Map Locations of contig_46964 (5737 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46964

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62786 1 493 bp None Available Available None
MLOC_62787 3 2291 bp AK250336.1 Available Available None





CDS Structure of MLOC_62786






CDS Structure of MLOC_62787






Contig Sequence (5737 bp)

>contig_46964 5737 assembly3_WGSMorex_rbca.fasta
TTCCAGAGCCATGACTTGGTTTCGAGATCTTATGGGTTTCANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGTTGTTGTTGTTGTTGTTGTACAGTTATTTGAATGA
TAATACAAAGCCATACGTAAACATATTGTCCTAAATAGTCCAGATCTACATACCCCTTGG
TAGAACCCAATGGCAACACCGCGATGAAGGAGCCATATTTGGTTAGTTCTCTCATAGATG
TGTGCCAAAGGTAGATATGAAATGTACCTGGGAGAATGTCGAGTAGTATTGTCAATAATA
TGAACTGATGTAAATTAAAAGCTTCATAGGAAAACAACAGTTATAAGTTAAATTTAAGAT
CTCACACGTCCGAGGGGTAAAACTTAACGCCCAAGTCCTGGCCTGCTACATTTGCAATGA
AATTCGCATGAGAAAGAACAGCTCCCTGAGAAAAAAGATTGGCCTCCAGCTTTAAATATA
TGAAAAATAAGGGTACAAAAATCCCACTAATGGAGCATACAAATCCTTAGAGGAATGAAT
GTTTTACCTTTGGTGTGCCAGTAGTGCCACTAGTGTAGCAGATAGTGGCAACATCTTCAG
GTTTTGGAGGCCGAAAGGGTTGAGGACTCATATGTCCCTGAGTTAAAAATAATAAAAAGA
AGTCGAAATAAAAATAAAAAGGGGGAGCAGTAATAGGGATGAGCATAAAGTTAGAAGTGG
TGATGTCCTTTATTCAGGATCAAAGCAAATAATGTATGGATGGTGGTTACAAATAGGTTT
TGCATTTCAAATTAAATTAAATGAAGTTTACATGTCAAGCATGAACAGATACAATCGGTG
AATGTTAATGTGTACGTACAGTTGCAACTTATGATAGACATACAACTCTGTCCACAACGG
AATTAATATACAGACCCACCACCCTTCGTAGTCATGCAAGATTGCAGTATACACTCATTT
TGTCATGTGTATTATAATGGAAGTAAAGAGTCAATGTATTTGAGCACACTTACATATTAT
GTCATGCAAGATTAGTTGCGATATAAATTGCACATTTTGCTTGAGCCCAATACCGTACCT
CATATCATGTGCTAACTGCAAGGCTCAATAAGGTACCAGTCGAAAATCTGAAATGTATAA
CAGCAACCTAAGTGCAAAGCTATCGCTCAGTCCCCACCCCAGCCCGGAAGGGCACTGTTA
TGTTGTAATGCTGGTGGCCTGGTGCGTCTGGAAGCATCGGAACACAATCATCTTCAACGG
CGCACAGCTGAGCTTGGCTCGCCTGCTTGACATGACCAAGTCGGAAGCCAGGCAATGGGT
GTTGACAGGTGGAAAGGGGCTGGCCGCGCTGCTACCGGCAGCGACGGAGTCTAGCGGCTA
GGGATATTGTGTTGTAATATGTGGGTGTTGCCCACTGTTGGGTTTGTACTAATTGTTCTT
CTGTCAATGCATCAAAACACAAAGCTTTTGCGTATTCTCAAGGAAAAATGTTTAATGCAT
ATCCTAACATAAGCACCAGCTAGATGTTTCAGTTTTGTACCTATCTGCAAAGTGATTCCA
CAAAAGCCAACTTAGCCCATCCAGATTGATGTCCGCAACAATGGCTATAACATTAATATT
