morexGenes - Barley RNA-seq Database

Contig contig_47035
Source Contig contig_47035
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_47035 (7624 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_47035

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62856	1	339 bp	None	Available	Available	None
MLOC_62857	4	1467 bp	MLOC_62857.2	Available	Available	LOC_Os02g07220.1, FRAME:-2, EVALUE:4e-96, 13102.m00818 protein peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
CDS Structure of MLOC_62856

CDS Structure of MLOC_62857

Contig Sequence (7624 bp)

>contig_47035 7624 assembly3_WGSMorex_rbca.fasta
ACGGTGGACCCAGTGGCTTCTTGGGGAGCATTGTGTCTCCACACCGCTCCAAAGGAGACG
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGGTTCCACTT
GCGGTTATCTCTTACCTTTACTTTGTACTTAGTACTGGTGTGGTGTATTCCTTGCTTGCA
CTTGTTGTCCTTGTTGTTAGCATNNTATAGGTTGCTCACTTAGTTGTTCATATTGAGAAT
CTTTTGTTGCTAACCCTAATTTGTTAAGATAGGCTAAAAATGATAGTTGCCTATTCACCC
CCCCTCTAGTCAACCATATCGATTCTTTCAACATCTTTATAGCTAACTATTATACTTGAT
GGCTATAAATTTGACTATAAATGACATGGCAACATCAAATAGTCAGCAGCTCGTTAGAGC
AAGTATAATAAGGTAGAGCCAGCAGGCTATAAGGATTAAAATATTATATTTTTGCTCAGT
TGAATGAGAGAGAAGAGGAGAGAGAAGGGAAGCGGACTGCAGATTAACAGTCGGCTGTAG
CACGGGCTACAAGAAATATTGCAAGGATGTAAGATGGGTCATGTATTAATAAAGTAATAC
TTCTTAGCAACTTGTTACTATACTTGTTAACTATTAGGTCGACTATATATGATATGGCAA
CTCCTTATAGCCAGTAGTTGGCTATACTATTAACCATGCTCATACTATTAACCATGCTCT
AACCATTCAACCATAGGTTGGTTCACGCTTCCTTTGCTTTTCATACAAGGCCACTTCATA
TTTTTATGTCTAACTTTGATCATTAATTTTACAACAAAATGTGAGTTATATAACACAAAA
AATATGTCAATGGATGCACATTTCAATTAACTTTGTGGATGCACATCATGCTTCAGTTTA
TTTTGAATTAAATTTCTTTTGAGGGAAGAAAGATTTATTCCATTGATATAGAGTTACTGT
TTGGACATAAGAATTCATCGATACGAGGCCCTTATGTGTAGCCAAACAACGGTGCTACGA
CTGTAACATGCAAAAAATATGTTACTCTATTATGATCTCAATGAAACTTCTTAGAAATAA
ACTGCCTCTCTGCCATGAAGGCCTTAATTTTCGTTGTGATATAACCAATGGTCCAATGAG
TCTTCATAGAATGTAGATAGCGTCGTCCACGAATCCGACTAATATAATTGGAAGATCCGA
ATGTTGTTAAGTTTGCGCGAGTTTCTCTGCTACTTCCTTCGGGTTTTTTAAATACAGTGC
AAACGGCAGACATTCATATAGACACGCATATACTCATCTTTAAGAACACGCACAATCTAC
CCCTATAAACATATCTGATACACTGAGTCAGCATATCATCTTAAGATTGATAAAATCATC
AAATGCATCTTGTAGTCAACGAGAATGTCTCCTTCCGTTGAATGCGTATCACAAGAAATC
