Contig Sequence (8365 bp)

>contig_47084 8365 assembly3_WGSMorex_rbca.fasta
CTATTCCTTTCTTTGCATCAAGGGGCTTCTCCTCACAATCCTTTGGCCAATGCTCTTTGT
GGACTATAGCTGAAATATACTAGGTGAAAGTGTTAGTCCAAAAGACAATGTATGTTGTCA
TGAANTATCAAAAACACCAAGGGAGCATATGTGCTTTCAAACACAACTCCGTTGCAAATG
GACACATACAAATAACATCAAATACAGAAAGTTATTCCAACCACCCCGTGCACAAATACA
TTGTTGTGCAAGGCTTTGCCTTAGCCCACTTCCCTATCGAATTACTCAAACATGGCGATT
GGATCGCAAGATGAACTCGTTGATGACGACATAAGGGTGAATGATTGACTAGTAATATGT
CTTACAATAGTTGTCGAGTGTAATGCACCGATTACAACTATGACTGACTTGGAGAGAATG
GTTGTGATGATGAAGGCAGCGGCGGCGGCTATGGAGATGAGATGGGAAATGGCGGCGACT
AGGGTTAGAAGATGGATTCTAGTTATCTATTTAGAAAATGGTGGCTCCCTTGTTGAATTT
TGGCATGGACCCCTTATAGAAGTTGACCAGGTAGACTTGTGGAGTCGACTGCTTGTGGTA
CAAGCACTCATATGAGTGGATGCGCTCGTGTCGTGCGCCATCTTGCGCTCTGGATAGCCT
GTTGCGCCTCCAATTGACTTGCCTTCTCCTCCACACTCCTTGTTTCCTCCTATATGATGA
TATTCTTCCATATATGATCCCATTTCATGTGCAAACACATTAAGTAAAGTTTTTTGTAAT
TTATTGCATTCACTAACCATTAGTATCAATATCAGACTGATTCTCTAAGAAAATTCAGGA
TTATCCGATTTAAACAATCCTGGAATGAGTGCAAAAAATCGCCCATCAAAGACGCACGGC
CCGATTTGCCTCGTCTCTCGTGGCCTTAGGGCCATGCAGTGCTGGTGGATCTAGGCTATT
GCCGGTGAGAGGGCTTATGCTCCATTTTAGGTGTTTTTAGGTTTTTTAGCATTTGTGTCA
TGCTTAGTAAGACGAAGCGGCAATGACCCTCTAAAGATGGAATAAGGTTCTCTCTGCCTA
GTCATCGCCTCGGTAGTCCATCAAGTGCCACCGGAGGGGGTGCGGAGGTGAGCCTCCGTC
GGACAAGATTCGACTGACGCTTGTCTTCGATGGATCTCCTTGGTTCAGTCCTTGTTTATC
TCCGTTCGTGTGTCTTCAGGTTGGATCCTTCTGATCTATCATTCTCTTCGTCAGCAAAGG
TTGTTGTTCCCATGTGTTGTTCCTTTAGGGCATTAGCATGATGACTATTCAGTGTCTACT
ATAACAAGGTTTTCCAGGCTCTGGTGAGGGAGGGGCAATCACGACGACGCGCCTTCAACT
CACTCTAGTACTTGTAGACGCCGCTAGGTGTTCTACGAACATGAATGTAATTTCTATTGC
TTCTTGTGTTTGTACTGCCTTGATGTGATGAACAGATCTCATGTTTTTCTCACCCCAAAA
AATGTTCGAGCAATCTCTGCAAGAAACATATAACAAAGAATCAAAGGCGTGTGAGAAATT
TGATTGCATCCATCAATGTATGCAACAAACGATTCAAGAACCGAATGCTTGAGCACGCTT
TGCCAAAAACAAAGTTGTGCGATTTAGGGGAGAGAAGGCATTTTGCATGGTCACTCATTT
TCGAGGAATCCCTCGGTTCTAAGAATATGCCTCATTTTCAAGGAATTGCTAGGTTCTGGG
TAATAAGGGAATATGTCGTTCCCTTGAACTGGTGGGTTCGGGTCCTTTCGACAACACAAA
CACAGGAATGGCCTTTAGGGACGAAACTGACCCATTACGTCCCACCCGACGAATACACCA
TTAGTAAACAATGCATGCTAACAATGAGGGCATCTCCAAGGTTGACCGGTAAATGGACAC
CGTAAATGTATGTTTTTATGTTTGGACATCGTTCGCGGACATGATGCGGGAGGGAGTCAT
CCAATGATGTTTATAAATTAATCCTGTTGGGAAGAGAGAGAGTAGAGGGAGACCATGCAT
