morexGenes - Barley RNA-seq Database

Contig contig_46818
Source Contig contig_46818
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46818 (9082 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_46818

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62656	3	1486 bp	MLOC_62656.3	Available	Available	LOC_Os03g42810.1, FRAME:+2, EVALUE:0.0, 13103.m04602 protein endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MLOC_62657	3	2232 bp	MLOC_62657.1	Available	Available	LOC_Os03g56070.1, FRAME:-3, EVALUE:0.0, 13103.m06111 protein expressed protein
CDS Structure of MLOC_62656

CDS Structure of MLOC_62657

Contig Sequence (9082 bp)

>contig_46818 9082 assembly3_WGSMorex_rbca.fasta
ATTAGTTAGTTAGCTTATTATTTTAATAAACCAAAATGATTATAAAAGATTAAAAGCGTG
TGGTATTTNNNTCTCCCGTTGCAACGCACGGACCCTTTTGCTAGTAAACTTATCATGTCC
CTAAGTCGTTGAAAATCATTTCTTGTCCAAACTTTTTATACGAATATAATACTTGATGAT
GTTTGATTCCAAAAAAGTTTTATATTTTTGTGATTTTTTTTTGAATTACCAGTTTTTTTG
GCGCATATAGGGTGCACGGGTACCGAGAGCATCGAATTCCCATCCCCATATATATATATA
CTATTCACAATACTAAAGTTTCAGTCTTCATCTTGCAGTAGTCCATCTGATTTAACTTCA
TTGAGGGCGCTACTGATTTTACTGCGAAACCTGTTCTGACATGCATTTCTGTTGCTTTGA
AAATCGAAATTAACCGGACAAGATCCCCCCCCCCCCCCAAAAAAAACAGTGCAATGCATT
TCTGCTCATTTTTAATATACGCGAGATAAAACGAGAGCGATATCGCTTTCACAAGGCGGT
TGTTTTTCCTGCCTACATACCTACCTCCTGATCAGTGATGCACAAGGCTCCCATGGTGAA
ACTTCAGCAGCACAGCAAGTCCAGCATGTTCCCCAATTGAACTCCTCCATCAGAGAACTC
ATGGTCAACCAAGTTAGCTGCTAAGCAAAACTGTGGCCCTGATTGTCTCCAAGCATCATT
ATTTGGCAGCAATTCCGCTGGTCCTCTTTATGTGCCTGGTCTATTTCACATGTGCGCTCT
TTGTGGAGTGCAGCAGCAGCCCTTGCAACGATGCGACGGCAAGCGCGATCTTGTTGTCGC
ATCAAAGATATCCAGCACCTAACTACCCAATCCATGTTAACCAAGTGGTTGGTCCTCGGC
ATTCCACTTGTCTTTTTCTCTCCACTGCCATGTTGAAACTTGCACAATAATTGCTGACCA
GGAAAACGTGATGACCAGAAGCATCTCAAAATCTAATCAATTTGGTTTCCGCGAAGAAAC
GTCGAACTTTCGGAACAGATCTTGTATAAAAAGTCCCCTTTTGTAATCTTCTTCTTGTAA
GATAATTGGAAGAGAAGGGCTCAGCCAACATAGACATGGGCAACTGCAGCAGCTTCAGAT
GGTCAGTATTATATTATCCGTTTGAGATAACAAAAGTTATATACATGTCCAGTCTTATTA
AAAGTTTCTTTCCATGTGATTGATGCATGTATATACTAATGGGATCGCAGGAGATTCAGT
GAGCTGAACAGCAATGGCATGGTTTCCATTGAAGAGGATGGAACTCATGAAGGCATCAAG
ACGATCCGGATTCAGAAAGCCTGTGAGTTCACCACCGGCTCTGTGCTCTGTGTCTGCATT
