morexGenes - Barley RNA-seq Database

Contig contig_46879
Source Contig contig_46879
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46879 (9106 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_46879

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62703	1	434 bp	MLOC_62703.1	Available	Available	None
MLOC_62706	1	220 bp	MLOC_62706.1	Available	Available	None
MLOC_62705	2	2632 bp	MLOC_62705.1	Available	Available	LOC_Os03g06520.1, FRAME:-2, EVALUE:0.0, 13103.m00715 protein sulfate transporter, putative, expressed
MLOC_62702	1	270 bp	None	Available	Available	None
MLOC_62704	1	216 bp	MLOC_62704.1	Available	Available	None
CDS Structure of MLOC_62703

CDS Structure of MLOC_62706

CDS Structure of MLOC_62705

CDS Structure of MLOC_62702

CDS Structure of MLOC_62704

Contig Sequence (9106 bp)

>contig_46879 9106 assembly3_WGSMorex_rbca.fasta
GCGTGCGAGAAACATTGCTATAGCAATAAGTAAACGAAGTTATACGAATCCAATCTCCCT
CTCGTAGATGAACATCACTATTGTAGGTCTTCGTGTGCGTAGGANNNNNNNNNNTTCCCA
TGCAACGTTCCCCTACAGCCTATGCATTAACTCAGATCTTATTCTCTCATACATTGACAT
CACCCGTAGCTCTCTGGCTTCTAGTATATACCTACAAAATAGCCAAAAAATAGTTACAAT
AACTAAGTTGCACTTCAAGAGAGCAAATTTGGACTACATGCAAATTTTATATACGTGTTG
AAGACTTCACAAGTATTGTTCAAAAGAATGTCACATTTTGGAAATTCATTAAAAATGATC
TTGGCCATTGGTTTGGTGGCTTTTCTTCCAACCATGCATATGCCTCTGGACCGTCTTGCC
TTAACTTCTCCATATTCTTCTCAAATACAGTAGGTGTGGTGGATTTTGCACAAATCCAGA
GTTGTTGCGTGATAGTTTCTCCCTTGTGGACTACATGGAGGTTTTGGTACAAGTGTCTAA
CACATAACCTATGCTCAGAGTCATGAAAATGCTCGTGCACAGCTTTGATGAGGCCCTTCT
GCTTATCACTCATAATAGTGAATGTGCTCGTGTTCATAATATTCAGATCTTGCTTTAATG
TAGACAAGAACCAAGCCCATGATGCATGGCACTCTGTCTCCACCACTGCCATTGCAATTG
GATATATAGAATCATTCCCACTATACCTACTGCAGTAAGTAGTTGCCCACCATATTTTGT
CTTTATAAAAGTACCATCAAGACATATAATGGGCGTGCAGCCCTTTAAGCACCCTATCTT
GCATGCTGCAAGACTGAAGTAACATGTGCTAAACAATCCATTTTCTAGGTTTAGATAGAA
AGAAGATCCTGGGTTGCTTGTTCTCAATTCCTGTGCATACTTCCAAAGAAGTGTATATTG
CTTCACCTCATCCCCATTCACCACAGCCAATGTTGCTTTCCTAGCTCTCCCAAGTTTATG
CCTGCTTACTTCCATGTTGTATTTCTTCCTCACTTTCCTTGCAAATGTAGACAAAGACAT
CTTGTCATTTTCCCTGAACATCTCCACATATTTTTTGGCTAGAAAAGGGGCTGTAAGTTC