GTGGTGGGATATTGTGATGTGATGTCCGGTTGGGGGGAGAGGGGGGAGAGAGAGAGGGTA
GGGGACCATGCATGTGAAGAGAGAGAGAGAGAGAGAAAAAAAAAAGAGGACCACATGCAG
GCTTTTTGTTGATCAATTGCATGTGCGGACTCTCGCATAGCTTCCCCAAGTTTGTTCGGA
TTTGCCGGAAAGCAGGGGTACGAACTAGTATGAGGACGTTTAAGGGTTCCCATTGGATGA
CAAGTAAGCAAGATTGGTTCGGACACCATGGTCGAGACTTTAACCAAAGCTTTGAGCATC
CACTTTGGAGATGCCCTAAGAACTGAAATATTGCACTTCGCTTGAGTTAGTGTCACAAAA
CTACTCTAACATATCATGTAAAATGCGGTATCGCGAATTTCGTTTTAGGATCATGTAAAA
CGAATTTGCGGTACCGCAAAAGGCACGACAGAATAATCAAGTAAACTGTACTCATATTTG
AAAACTTAAACTTCGCGCCATGATAGTTTATAGCCGAAGTTCATACGTTCAAATATACAA
ACTTAAAAACATAGTACTAGATAGACCTAATCTAAACTAGTTGCTTGACGTTGAGGTAGA
ACTCGGTCGCATACCCGTAGATACGCGAACTAGTGCCCTTCCTTCGATCTTTGCCTCGGG
GGGGCACTTAGAGCATCTACAACCGTCCGACCCCCAACGGGCCTGAAATAGCGCCGCCTG
GGGGTGCGCCGGCGGAAAAAAGGACGTGGGGGGCTCGGCTTCCCATCCCCCCGCCCCCAA
GGGCGCCCCCAGCCGCCGGTTTCGACCCACTTTCGACGCAAACTGGCCCACTTTTGGCCC
ATATTCGGCATGCTTCGACACAAATTGAACAACAATAGTTATTTTTTATCACATAGTTCA
TCACAGAAATCAATACAAATCAAAAAATAGTTTAACAAGTCAATATAAATCTAAAATCGA
GCTAGGTGTTGTCCTTGAGCCTCCATAAGTGCTCCACCAAATCGCGCTGCAGTTGTTGAT
GCACCTGTGGATCTGGGATCCCCTGATGCATGTTGAGGAAGGCGGTCCAGGTTGCCGGTA
GCTGGTTATCAACTTGGGCAAGAGGACCTCGCTTGTAATATGGTTCACTGTCAAACACTA
GCTCCTCCTACTCGCTCTCAATGATCATGTTGTCTAAGATGACACAGCAAGTCATGACAT
CCCACATTTGATCTTTCGACCTAGTCTGAGCGGAGTACCGGACAACAGCAAAATGAGATT
GAAGCACACTAAATGCCCACTCGACACCCTTCATGCAAGCTTCTTGACGCTTGGCAAAAT
AGGAGTTCTTGCCTCCTCGTGCAGGATTTGAGATAGTCTTCACAAATGTGGACCATCTCG
GATAGATGTCATCTCCTAGGTAGTATCCCTTGTTGTAGTGGTGCCCATTGACCTCGTAGT
TAACCGAAGGAGCATGACCTTCAACAATCTTGGCAAAGACATTCGAACACTATAGTACGT
TGATGTCATTGTGAGTTCGTGGCATATCAAAGGAGTGCCAAATCCATAGGTCATGTGTGG
TCAGTGCCTCAAGTACCACACTCCAACCTCCTTTGGCGCCTTTGTACATCCCTTGCGAGG
CAAATGGACAGATTTTTCATTTCCAATGCATGCAGTCNATACTTCCAAGCATCCCAGGAA
ATCCTCTTTCTACATTCTGTGCTAGGATCCGAGTAGTGTCTTCAGCATTTGGTGATCACA
AATAATGAGGTCCAAAAACTGCCGCCACTGCCATGCAAAACTTGTAGAAACACTCAATGG
TGTTGGACTCGGTCATGCGTCCATAGTCTTCCAAAATATCACTGGAGCAAGCATCCTCAT
AGCTGTCGGGAACTTCTGTAGCGAGGTAAATCCAAGTATGCCGGTGCAATCCTTTTTGTA
GTTGAAGTAGCTGTCGAACTCCCCGGTGGAATTCACAATCCTGAGGAAGAGCTTTCGGCT
CATACGATAACGGTGCCGGAATACTTTATCGTCGTGCAGAGGAGCGTCGGCGAAGTAGTC
GGCGTAGAGCAAGCAATAGCCTTCGAGTCGATGCCTCTGATTTGCCTTCACTCGACCAGG