CTGAAATAAATCCACGAGTAAGTGCCATCGCCAGAACTTAAAACATGATGGACTAGGGTC
TCACTGTCCACCTAACCATGCAACCATAGATTGGTTTACACTTCCTTGGCTTTTCATACA
AGGCCACTTCATAATTTTATGTCTAACTTTGATCATTAATTTTACAACAAAACGTGAGTT
ATACTCCTTGGATGCACATTTCAATTAACTTTCTGATGATATATTTTTTGTGACATAATT
CATGTTTTTTTGACCAAAATTAGTGAAAACTTTGACACGAAAAAGAAAATGGCCTTGTAT
ACAAAACAGATAGAGTATACTTTAAAAATAACACTAGGTTCCGTGTATACCTCGGCATAC
TTCAGGTCAGGCCGAAAAAAGCCCGATGATGAAAACCGAGACCCAAGCCCGACCTGACCG
TCAGGTCTAAATATTGGGCCCAAGCCTGAAAAAGCTCGACTGGGCCCGACCGGCCCTGCC
TGCCGTGACGTAAAATCAGTATTCTTCAAGTCCGAGCCTGGCCCGGCCCGTTCGCCGGGC
TCAAATTCAAAGCTCGAGCCTGGCCCGATGGCATGTTTAGGGCCAGGTATAGTTCCGTGT
CATGTCAATTTTTCTTCCCACCACCTCTTCATCCATCCTCCCACCCTACATCCGTTTTTC
AGTTTTTCATCTATTTTCTGGTTTTCATCAAATCAATGGTAACCCAATAAACCAGATCAT
TATATGGTACAACAATAAATACATGGTCCGTAAATAAATTTTTTCCTATAGTAAAATCCA
GTAGCAGCGGTCAGACATCTTTGTAAACTCAATAAATAACAATAAATATTACTCAATCTT
TTATCTTTGATAACCTAATAAAGCAGATCAATCACGGGCACATACCTATTTTATCAGTTT
AAGAAATGACCAAAAACCTATGCTTTATAACCAAAATATCATCTTATTTTGTCTATTCGT
TTTGCATAAGATTTGTTATGTATAGCCCTCTTATTGTGTTAAAAAAATATTTGACACCCG
TAGCAACGCACGGGCACATATTTAGTATTATGAAAGAACTACAAAAACACTCACAATACT
ACAGTTTTAGGAGTACATGCACACACTTTATAACGTGCACCGAAGATTAGAGTCGTGGAG
TTTTAAGATTGGCAATTTCATCACATTTGCCTCTCTATGGATGAAACCATTACCTCCTAT
TAAAATAATTACAATAATAATACATTTTGCTGAAATATACAAGACATCAAAGCTCATGAT
GTACTATAATAATAATAATAAAGCTCACGATGTACAATATACATTTGTGGCTTCGGGATT
CGCTATGACGTGGGATTCACAGTTGGATATAGCTTGTAAAAGCCATTCAACCACCATGGT
CCATGGTTTTGGCACCTGCAAACCTTCCATCCACACGGCCGTGCACGCATTTTGTACTTT
TGTATGCATCATCATGGGTAGTCCATGTGATGGATGGACAACATCACGTTGCAACTTGCA
ACCAGTATTCTAGTAAGTACCACAGAGCTAGATCTGATGCTAGCTTTGTAATTTGCTCCA
AAGCCAAAATAACTGGTTACAAAAGTTAGTTGTACACTTCAACACTTGCAACAGAGGACA
GAAATTTGAAAAAGAAAAGAAATCCTCAGTGAAGTTCATACAGTTTCTTTCCACGTGTTC
AACAATTCCAGTCGAAGAAGAACATGCTTCAGAGTTTTTTCTTCTTCTTCTTCTTTCTGA
GCGGTGATCATACTTTAGAGTTGGTTGCGATTGTCAACTAAGTTTTGTTTTTATACCCAT
AGAAAAAACTAAGTTTTTATTTATTAATTTAGTAATGTAAACGAACATGGCGAAACTATG
GCAAAGCAATGGATCACTCACCTTTTCTCTTCAGAAAAGTAGGGGCAAAGCGAATCATAA
TCAGGGAGACAGAGAGTGCTAAACTGCACATGGTACACACTAAACAGAATCTTAATCATG
GTTCCCGTGGATTCTCGGAGAAAGGGCACTGCTAGTTATCTATAGCCAAGGGTGTACCAT