TCTCACATCCCATACTTTCTCACAATTATGCCCTCCAACAAAGATTTTTACAAGAAAAGA
TTGGGTCTTGTTATCTGCCACAGCTACAAGTTTCCAAGGGCAACCCTCTATACATACAAC
CTCAAACCTCTCTTTGTTACTTCTTTTTTTCTTGATCTGCACTCTGTTCTTAATTGTATA
ATGTGCTACTACTTTTCTCAACAACTCCAATGAATCAAAAACCATACCTAGTTTGAATTG
AGGATTTTCCATGTCAACTAGTGGGTTAAATGTTTCGAACATGTATATGGGGTTCTCTTT
CTTTTTCTTCTTCTTGTACTCCTCATCATCAGAGTCACTCTTGTGTATCTTCTCACAATC
ATCTTCTTCTGGTAGCTGCAGTTCCTCTTCAGTGACATCATCTGTGCTTGGAACATGTCT
GTACCCAACTCCTACTTTATTCTCCTTCTCAACCAATGCATCCTGCACAACATCATCTAC
ATTTTGATCATACAAATCATCATCTTCATCCACTGCATAATCACTGTCATACCATGTTGT
ATCAGTCTGTGAATCACATTCCCATTCCGCTTCTGCATGTGATGACTTGTTTGAACTTTC
TGCATCCTGGACATTACATGCAGCTGGTATTTTCTCAGAATTTTCAGCACTCTCTGCACT
AGCTTTGTTTCTCTTTGATTTCATATGCCTACTCTTCTCCTTGCTTATAGGGCTAAGTAT
TACTGGAGGCAATTCCGGCCCAACCCTATGAACAATGTCATCTTCCTCCTCCTCCAATTT
TTTCATCTCTGTTTTTTCACATGCTTCACAAACAAAACAAGCACCTTTGAATTAACAGAA
GCTTGTGCCATCTTCAAACAGTCCACTTCAAAATCAATTGCACCATTTATGCAACTGTTT
TACCAGGTGGGCACCAAAAAACAATATCCAACTCACCAGGTGGATATTTCAACTCACACA
ACATATAGCCAATTATATCATTGCAGAAAGTGTTCCTATCAAGGTTATCAAACAATGATA
CTTTTTCATCCAAATATGCCAAATTAATTCCTTTTCCCATGAAGAACCCACCATGATGCA
TCTCTATACTGAACTTTACTAAATCTGAACCTACATTGTAAAAATCATGATAAATTAACC
CTAGCTATTAGGGCAGGGGAGGGGGAGGAGACAGAGAACTAACCGTAGATCGGCCGCCCC
CCCTCTTCTGTCCCTTCTTCTGTCCTCAACTTCGACAGCATCTCCGTCGCCTCCCCGGGT
ACACTTGCCGCCGACGAGCTCGACGCACCCGCACCACCGCCGCCAGTCACCTCCCCCATC
GGAAAAGCAGAGAAACGACGGTCAACTAAGGCAGGGACGTCCCCAAGTGATTAGCACAGG
GACCAGGGTCTTCTGTGCAAAGAAACAACCCCACACGTGCGGCTCGTGTGACCGCGAACA
AAAAAAACCGGGCGACAGACCGGTCCAAGTGACGGTTGTGACCTAGATGCGTCCGCAACG
CAAGTTCTGTGACGGATTTTTCCGATTTGCAAGTAGTGTGACTTAAATGCACCTGCAAGA
CAAGTTTTTAGACCGCCAACACCTTTTACTCATCTCTTGAGGTTACATATATACAGATTA
CAAGGGAGTAGGCTTTGGAGCCGGACGAGCTAACATAGAAGAGGAGATAAGCACATAGTG
CATGCGGTTAGGGAAATCCTTGAGGACGTGGTCTGCATGGTTAGCCACGTGATGAACGTG
TCGTGGGTGTTTTCCAACATATATTGCATTTGCACAAGCTTAGCTTTTGCTTCAACACCA
ACAAAAACGATGATATTCATTTCATGTGGATTTCATCCACAATGTAGGAGTACAATAGCA
CGAGATGTTTATACTGATCTCGGCTTGCATTGCCTGTTGGCAGCTCAACTCAGGTCAGGT
CAGACCCAATCAGACCATGTTCTCGCGCGTGGCACTGCCGGAGACCATGCCCGGCTTGTG