ATCACATGGAACATGAACGGCAAGGTGCGTCGTATTCTTGGCTGTGTTCTTCTTGATGGC
TCAATCATATTCCTTTGGTTTAATATCTGTTTTTTTTAAGATGTCTGTGGAGGACATAAG
GAAGCTGGTGAGCTCCAACAGGAAGTTCGACTTGCTGGTCGTTGGGCTGCAAGAAGTCCC
GAAATGCGGCGTCGAACAAGTTCTGCAAGAAGCCATGGCTGATACACACATGTGAGGAAT
CTTCAAGGCGAACCTTTTCTTTTATGAACATTCTGAATGTTTTCACCATATTCTGGAACA
CATCAATGGTTGCCGAAATTTCAGCTTGTTATGCCAGAAGGCCATGCAGTCGATTCAGAT
GTTCCTTTTCGGGGCAAAGAGTTCAGAAGCGTACATCAAAGGTGATCTTGTTATTATATA
GTTGAGTATTCTTGATGTTGAAAGAGCACTTCTAATCTGATTGAATAAGTTATGTTTAAA
TTCTGAATTTGGACAGAAATGAAGGTAGATGAACACGCAGTTGGAGGCTGCGGTGGCGTA
ATTGGGAGGAAGAAAGGAGCTGTGGCCATGTATGTAAACTTCAGCGGGATCCAGATGGTA
TTTGTGTCCTGCCATCTTGCAGGTTGATTTACAACTTCCGGTCAACCCATTTCTTATTAG
TATCACTAATATTGTGGGGTGTTATAACCTCAGTGCAAATACTGAAAGCAACAATAATTC
AGTAATTTAACTGTTGTCTTCAAAATGTTGTTACAAATAACTAACAAGGTGTCTTACTAA
AGTGTAGCCCATGAACGCAAGGTGGAGAAGAGGAACTCTGAATGCCGGCATATTTCGCAC
TCGCTGTTCTCCAAGAATGACATACACTACGCCAAATCTGCAGACATAACAGTTTGGCTT
GGTGACTTGAATTACAGATTAGAAGGAATAAGTTCGTTACCAGCAAGGAAGATGATCGAG
GAGAATCGTCAAAGTGTAAGTGTATACCAGCATGGAACTATTTATATTTTACATGACATA
AATGCCTGATATATATGCGCTGTTTCAGAAGCTAAGAGACAGAGACCAGCTGCTGCAAGA
AGCCGAGAAGGGTCAAGTGTTCAATGGGTACTGTGAAGGGACCTTGTCTTTTAAGCCAAC
ATACAAATATAATGTCGGAAGTAGCAACTACGATTCAAGTTACAAGGTACCTTCAATTAA
TATCATGTTAGGATGTCAATTTGTCTGAAAGAAATTGCACATATTCTGGAAACTTAATGC
CTTATGCATATACTCTTCACTTCCTCAGATCAGAGTACCATCTTGGACAGATAGGATATT
GTTCAAGGTTGACCATTCTTCTGGCTTGGACGCCGTCTTAAGTTCATATGAAGCACTTGA
TTGTGTTAGCAGCTCGGATCACAAGCCTGTGAAAGCTCATCTTTGTCTGAAAGTACGTGG
TGGCAATTCATAGATTTATGTTACAGTTGACAACCGCAAGTATATTTAGATGACTGATTT
TTTTGTAACAACAATTGTAAAGGCAAGTAGCACAGATCATTATCTATCCTCTTAAAATGA
TTCTGCTTGATGTAATTTGGTAAAGTCAAAATGTCAACCTTGTATTCATGTTGTTTTGTA
CCCTCGTGATGTTATATGGTGACGCAGATTTTTCGAACTGATCGGCAGGCGTTCTACAAA
CAACTTCCTGATGTGTTCTTATAGTAAGGAAAAAGAAATACCCAGCATGTACAAACACCA
GTTAATACGCATACTACCATGTCAAATATATGTCATTGACATAGCAGAGCAGATTCTTTA
TTACTGAACACACTTTTTCCCATTGATACGCGGGATGAAATTTGTTACACCGACTAGCAA
TTGTGATCAACACATTGTTCATATCGGCGCTATTGTGTGCAGTTATAAAACTGAATCATG
AAAAATATGCTGGGTATTCTTGTGTTTATATATTCAGCTACACAATTCTTAACTTACTTG
CATTTTTGTGTTTTCAGTACAGACTTTTGCATTTGCAATAAACGTCTAGTAAGGGTGTAC