CAGACACCACGCCGTAGGTGGTTCTCAACTTCTGATGAAGCTCTCTGATATACTCCCTCC
GTTCCTAAATATAAGTCTTTAAAAAGGTCTTATTAGTGGACTACATACGAATGTATATAG
ACATACTTTACAATATAGATTCACTCATTTTGTTTCGTATGTAGACACCTAGTGAAATAT
GTTAAAAGACTTATATTTAGGAACTGAGGGAGTAATATTCTGATCTTCAAAGGCAACTAC
TACCAGTCTGTTGACCAAAAAAACAAAATATGAGATGCCGATGTGAGCCAAGAACAGAGG
GGTTGAAAATAAATAACAAGCATGTGTACTAAGGGTTCGAAGCCAAATAATTCACTTGAT
CAATATTTACCATCGTTCTTTCTTTCTGTACATACTGTGCAGTCTGTATCTGTGAGAGAC
TCTGGTTGCTCAATAAGTGCAGAAAATCACCAACGTTTTTCGCATATAACATTTACAGAC
GGATGAACACAAGCAACAGCAGGTTCTAGCTCAGAGTTACTTTGAGACACAAGTGTACGG
TGCCAAAAGATTTCAATTATAGCGGTGATCGGCCCGTGGCCTTGGCAAAGAATGACAGTT
ATGTGTGCTGCCTTATGCTGATTAGCTCGATGTCGAAGATGACAGTTCCAAGGGTTGAAC
CCTCGCCATTCGCGAGGCGTGTCGGGTTGAATATGGTAGTGAATAATCTCTGCCGATCAA
AGAACTGCACATGGAAAAAAGAGAGGCAAAATTAGTACCTCCATGATGTCTTGTCAGTTG
CATCATTCTGCGACTCAAGTGAGAATTTTCTTGATTCTAATCATCCATATGCATGAGTTG
TTAAAACATTAGTAATACTTTCTAAGAGAAGACACCTCTGAATGCATGACGCGTGCAACA
GAAAGGAACAAGTTGGAAACTAGGAGTTGCTTATGTTGGAGAAACTCCAGGTGAGCATGA
ACAAAGTTTCATATTTTATATATTTAGTATTGTACATATGAATAGTTTTCTCAATAAACT
TGGTCAAAGTTTGCAAAGTTTGACTCTTCGAAAAAATTATACACACTACATTATGGAACT
GAGGGAGTACTATAACAGATGAAGAATTCTAGGATCTAGATAGCATGGAAGTTACATTAG
GAGGAATTGGTTCCTGTGATGTGTTTTGGTATCCCTGTGATGGCGGAATGACCACACGGC
GAAGACCACCGACTCTCATGGATTTCACTGCTGCTTCAATACCAGGTATAACCTGCAGGG
CTCAGGCATTAAATTATGGCAAGACTATCAACCTGAAAAAGAATCAACAAATGAAATTCC
AAAGAAATGTATCGAGTGGAACACCAGATACAAGATATTAATCCAGATTATGGCGAAGCT
CATTATGGCAAGACTATAATGCTGAATTATTCGCAAGGAACATCCAGAGCTATAACAACA
GAAACTTGTTTTAAGATGCATTCAACGGTTCTGAAGCTAATTTTCAGTTAGTCTGCAATG
ACTGTACACCACAAAATAGCAAGCGTAGCTGCTATCATAAAATCAAACATGTGCACAGTA
GTGCACACTGTACTCTCTCATCCTTATTATTTAACCACCGGAACTCTGTGCCATGATTTA
GCCATGCTTGTAAGCAAGTACTATAGTTAAAGAAAAGGAAATACAAAGCTCATTAGCTAC
TCTAGTATGTTGTAGCCCCAAACTTTCCCCAAAAAACTAAAATAACACAGTGTAGTATCA
GCATCATAAGATGCACTCACTTCTTTCTGCAAAGGGTTTTAACGAAATTCTTTGTCTTAC
GTTTCCAGACCCGATGGTAAAGACAAAAGGTATCGGATCACCGGTCGCGTCCTTGTGATC
ATAGGTTGAGTCGAAGCGCCATCCTTGCTTCGCAGCCAGCCTCCCATAGTAGTGAATTGC
AACCTTGAGCCATAAGAACATTTTTGTAAAAACAGGGAAACCATAAGAACATATTTTGTA
GGAGTACCTACTAAGAACTAACATCATTCCAACCAATTTTTTTTACTAGAATGATGTTAA
GAAATCCCTGTACTACTATGTATACCTTCATCTACAATAATAAGAAAACCATAGTCCTGT