CGAGTGCAGCACGAAGTCGCACTCCGCCACGGCCTCGCCCACCGTCGGGAAGATCCACTC
GTGGCCGATGAGCTCCAGCACCTTGGAGCTGTCCAGCTTCTTCATGATCTCGCTCCCCGG
GTTCGCCAGCACGATCTGAAACCAAGGAGAAATCAGCCATATAGTTCATGACAAAGCACA
CATATACTTTCTTCAGAAGAAGAAAGATGACAATTTGTGTTGCTCTGTTCTTACCTGAAT
TCCCCTCCTGTCCAGGGTCTTCTTGAGCTCGTCCAGCATGCTCGTCCCGCTGGTGTCGAT
GCTGCCGACCGCTGCGTGCAGACAGAACAAGTTTCAGAGATGCTCTGCTCGAGGTGTTCA
TGTGGATTTCATCCACGATGTAGGAGTAGGCATTGTTTCAGAACAAGTTGCTGTAACTCA
CCACCCATGTCGAGGACGACGTACTGCACGCCGGTCTCGCCCTTGGCGCTGGTCCGCTCG
TCGTCGTCGTCGATCCACCGGGTGATCCTCTCGCGGAGGTAGCCAGAGTTGGCGAAGTAG
ATGGGGGAGTCCACGCGCAGCACGAGCACGCCGGGCACCGTCCGCGCCGTCGTGTACTGG
TCCATCCGGCGGTAGACGTTGGTGTCCGGCACGTTGCCCAGCACGGTGGTCCTCGGCCGC
GCCACGAAGAGCAGCACCCGCAGCACCGAGATGGCCACGGCCACCACCAGCCCCATCTCG
ACGCTGCCGAAGACGACGCCGAGGTAGGCCCCCGCGCAGACGCAGAAGTCCACCTTGTCG
ACGTGCCACAGGTGGACGGCGGCCGGGAAGTCGATGAGCCCCAGCATCGCCGACATGATG
ATCGCCGACAGCACCACCAGCGGCGTGTAGTGGAAGAGCGGCGTCAGGAAGAGGAGCGTC
ACCATCACCGCCAGCGACATGATCACGTTGGACATGGCCGTCTTGCACCCGGCGTTGTAG
TTGACGGCGGACCGGGAGAAGGGGCCCGTGGTGAGGTAGCAGGAGGTGAAGGAGCCCAGG
ATGTTCATCGTCCCGATGGCGATCATCTCCTTGTTGCCGTCGATGTGGTAGTTCTTGAAC
ATGGCGAAGCTCCGACCCACGGCGATCCCTTCCTGCGAATGTACTCTCTTCTGAGTAAAT
CTTCCACCGGTGCACTTAACCTCGATCGGTGCAGCAGTACTAGCGAGACGTAGGAGCGTG
TTGGGCTTACGGCGAGGGCGATGACGCCGGTGATGAGGCCGGTCTTCAGGGCAAGCATCA
TGTACGGCGGCGTGAATTGGAGGTTTGTAACGGAGATTGGGTTCAGGCCTTTCTTCAGAT
TACCGATCTGGAGTGTTCCAAAATGGCGCCAGTCATTCAGTCATCAGTTACTCGACATAC
GTGGAAGCAAATGTTGTGGTGAATGTATGGGTTGCTCACAATTTGAACGCCATGGTTTTC
AGCATGGGTGAAGTAGACCAGGAGGCTCCCGAGGATGACCGACGTCAATGGCGCGGCTGC
GGATATCCAGAACAACCTAGGCTGCCTCTTGCTCTGCCCAAATTTAACATAAAGATTAGT
TTCACGAAACATTAATAATTTCAGAGTGATGCTAACTAACTTGAAGTGGTTTCAGAGCAG
TAAGAAATGGTTTGTCAGACAATCATATTCTTGGTTCAACTTGGACCAAGAGCCCCAAAG
TTGAGACCAGTGTTTGGACATAAATATTCAGAGTCTTGTATCATATGGCCGGTTGCGCTT
TGAAACATGACAAAAACGCTGGAATAATCAGCCAAAAGTAGTTCGGCATGTGATGTTCTC
CCCAGGAACAAGCTTCCTCAGGCATTGGACCAGTTAATTAATTAATCAATGATAATCACA
CCATAATGCAGCGGTTAGTGGAGCCTTGGCCTTTTGCAACTATTATTCCCCCAGGTCGGC
TCTCGCTCTTTCCCCCGCCCATGATGTTTGGTCCGGCGCACGCATTTCGCCATCGACGTG
