morexGenes - Barley RNA-seq Database

Contig contig_47053

Source Contig contig_47053

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_47053 (5808 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_47053

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62873	2	1745 bp	MLOC_62873.1	Available	Available	LOC_Os08g13920.1, FRAME:+2, EVALUE:9e-134, 13108.m01491 protein glycosyl hydrolases family 16, putative, expressed
MLOC_62874	3	1165 bp	MLOC_62874.1	Available	Available	LOC_Os05g22730.1, FRAME:+1, EVALUE:6e-35, 13105.m02300 protein expressed protein

CDS Structure of MLOC_62873

CDS Structure of MLOC_62874

Contig Sequence (5808 bp)

>contig_47053 5808 assembly3_WGSMorex_rbca.fasta
GCCTTCGATCCAGGCGAGGAGGTTGTGGCCTCCTTCGAAGTTGGGTGTTGGATGCGATGT
GTCGGGGTCCGTAGGTGCATGGCGACGGCATGCCCCGCTGATGTCGGTCCCTCTCTCCTT
TGTGCCAGCGCGATCTTGCTCCTAATGCTACATTCTCGGTCGAGGACCTCGGCATCTTCG
GCTTCACCCTTCATTGCTTATCTTCAGTTACCGCGGTGTGTGAGGCTTAGTTTCATGTTG
CCCGTCGTTTTTGTATCTTCCGCCGTGAATTTTCTTCTTTTTGCGTGAGGGCGTGTGCTT
ATAATCCTGATCGGTTGATGGCTTTGTTAATTCAAAGTTGGGCTAGGCTCGAGCCTCATC
TCGGGCCTGGTTGATGCCTTTTCTTTAAAAAAAATGGCATCAAAACCACACCATTACAAT
TATAAGTCACACGTACTTTTGAAACATGGACACCTTCTGTTTTTCGTTTCAAAACAACAA
GCACCTTTCATGTTAACCGTGTGAACTATCACCCATCTCAGCAGAATATTGTCGAGTATT
GAAGATTACTCTGTCGATCACATCCGCGAGACAAGTGTAAAAATGAAAAATAGCAAGCAC
AATGGAACGCTTAGCGCTTGTTTATATATTTACTATGATGCATAGCATTGCCATTGGTGG
CTACAACCTTTTTTCATGTGACTCTCATCTCCCGAGCATCAACATCTCATAGGCAGGCAG
GGGAGAGCAGACTACAGAGGAATATCGAGGCCTTTCCCCACTTCGAAACCGATTATCTCA
AGAACACCTTTGTGCAATATCTGAAAAGAAAGAAAGATCAGAGCCCCTAGCTAAAACGCA
TGAATAATCACAAATGCATACATACAGTGAGGCAAATTCGAATTAAGACAGTTGTTTCGC
GATTGAACGATTGGTGTATAGCTAGATTTTCCTTACCAGCTCCACGATGAAGGTCCCGAT
GAGTCCCATCATGCAGGCCCTGGAGTTCCAGACCTCGGCGGTCTTGGTGAACCCGAGGAA
CGGCTCACTCAGCTTGGGCTGCGCCCGTGGCACCTGGACCTAGCAGGAAGAAACACCAAA
CTAAAGTTAAACCACTTGCTTATTTCTCAACTCTACACATGAATCAAATCAATCAAGTGC
AGAAGATTTCAAGTTAGCGCAGAGGCACGGGGAACGAAGGAAGCGATGGATGCAGGGACT
TACTCCGGCAGGAAGCTTGGCTGCCCGGACTCTGAAAGCGGCCGCTCTCGGTGAGCGGTT
AGCGGCAGCATTCTTCTGTCCGCGGAAGGTCTGGACTGCTAGGAGAGACGGTGCATGAAC
CATGGAGGCCACGGCCATTGCTGCACACTAATTAACCACGGCGCCACGGGGAGTTGGCAG
GGGAGGAGGAAGAGCAGGCCGGGACTGCAATGCAACAACGGCTGGGAAGGTAGAGAGAGG
CCACGGGAGGGAGGGAGGGAGGGAAGTCGGCTAGCAAATGAGCGGTGGAGGAGGTGGCCG