CGCCGAGCCACCTCGCCTCGGCTTTGCATTGCTCGCGAACAGGGCGGCCAGAGTGACGAG
GACCATGAGGTGCTCTTCATCCTAGGCGTCGGCATCGGCTTCCTCCTCCAGTAGCACCGC
GAACGCCTCCTCGTCGTCGGAGTCCATCGCACGGACAAATCGCCAAACACCTAACGTGCG
TGGTGAACGCGCAACAACGTACATGCCCGGAGCGCCGGAAAAACTTGTCAAGAAGCGGGG
GGCGAAGCCGCGGCGAAACCTACATTCGTCGACGGGGAGATGGCCTTTGTAGCGACGGTA
GGTAGGTTGGCGACGTCGGAATCGACACGATGGCAAAAGTCGTGGTGCACCAGGGGCGGA
CCTGAAGAAGAAAAGGCATTTTTTTCACCACAGGGGATTGACGCGTCAATTTTCCTCACC
AACGCTCCTAGAAATGGTGGGGCCTGTTGGGGACGCGGCAGGAGATGCTCTTAGCGGTGA
GCAAGAACTTCCACAAGCTCGTCGAAGCGGCTCCACACTGCCCTCTGCCAGCCATATCTA
CTCTAAAAGGGCTTGTGCGCGCAAGAACCAGACGTCAGGGTAGGGAGGATCGGGCGCTTA
AGTTAAGGGATTGCAACTGAGCCAGGTGGGAGAAATGACGGATGCAAACCCTAAACCAAC
CACTCTAGGGTAAATACAGGCCGCCTATAAAAATTTACAGACCATGCCTTCTTACCGTAT
CTGTTCTGGCCAAGAAAACGCATTTTTTACCGAATCTCTTAGGGCCAAAAAAAAAAGAGC
CGATCTTGTAGACCCCCCAGTGTTATAAGAACCGGCAAGGTTTTATACGATCTGCTAGAG
TTGCTACAAGCCCAGAGAAGCATCATGCAGTTCATCATACAAAAGGGAACAACCAACCAA
CTGGAAGTCCTAGTTTGAGAAGGTGGGCTACATTTCGCTCGTGCAAATCTTAAGAGCTGA
GTTCGATACCTAACCGTGAAGACAGCATGGACTGCAGAAGGCAAAACAGAATCCACAGTA
AACCAGTGGAATCAGGCAACAAAAGGGTGGAAGAATAACATAACAGAACATCCATGGCAC
CAAGTACAAAGATATCCTTGACTAAACAGGCAACGGAACTGAATCCAAAGTATCGTCTAA
ACTGCAAAATCCCAGATGATTCACTAGGACAAAACACTAGTAACAACTTATGCTTCAGTC
TGTTCCCTCAAGCGACGGATAGTGCTCCTGACAGTGACCGCGCTGGCAGTGCTGCAAACA
CATTGTAAGATCAGCAACATAAGATGGGCAAACCAATGGGTAATCTGGAAAGCATAAGAA
GAAGATGATGAGCACATACTTCATGGTGTAAGCACCGCCAGCCTTCACCTTCCCACAGTC
CTTGCATCCCCAAATTCCAACTGCTTTCCTCTTCACAGCAAACTGGTAGGAGTATAGAGT
AAAGCAAGAATCAAGACAGTATTTTAGGGAACCGCTTAAATATACTAAAATAAAGAAAAA
ATGGAGTGCTACACAGATCCAGCACAGATAGCTGTGATCAAACTACTCTACAGTTGAGAA
CATATGTCCAAAGTAGATGGTTCACATAATCACATAATAAACAAATAAATGAATCATTCA
CATATGACATAGCAAACTAACAAACAAGAACAAATTAGCATAAATAAATAAATGCAATTC
ACATAAAAAAGCTGACAAACTAGAACAGATTAGCATAGCATTGCAAAATGAAACTACCAA
AAGGCATATAAGATATTGTAGCTCAAGAAATGAACTTTAGTTCATGAAGGACACAGCAAA
ATAATGCTGCCAGAGGAGGAAAACTTTAAGCAAGGAAAACAAAATATCATGGTTAACATC
AACAATGATCAGGAACCTGGGCCACAACTGAGTGTACGGTATAATATAATTCACAAACTG
ATATGAAAGGATACACAAGCAGGGTGACAGAAGATATACCTTCCCACAGAACTCACAGAA
GTACTTTGAGTGCTGAGACACCTCCATCTTCTTGATCTGCTTACGCAGACTGGCACCATA
ACGTGTACCTATAGTTGTGTGGGTTGGTTTCAGTTGGTACCAAAAATGGATGAACAAGGG