ACACCCACCGATGCGAAAACGGGCTAGTCAGGATGCAGGTCAAGCGCTGTCCTGCTGACA
GAAAATGACACCATGCAATCAACGCCTGTCTGTCTGGCTCGAAATTATGCTCCTCCGTCA
CTACCAACGCCTTTGAAAAGACAAAAGGCTTCTCCTTTTCATCAGACGCAAAAAGGAAGG
AGCACCCCCAAGCCACATATGCTAGTTCAGCACAGAGACCAAATTGGATTTGTGCAAAGG
CGGATGCTAATTGTCGAGCAGTGTATGTTCAGAGGCGAGGAGGAAGATGACAGTGGAAGC
ATGGAACAACGCCATGCATGCGATGAGATCAGACTCAGAGGCATGTGATGTGCCATGTAT
CCAAAAGCGCCCAATGGACGGATTCCTTTGTCCCGCCAATGAGCTCACGAGCGGGCGTCC
TCATGTGGAGCAGGCGCTACCTCGCCTACCTCATCTCCAAAGAGCTCACGAGACCAAATT
GCCTTTCCTGCACCTCTCGAGCTCGACCAGACCTGTGACTGACTGAATCACTGACTGACG
CAGCTAAACGCTGGGCGCCTACACGTTCCAGACACTAGCTAGCCATCAGGTTTTGGATTA
ACGAGACGTGCGCAAATGGGGTTAGCCTCTCGTGCAGCGCCGTCAAAACCACCGTGTCAC
GGATGGATCGAGGCAGCGTCCGTGCCGTCGCGATCCTGGCGCAGAGTGGGGCACTACGTC
ATGGTTCGATTAGTACATACAGTAATGGGGTTGGGGATGCAAGAAAGGGCCCAATCATTG
GTGACGATCGATGGATCCGTTCCGTGGATGGATGGGTCGATGGATTCTCTTGTATGGTCC
TAGTTTATGCGCCCCTTTTGGAGTGATTGGGCACGTCATTAGTTTACCAGAGGAGAGATT
CTCGCGCCACTTACTACCGCTGCTGCACTAGCCATATTACTAGTAGAAGTTAAGCATGAG
GTGTTCATATAACTTACAGTGTACTTATAAAAGAAAAGGTGATCAAAAGCACTTGGTATT
TGATAAATATTATTATCAACAGGAAAGGTAATCAAAAGATCTGGGGAGTAAAGTGAGAAT
GCTAGCTAGTATGTATGGTAGACTTGACTTACAAAGAAGCGGGTGAGGAGAAGGAAGAAG
AGGAAGCCGCAGCCGAGCACCACGCTCTCCCATCGCCACTGCATGCGTCCAATCCAACCA
AATGAACCCGTCAGGCGTCAGGTACAAGGGAACTGTTAGGCGCGAGATCAAATCGGGGTT
AACCAGGACCGGTCACAGCACAAGTAGACGGACGCGAGTAGTCACGTGCATATGATCGAT
CGGTTGGATGCATGTCCCTCGTATGTACGAATGCGACTGTGACCAGCTTAGCAGGACCAA
GCTAGCCAGAGGTGCAGCATGCACATAGGCATGGCCGGCCGTAGAGGCAAGCAAGTGGAG
CTTATGCGTCGTGTCGTGTCGAGTGCCTGTCCTTCCCGGGCATGCACGTACAGTAATTAA
CCTTGCCGGTCTAGACATATATATAGCGACCTACCCCAGAGGCCTGTGCCCCCGGGAGGC
CAGTGTCCCGGAGTGTCACGCGCGCGCATGCACCGGTGTCATCATACCATCCCTCCGTTT
TTCATGGCCTAAATAAGTTCTTGACGACGACTATGTATCTATCTACTAGGGCTACTACGC
AGAAAGACGCACCGTGTGCTCCAAAATTCCAAGTAGTTTGATCACAACATGGAAGAAAAA
AGTACTATAGTAGTACTAAAAGATGCATGCTATCTACGTATGGGCTCTTGGAGTCCTAGG
CCCCTACCAACTATGTATAGGTAACACGATGCATGCAAGTGTCAATTATATTAGTAGGAA
TTAGCAGATGATGATTGGTTAAAAACTGGACCTGGTGTGTCTGGGAGAAGACGGAGCGCA
TGACGGAGACGAGGTCGGTGGAGGTGGTGAAGTGCTCCAGCCCCAGCATCCCCTTGAGCT
GCTGCAGGCACACCACCGTCGCCGCGCCGCCCATGAACCCGACGATCGCCGCGTGCGACA