GGTTGCGTACCACGGTGCCACCAACCTTATCCGGCGGCATATGTGGCAATAAGTGGACGT
ACGGTGGTTGGAGCATGCATGTGTGCAGCTGCGTGACACCCAAACTTGCGTGCGTGGTAG
GGTACCGCAGGCCGGGTAGACGACATACGTTCCACTTCCACCTAGTAAATGTGCACGTCT
TGACAAATATGAATGTTCATAACCACTATAAATGTTGACAAATATAAATGCTAACAACCA
CTATAAATATTGACAAATATAAATTTTTAATAACCACTATAAATGTTAATAATTGTTGTA
TTAGCAAACTAATATGTGGCTGAATGGTTAAAATGACAAATGATAACACCAGCGCACCAG
AGTTCAAGTAAATTTTAAATGTTTTGCTAAGATTCCCGCGGCGAGTGGCCGACGAGATGA
CCCTGCTCCGACGAAGTTGCCTTGAAGCTGGTGGGGAGCACCACCGGTGTTGGAATGGGG
CAACATTGGACTCCCGGAAGCAAAGCCGGCGCTCCAGTAGAGCTTCACCGGAGTTGCAAT
GAAGCTTCATCAGATGGCGTCGGTGCTGCGTTTGGAGCTTTACCGGAGCTGCATTGAAGC
TTCGCTAGAGCTCCCAGTGCTGTGTTGGAGCTCTGTCAGAGTTGACCAGATCTGTCAGTG
CTACGTTGGAGCTTCGTCGGAGTTGCATTGGAGCTTCGCCGGACGCCGTCAGTGCTGCGT
TGATGCTTTGCTGGACGCCGACGGTGCGTCATGAAAGATGCAGTGAAGTTTTTGCCGGGA
TGCAGCAGCGCGGCATCAAAGCAGTTGGGCGCTTACTTCTACCGTTTTGGTGTTGCTATG
ATCCAACGGCCACAACGGGCTAATCGATTGGCCACCTAGCCGGATGATTTTTTATCCGGC
TGATCCGTAGCAGTCGCCACGTTTGGTTTCATCCGCTTCAGACCCAAATCACGAGTAAGT
TATTCGCAAAAAAAAAACACGAGTAAGTTTAGGACAAAAATGAATTTGAACGGACACAAA
ACCAAGAATAAAGCGGGTTATCGTTTTTTCAAGTTTGAACCCCGAGAGGATGTTGGTTGG
AGTTGGCCTGAGACACTGGGTTCGTGGCCAGTGAGGCAGCGCGCTCCACCGTCTCGCGTC
ATGGCGCCGAGTGTAGCGTAGCGTACCCACCGGTGGCGATAAGTATAAACGGCCAGCTCC
AGCTGCGTGATTCCAAAAGATTAATGGACGGGCCCCGGCAGCCGACACAGACCATGTGCC
CGCGCCGGCCGCATTATCGAAGCCGCTGCCGTGACGCCGCCCCACCGCCAGTTCACCACC
AGCTCCAGCACAACAAGAGCATCTAATAATAAGCTTCAGGCTAAAAGGGGAACAGCACAC
TGACACCGTCGCAGCAGAAGCAGAAGCAGAAGAGAAGCAGAGCAGCGGCGGCGACCATGG
CGCCAAGGTCAGACCTCCTCGCCGCGCTAGCGTTGGCCCTCCTCGCCGCGAGCGTCCTTA
GTACGGGGGCCAAGGCCGACTTCGACGACCAGTTCGAGGTGATCGGCGACCGCGACCACA
TCGGGTACCGGGACGACGGCAACGACAAGGGCCAGGAGTTCTCGCTGGAGCTCGACCAGG
AGTCCGGCTCCGGCTTCAAGTCCAAGGCCAAGTACCTCTTCGGCGAGTTCCAGGTCCGGA
TGAAGCTCGTCGACGGCAACTCCGCCGGCACCGTCACCTCCTTCTACGTACGAATTAAGC
CATCTCATCTTCGTCTTTGTGCTGTGCTGTGGTGTGCTGGAGCCTGGATCTAGCTTGGTT
GCTAAATAGTTAAAATGTTTGTTCAGCTGACCTCCGGCGAGAGCGCCACCCACGACGAGA
TCGACATCGAGTTCATGGGAAACTCGAGCGGCGACCCCTACGTGATGAACACCAACGTCT
GGGCCAGCGGCGACGGCAAGAAGGAGCACCAGTTCTACCTCTGGTTCGACCCCTCCGCCG
ACTTCCACACCTACAAGATCACATGGAACCCAAAGAACATCATGTAAGAATATGCCTCAT
TTCCCTCCCAACTAATCACGGATTAACTCCAACTAATTCATGGCATGGCAAATTGGATGT
CAGATTCGAGGTGGACGGCGTGCCGGTGAGGACCTTCAAGAAGTACGACGGCCTGCCGTT