TTGTATCATGGCTAAGTATGGGGAGTGGAGCAGTAAACTATAGCAATTTTTGGTTTTGAA
AGTATAAACCTGGTTAACGGGGACAAGTAAGAAAGGGTGCTGCTAATAAGCACAAACAGT
GCAGAAAGGCACCGCTTTTACCTGGTCTCCGTCGACCGGGACCTCGCCGGAACCCTCCCG
AAGCTCTAGGGCCTTCACGCCGCCGGAGCTAGGGATCTCGGTGAATCGAGAGGCCGCGGC
GGAGGCGGAGGCCGTGGGGAGTGCGGATGCGGCAGAGGCCAGGAGGAGGTGCCTTCTTGT
GGCCGTGAGTGGTGGTGCTGTAGCTAGGGTTCCGGGTTTTGCTTTCGCGGGAGGCGGCGG
CACGGCGCCGGCCGCCGTGGAGGCGGAAGTCATGACCATGAACGTCGCTACTGTTCCTAT
TGTTTCCCCTTCCTTTTCCTTTACTTTTGGATTAGCTTTGAATTTCAACCTCTTTTCCAA
TTTCCAAAGCGCTGAATTTTTTTATTTAAAAGGAAAATGAGAAGAAAAAACATCTGATGG
AGTTTGGAAAAATTCTCAACTGTTCATTTAAGTCTTTGTTTGTTACTCTTTCCATCTTTT
CGATAAAGGGAATATATTAATATCACCGATATATTAATTGCATCCGACCTCTGCACCTAC
AAGATATCAAAAGACATCAAGAATGCACACAAAGACCCCGTCATAGTGATGAAGCACTTG
CAACAACAAACACTCTAAACACCGCCAAAGACAACATCCGAACTACACAAGAGGTTCTTC
AAAAACGACGCCTCCAAAAAGAATCAATGCATAAGCGTTGTCGTCGCCCGATCAAGGATC
TTGAGTTTTCACCCTGGAGAGAGTCAGAGAGCCCAAAAGCAATGCCTTCGCAAGACCATT
GCCAGGTACAACCAATGAAGGGCAGACCTTGGGCTTTCACCGTGTATATCACGGATCGGT
ACTAAAAGAGCACCCCTAAATGTTGTCCACCTTTGTTGATGCCCCCTCTTGCCAAGGCCG
CCGCTGCAAATCCTTAACACCCGACACACAGAAAAAAGCATGTGCCGTCATTCTTCAACA
CAACCAAAACTCCTCGCCCCATTGCAAGTCTCCGATCACAACCACCATGACTTTCTTCAC
CAGTATCAAAGCCATGAAAATCTATACTCAGACATGTCCCATGGCACCGGCAAGACAACG
AAGCATTGTGCCACATCCTCATGAAGCCTCTCTGGCTAAAGATGAGGACGCGTTCTACCA
GATCAATTCCGATCTAGATATTCGGAGGCACCATGTGCCAAAAACGGAGATATCCGAGAG
GAAGACCGGAACCCGTCGTTGTGCAGATCGAGGAGGCGGGCTTGGAGTAGATCAAAATTT
TAAGCACGAAGAACAACAGGGGCAACCACCATGGGCTTCCCTGAATCCGGATAGGCCGAA
TCTGGGCAGTGCTCCCGTCGGTCGCTCCACACAGGCCGGATCTGGACAGTGCTCCCGCCG
GCTGCTGCCAACCCAGGCAAGGGTCACCGTCGCCAGATCAGATGCATGGGCAAGGGGATG
CAGTCCATTAGAGTTACAGCTAACCAACGGGACCATGCCGGAGGAATCTCCAATCCACAT
CACTAGTGTGTTCAGTACGCAACGCCATGAAGATGGGATCGACCGCGCGGTCCATGCCAG
CGATACCCTCGCCCAGCCGTTGGGCACCAAATCCTTGGCGGCTGCTAGCAGACGAGGCAT
GCACTGGTTGGCTGCCCTCCCCCTGGCCATGGTTGCCTTGGTACGGAAAGGAGCATAGCA
ACAAAACGGTAGCAGAGGTGAGAACTGAGAAGATCCATCGAGAGAAAGGAAACTAGAGCG
CAAGGGAGCGCGGTCCCGCTGCCGTCGGGTACCGCAAGGGCAGTGGCGGACCCAGGAATG
GGCCAAACCCAAGGCGAACCTGGCCAAGACCCAGACAACCTTTGTTGATTGTAGAAAATT
GCTACAGTATTTGCTACAGTCAACAAAGCGAATGGGCCTCTGCTACTTCTCAAATAACAG
CGCC