AGAAGTCCACGATGAAACCCAGCCTGCACGTACATGCATCCATCCCAGTAAATATACGTA
CTCTACTTACGTGCTGCAGCAGTTACAACTAAACCTCCACACATATATATATACCAAGCT
TGTTGCATATGCTTTACGTACGTATGTAGGCGTAGCAGTTACTTACCTACAGTGCAGCAA
AGGGGCAAATTACTAAACCTGCTAGTTAGTCTAGAAGCTAAGGAACTTTTGACTAGTTAG
AAAGGTGCCACTGTGCTTTTGGTCCATTCTCACCAACTACGTATGTGGCTTAACCCACAA
GAGACAGTTTAGCTAGCTGTGGCTTTCCTGATCCTAGCTAGTAATGGTTTGATTAGTTAA
TTAATAGAGTAGAAGCAAGCAAGGAGCTCATGCATGGTAGGACGTGCCTGAGGATGCCAA
GCGATGCCTGGATGACGCCGGCGAAGAAGGTGGCGGTGAAGGCCAGGTGGAGGTAGAGCG
CCGGGTTGTCGGTCGGCGACACCTCGGCGCCCAGCATGGAGCCGATGAGCAGCGACGCCA
CCGCCACCGTGCCCACCGCCAGGTCCTTGGAGCTCCCCATCATCGCGTACACCAGCGGCG
GCACGAAGCTCGAGTCTGCACTCGGCCATGTATACCCATACAGTGAGAGTGAGTGACATG
CAGTGCAGCTAGCAGAAGTGCAGAGCACGGCCAGCAATGGCGAATTGACGAGGCGATGTA
GTAGGTGGTACGCTTACAGAGGCCGAGGATGGGCGGCAGGTTGGCGAGCTTGGCGTAGCT
GATGCCCTGCGGGATGGCGAGGCTGGCAATGGTGATGCCGGCGATGAGGTCGGACTTGAA
GGTGCCGAGCCTGTAGGCCGGCGCCCACTCGAGGAAGGGGAAGAAGTAGCGGAGCGCGGC
GGCGGCGCGGCGGCCGAAGCCCCGCTCCCGCACCACCGCGCGAAACGGGTCGTCCGGGAA
GAAGGTCTCCTTGAGGTTGGCCCGGAACGTGTCCAGGAAGGGCCGCGCCTCCGGCACCGG
CACCCTCGGCGCCGCCCTCCCCCCGCCGCTCACGCTCTTCCCGGCCGCCGCCGCGCTCCC
GCCCATGGCCGCTGTGCTGGCTGCTGCACGTACACGTGCGCTCTAACTTAACTGTGTTTG
GAGATTGGAGATGGGTTTCACCGCTCCTGCTCGTTGCGCTGGCGCTGGGCGTGGTGTGGA
GTTTGATGGACGCTGGCCGTGTTGCGCGGGTGTATATATACAGCGGCCAGGGGTCGGATT
ATTAGGTGTCCGGTCCGATCCGGGCGGGTGGGCTCGGTCGGGATTTTAGAGTTTGCGTTC
GCGTTCCGGGCGGGCGTAACATTTTGCCGTGTGGTGTGATGCGAGGGTTGGGTGCACGCC
GCTGGGGCCCCGGCGGACAGTGACGGAAGGACGTGGCTGACGTGGAGCGTGCGGTGGAGG
GAGGAAGTGGGAAGCTTCAGTAGAGTATAGGGTTATTGTTGGCGTCTCTCGTGCGGGTGG
GCGCCGCTGTCGTCTCGTCTCGTCTGCCGCCCATCTGCCGTGCGATCGGCCCGGTCGGCA
TCGCTTTGGTGTTAGGGCAACTCCAACACGCCGATGATTTAAGAGGACAGCGATTTGGTC
CGTTTGATTTGGGTCGGCCAGCCGTATATGAATGTCTGTTTTCGTAAATGAATCGGTTCG
TGCGTTCAATGCTCATCAGACCCATTTTTTACCAATGGGAAAAGAAATACTAAACATAAT
TAAACATTAAAAACCAATCACGAAGGCCGGCGATAGTCCACGCGTCGCGTCCGCATTACA
TTAAATAAATAAATAAATAACAAAAACTGCAGCACTAGGCGTCGTCGTCGGGGCCGGTGA
GGTCGACCAGCATTGGCGCAGGGCCGGACCAGGGGAACGCCGAGTTCCAGAACGCAGCTG
ACTGCGCCTCCGTCGTCTGCCCCGCCGGCGCGGGCTGTGGTGGTGG