AATTAGCAATGGTTTAGCAAAGCTTCATAGTCTCATACCATATTTGCCGACAATTCCAGC
TTTCTTGGTACGCTTCGTCTGAGAAGAAATGTCAACAAAAAATTAAACAAGTGCTTACAA
AAACTAACCAACGTTAGACAACATGGGTTGTTGCGCAACTCAAAAGTACTAAACAGCAGG
GCAGGTTTGATGAGTACAGTATCGCTTATCAAATCATCAGAGAAATGATTATGACAACTA
AAAAATTGATTTTCGAGACAATGCAACTAATAACATTCCACTACAGCGTCATCATCTCAC
TCTGGGACTTAGAGAGCCCATCGGGACAGAAGCTAGCGTTAACTTTTGATCCGAACTACT
CCATATTATAAATAATGTTGTTACTATATCAGTCACCCACGAGTTCTAATCGAACGAAAG
AACAGATGATTGGCAGGAAACTGAAGGACATAACGCGAATGGACCAACAGGATTCGACGG
TGCTCGACTTGACACGGCTAGGAAGCTGCGGCTTAGCACCCAGCACACGCTAGGATCTCG
CCGGAACAAATCCAGCAAGAATACGTAACCAGGATCCTCTGAAACGAACAATTTCTACAG
TATCCCGCAGATCTACGCGGACAGTCGGCAAAGGAAGCATGTTTTGGGTGCCTGGAAGAA
AGGAGGGACGGAGAACAGAAGCGGCGTACCATCTCGTCGGCGGGTAGGAAGCGTGGGCGG
CGAGCGGCGGCGAGCGGCGGCGGCGGCGAAATCCGGGAGACGGGGGCGAGCGGCGGCGGC
AAGGACAGGGATTTGTGGAGAGGCAACTTATATATGGGTGACTAGGGTTTTGAGAGGTAC
GTCTATATCGGCCACTTGGGCCAACTTTTGGGCCATCTTTCTTCCTGGGAGATGCTAATG
GACCGGTCCACCACATCAGCCCACGTTATTTATTGACAAGTGTATAAGGGCATCTTCTAT
CTGAATACCCACCCCTCAAAAATATATTCTATCTGAATTTCCAAATTTCACTAAAAAACC
TGAGTTCAGAAGTTTCCAAGATTTGTGTTTAGCAAGAAACAATATTGTAAAAAATATGTT
TGCAGTAGACATTTTCAGATAACTTGTGAAAAATGTTCATCCAATTGAATAATGCTAGTA
ACAATTTTTGCATATTCGAGACAAGACTATTTTGGGGACGAGTTGTGGAGGTGCACAAAT
ATTATATTATAGAGCAATACTACACCTAAGGATTTATTCTTACTAAGGGGATTTACGGGG
TGTGGTGGAGGGCCACGGTGGAAATCACGGGTGGGCCCATCAGTGGAATTCGTGTGGGGG
AGGGGGGGAGGGCATCTCCAAGAGCGACCCGCAAACCTTGTGCATCCGTACGTTGTGTTG
TCCGGATAGCAAAAGCCATCCAATGCGGGCATGTATCGGTCCGTCGAGCGGTCTAGAGGC
CCTTCTCCTCTTTACTTTGCATCCGCACTCTCCACCTTTGTCATCACTGTTGTACGTCTT
CGATCGTCATAGAGGCATTTTTGAATGTCCGCAACCACCACCGACGCGAACACTCGCCTC
TACGACAGTGTTGTCCACCCTAGAGTCATCTGTACATAGATACATTCTGCCCCCATATAT
ACAACCTTCAAGGCGGACACCATGCTCGCAAGGTGTTCGGTCAAATGCCGTTGAGCCTTT
TTTGGAACGCCCAAGTCGTTTTTTAGAGTACAAAGGATGGCGAGCTACTCGGGCATGGAG
GATGAGTTGTGCGATGGGTGGTTGACCGTATCTGCGGATTTCGCATGTAAGAGCAGAGAG
AGACTTTCTAGCAGCAAGTGCATGAATCGTTTCTTCGGAGAAAGCACATTGCACCCTACG
ACATGTACATCATTCAAGCACACAATGTGATGTCGTTATCGTATCACTAGTACGCTAGCC
GCACCAGAGTTGCCAAGTTTTGTAACTTGGTTCGTCAGCTCGAGGCAAGGTGGCTATTGC
ATGCGGCGGAGGACGAGATCGTAAGTTTTGCTTCCTCTTGCTCGCTGTCGGCGATGCTAG
GTCGACACCTGTGGGAATCAATGTGAAACCCTTGTGATCGTAGGGCGGGGAAAGACGAGG
TCAGGAGCAGAGCTAACGATCAACA