TCTCAACTCCGCGTACACATAAACAATGATTTACCAACTAGTTAAAATGGTATTGTGTTG
ACTGGCAACATTCATGAAAAGTGACCTGTATGGTGTTAAAGGATCCAACAAGGTTTGACA
GGAAAACTCAATGATTATTCAGAAAGCCCACCTGTCTGTGTAGCATGGAATAGGTTATAA
TTTCCATTCCAGCAGCTGCAGGTGAAGATGGCATATTCTCATCGATTCCACCAACTACCT
AAACAGAAAATATTAAGGCGCAAACAAGGCATTTGGGTTTTTCAAATTGCATATATTAAT
CTTAAATGACCTGCACTTACCACGATAAGGCGCACACAAGGCATTTGAGTTATAAAGCTT
AATAGCTGAAATGAGCAGACAAATATAAGTCAAAATAAGGTTAAATTCATATGTACTTGA
GTACTTCCTTATCAGAGTCTATCTCATTATACAGTGCAAAGCTAGATGCAAGCTGGTGTG
CATAATATGATTGCTAGAATTAAATTAGGATTAAAGACCAAGCCAAACCTATTGCCAGAT
CATCGCACACACACAAAAATTGTCGCCAGATCAGACCCCAGTACCCAACACTTCGACGAT
GCATGTATGCGAATTTGGTCCAGAACTAACGGCATTTGATATCCATTCATAAACTATACG
GCCTTTTGACACTATGAAGCACTCCTGAGAGTGAGTATATGAGATATAAACAAAGCCCCA
AGTAGGATAACATCAACATTAAAACCAAGACTCAGTTTCCATTTACCAGGAGAGTGCTTG
CCAGTTGCAAGCCTGGCTAGGACCAGTATGACAACAAAATTGAAGGAAAGCTGTAAGGGA
TGCCCCTACAGTATAAACAGGAACCCAAATTCACATCCACGAGGACTAAAATCCAGGTGG
TGGGATGGGATTGTACATCCACTCCCCAACCAAGTGGGCTAGGCTCACTTTCTACCAGTG
TGTCAATGTAATGTTACAGGTTATTCAGTGCTCTTCTATAAGTACTGTTTTAATGTACTG
TACAAACTAGGAATAGTCTAGGTTTAGATAAAGCATTGAAGCTCACAGTGCTTAGTGTTT
GTGGAACACAGAAGATAGCCTCTACTGATGCATGATTCACAATGAACTGAACTGCATCTG
GACCTGTAGCCAATAAGAAAAACAAAATCAGTCTCTAAATGATTAAAGGGAGAACGATGA
TCATTCTGTGCTGTGGACATACCAAGAGTATCATATAGTGGCACAGAAACATATGAATAC
GCAGAACAAGCATTGTCAACTATGGTCCACTCAGGTCTATTTATAAAATACAGACCAACA
CGTGCGCCCTGATTCAGATCAGAAGAATACTCGATGGTAAGTTGAAACAAATTCCCTATA
GGGCAATTTAAGTGTCATTTCAAGACATCAACATCTACAGCTTTATCTGAACAGAAAGAA
AAGGACAAGTGCCTTTTTCAGACACTGATGACTCACTTTAGGTATTCCATGACAAATAAG
GCCAGAACCTATTGCAGTCCTGCTTGTGCCAGCTTCTCCATAAGTCATCCATTTGTAGCT
GTAATGTTATTTCTCGCTCAAGAGCTAGGATAAGATAAGGAACACTACAATAGGTAAATC
TAAGGCATACATCAGATAATCGGTCCTTACTCTCCAATTGTTCCATCTGCATGGACCCTT
GTACCTAGGTATCTACAATCTCTGAAAGTCTCAACTGCATTCCTGTTCAATTAAAGATAG
CAAGGACACTATACATGAGATATTGTTAAGGTACTGCGATTGGAATAATATGAAATACGA
CCATATAGACACACTAGGAGCAGCTAGAGACTTTTGGCATGGCACACTGATTGTCCATAC
TAAGGGTCACTTTAGCAAAACATCCCATCAGCCCAAGGTTTTCAAAAACATGTAAGACTA
CGAATATCATATCATTGAGCATTTATTTTTCTTATCAACAACTTAGGCTGCGCCAACTCA
TTTTGCCAGTTTTAAACAAAATCTTCAGACAAAAGCTTCTATATTTATATTCAAGTTATT