CCCGTCGGCGCGGCCGATGACGGTGCACGCGACGCTGTGGGACGGCAGCTACTGGGCGAC
GCAGCACGGCACCGTCAAGATCCACTGGCGCCACGACCCCTTCGTCGTCCCCTACCAGGG
CTACCACGCCAACGGCTGCGTCCACGACAAGGCCACCAACAAGACCTCCTGCCCCGCCGG
CAGCGACGCCTGGATGCACCGCGAGCTCGACGACGGCGAGCTCAGCACCGTCGCGTGGGC
CGAGCGCAACTGCCTCTCCTACAACTACTGCGCCGACGGATGGCGCTTCCCCAAGGGCTT
CCCCGGCGAGTGCGGACGCAAGTGATGATGATGATGATGATGATTAGTGGCTGTCCAGGA
TTTGATTAATTTGATTCTTGATTAGTAGTGGTGCTGCAGAACAGAATTGCCCTTCTTCTT
GTTCGTTTCATGATTCCATTATTGGACATGTACATGTCTTCTTACCTTACATTACATTAC
ATTACCGGCCCCATTTTTCTCCCGTGTATGTACATTTTTGCAATCTTTAATTGGTTAGAA
ATGTGAAGAAAGTGAGAGGGAAAGGGTGTGTCCCTATAGTTGATCTTTTGGTTCATGTGT
TGACATTTTGTCTTGGGTGTCAGTCACATGCATTTTCTGACTTTTTGTTAGTAGAAAGAT
GAGGATTCTTGCAAGCAAATTATATGGTTGTTGAGTGGAAGGAAGGAAGGAAGCAGACAA
GCGAGGGTGGTGCGCATTGAGTGATGGCACGCACATGCTCTGCTACTCATACTCAATGGT
GGGGTGGCACGTTCCAGCGGCGCCACTGTCCGATCTACTAGTACCTCTCACTGCCCGCCG
GGTACTCTGTGGTACTACTAGCAGTTAACATTAACCATTGTTTGTTGGTCACTTGCAGTT
GCAGACGACGACTACTACCCGTTGTTGGACGTTCAAACTGTAATGACCTACTTACATGGT
CAAAATTGGCTTTGGCTGTATTTGCTGCTGCAGTGGCTCTCAAATTCAAAAGGCTGGGCG
TGGCAGGAACAACGGCGACAAAAAAAAATTAGTTCTAACCACAAAGGCTAAGAAAATCTT
ACCTGAGTTTAGAAAAAAAATTCAATCTAACATTTTTACGTGACATCAACGTCCCTCGCG
TTTGGGTTACACGGGAGACGTCATGGGCCCTGGCATTTGGTTTGGGCCCGCCCGATCCTC
CTCGTTGCTGCCCTGCTGATGTGGCAAAGGGTCAGACGCGAGGCACCCTGGCGCCTGGTT
GCGAGGCCCAAACGCCACACACCCTCGCGTCTGGCCCAGTTAAGTCAGCCAGCCGCACGG
GCCCGCCCCATCCGGTGGATATTTGTTCATCTCCAGCCAGAACGCATCTGGCTCTCGCCC
CCTCTTCGCCCTCACACTTCACCTCCCCTGATTTACTCCCTCCTCCATCAAAGTGTGTGG
ATCCAAGCCCCCCAATCATACTTGAGGTAATCTCCCCCAATCCTTCAAAAAAAATTAGCA
TCTTATTTTCAGAGTATTTGTGAAGAACGGGTGATGTTAGATAAGTAGATTATTTCTTAT
TTTTAGGGATTTCTTTGTAGTTGTTAGATTGTATAGGTTTGTTCAATATGTTGGTATATT
ATTTTGGCCTTTGGGGTATTTTGTTGAATATGTTAGTATATATGATGTGTTGTAGATTTT
GTTTAATAATTTAGTGTTGATATGATGTGGGCATAATGGATTGATTTTAGGCAACCAAAA
ATTATCATTGATGTGCTTAATTCATTATCGTTGTTTTAGATGGGGAGACTTGATAATGTT
CATTATATGGACAAGGAGGCATTTTTTACTAACAATGCCGATGGGGATGAGGAAGTCATT
GTTTTTTATACAAGCCCTAGCTACCATGAGTTTGTTGCAAAAGTGAGACATGTCTTAAAG
TGGATGGACCCCAATGATGGTGTTAAGTTAATAGGAAGGTATGATGTTAGAGTTGGAGTC
AAATCTCGCTCGAAAAGTATGCCTATCACCTCTGACTTGCATTGGGACGTGTACAAGGAA
CAAGTTGTCAAATCAGATGTCAAGTCAATTGAATTGTCTGCCACCAAGGTTGAACCACCT
CGGGCTGAAATTGACCTTAACTGACTTGTCTCTTCCCCAATGACCGAG