TTGCAGCTCTTGATTTTTACGGCGGCAAGTTTCCTCTGGCAACAAAAGTAAGAAACCAAA
GAAAAAGAGAGTCCCAACTTGCATTAGTTTGTGCCAAACCCATAGATTTATTACTCAATA
GAAATAAGTGTGTTAGAATAACCTTGATGGCACTTCCGAATTGTATCACTTTCTGTGAGC
TCTAGGTCACCCTGTGCCGTCATAACTCTTTTATAACTTAATGAAATGCACGAGAACGTA
TTCTCTCAAAAACAAAGAAAAGAAATACAGTGATAAATAACTGAAGTGATTAACACCAAG
GGTTCTACCGGCGAGCAGCATGGGCAAGCCAGCCTGGGATCGTATCCTCACTGCTGCTTT
ATTTAGCCAGTTGGCTGGTTTCTCCTAGCTACCATTCGTATTTATTTTATTTCTGATAAA
TAACTGAATTATTTTGTCAAGAGAGAAATTAAGGTGAGTATGCTTACACAAAGTTATCAT
GCAACGTCCCAATGTCTGGGTGGTCTGAAAATCTATCTATCAGCGTTATAGGTGAATGTG
CAGATCTGCACAAGATTAGAAGCGCAATTATGAGTCACGAAATAGGCAAAAATGCAACAT
AACATTATGGTTCCTGACTGTAGATCTGCCAGAGATTAGAAGCGCAATTATGAGTCAAGA
CATAAGCAAAATGCAGCAAAATATTATACTGCCTCAAGAACCTACCGGTACACGTTCCAC
TTCCCAGTCTTTAACTTCTCAGGGAGGACAGCGCTGTAGCCAAGCACTGGAGGAACTAAT
TGCAATAAGTTTCTGGCGATCGGTGAGCTATATTTGAAACAAATGAAGAAAAAAAAGTCC
TTGTCCCTCGCTCGCTTGGGGGTACTGGTACAGTAGTGCCGTCCAGCGAGTCAACGGCGG
GCAGGGGAAGAAAGATAGAGGGCCTGGGATGCGTGCGTACCGTGGGCGTACTCCCCTGCG
GTGGGATTGGGGCCGAGGCTATCGGAGGTGCAGCGGTCGGCGGTTGCTTGGGGCTGAAGG
TGGGCGGAGACGGCGCGGAGGCGGCGCTCGGTTGCGTCCATCGGTGGGTTTGCCGTAGCT
GGCGCTGCTGGGCAGGGTAGGTGGGGGAGCAGAGCGGAGGGGAAACGGAATGTGTACCGC
GTGGGAGAAGAGCGGAGACGGAGGTGTTTGGACAAAACGGGCAACAGAGGAAGAATTTCT
TCGAATTTGGGCACAATTCGTTTGGTCTTTTTGGTTCGAGAGATCTTCCTACACGCGAAC
GCGCGCATTATTAGAAAATTGACCTCCCATGTAATTTTTTTAAAACACCCTTATATTACG
AGGTGTGCTTCGACTCATCTTTTTAAAAGATCAACCAGATCGTGAAATGTCTACATCAAA
CGAGCTGAGTACATTTTCATCACTGCAGGTCTACAACACAGGTCTTGTTGTAGAATTATA
TAATATGATTCTTGTAGCAGAATTTTCTTGCACCAACTGTTTTATTGTGATTTTCTTTTT
TTGCAATTAAGATTTTGTTACAATTTATTTTCGCAACTGAGATTTTACCAATAGAGATTT
TGTTGTAAAACATAGATCCGTCGTAGGTTATTATAACAGGATATATATTTCAGAAACATA
GTCCCTACTACAGAACCGCTATGCGGGAACGTCGTTTGGACGCGTGTCATACAAGGAAAG
TGACGGACGCGGCCACTGCAATGGTTAGCTTTTCCTTTATAATATATTTATCAATTAATC
AAAAGGTTATTACAATCACTCATTACACCTTGCACGGCAGGATAGAGTTAGGGTCTGTTT
GGAACTGCTCTGCTCCTTAAAATTCAGCTCTGCTTCAGAAAAGACAAGCCAAACGGGGTA
GCTCCACGATATGCCGCTCCGAAAAAAAACTAGAATCTGGGGTAGAACTTCAAAGTTTTT
ATGAAGCTCCTGAGACGGTGCTTCAAAAAACTCTAGAAGCTAGAGTTGGGGGAAAATTAC
CCACCACTGCCACNNNNNAGTGGATACCCCTTCGTTTATTTCCCCTCAACCAATCAAATA
GATTGTTTCCATCAGATTTTCTATTTTTGAAGCTGGA