AAAACAAAAGTTTCACCTTTCTCATAAATTTCATGGACACACTTCCATTTATAATAAAAC
TCTGAAAACCAATTCAACGACATAGATACACATTTCACCGCTGAATGAAATTTCTTCCGG
GCTTTCAGCTACAAAAGAATATCTAGTAAAGATGATACATAACAATAGAGTTTTACTAAT
CACACCAATTCCATGGACAAAAACTGGGAAACCTGACAGAACCCTGTTGGTGTGAGAGTT
CCTGGCCAACCCCCTCCTTAGTGTACACCTCTTGTTGACAAAACTCACAAAACCAGTTCG
ACGCCATAGATACACGCACAGTCTTTTGGATGGAGCAGACAATATAATCGTTGTCCTCTT
TCCTTTCTTTTTGCCACATGTTCTAGTCAAGCTGCCGCTGTTTGGAGCCTGGATGTTTTC
ACGGGGGCCTTCCTCTTTTCTCCAATTCGAGAGGGTGCGGTGGAACCACTGAACACATGG
AAAGGAAAAGATATCATGATGCGCTAAAATTCAGAAATCAATGTGTAAATTCGGTAGTTC
AGAAAGGGATACAAAACTGATTTGGTTTTCCAAACCTTGTTATTTTGGCTGTTCTTGTTG
ATGACGCTGCCCTCTGTGATTTCTCTACGGTTTTGCCTTTAGTCAGCGCAGGCCTCGCAT
TGTTGGGACGGATACTACTCAAAACCGTTTTAGATTCACCAAGCCGACTCGTGGCAGCGT
GTGTAATTTGTTTCCTCTGAATATGCAACATGGACAGATGAGCAATTCAGCATCTGTGTT
TCTGAATTGTACTACTGCTAAATTGATCTGGACCGGAGAAATGCTCACCTGCTTGTCGCC
ACAAGTCAGTTTATCTCTTTCCTTACCATCAGGGCATCTTCCAGTTTGCTGCATCACATC
ACAGCAGTACATAGAACAATGAGTAACCATAGGTGGTAGTCGAAGAAATCTGAAATGTCA
GGTTGTGCTCTCTTGATTTAACCTACCATCACTCGCCTATTTTCATCCTTTGGCATGGTG
TTCTTCTCGGAGGCCGTAGGTTTTCTTTCTGGATTTGCATCTTTCAACACCTGTCTTTCC
TAAAGGCAGCACAAAGAGTGAAGTCCTTTCAGCAACTGAGTGGAATATCCTTAAAAAAAA
ACAAGCAATGTGTGATGCAATGCACTCATAACTCACATCAGTCCTTAGCCTGAATGGCCT
TAGGATGGTATTTTTCTTAAGCTTCCCTCCCTGCTCTGCATTCACCTTGTTCTGCCTTTT
AAGCACCTGCATTTAGTCATGGCAGCATTTCATTTCAGGTTCCACATATCTTACCCTACA
GCTAAAAACTATGGCAAACCACACTAGTCAGTTTCAGTACCTTGCGAGGAGCATTCTCAT
TGTTCTCCGACCGCTTGCTGTTTTCATCTTCTTCTTCTTCTTCCCGAATCAAGGCTTGCT
CGGCGAGCTGATCGCAGCACGGTGCATTCTCCTTGTCGTCGCCATGAATGTCGGGCTGCA
ACGGTTCCACCACCTCAACCCGTGACTCCTGCAGCACCTCCTTGGGTTCTTCCCCCCAAT
TGCGCCTCGCGGTTCGTTTACAGGAGTTCTCATCCTTGTTGATGTGCTCACGGCCACTTC
GGTTCTCTTGGTCTGCTTCGGCATTGGCGCATTTCACTAAACAGCCTAAGATCATCTTCT
TCCCGTTCCTGGGCTCCTGCACCCTCTTGGCGATCTTCACCGCCGCCGTCTCCTCCTCGC
ACTTGTTGGCGACCTTGGGAGTGGGCAGCTGCGACAGGTACCTGCTAGGCACCTCCCGGC
ACGCCAGGTTGAGCTTCTTCATCTTGGAGCAGACCTCGGCCACGGGACGAGGCTGGCTCT
TGGCCGGCGTCTGCCGCCCGGCCTCCTTCCTGGGCGTGGTCATGAAGAGCGCCTTGACCA
CGGTGCCCTTGATCTCCGCCGCCGCCGTCGCGACCGGCGCCTTCTGGTGCTTCACGCTGA
GGAAGGGCTCCTGCCTCGGCCGCGCGGTCTTGCTCCTGGGCGTGGTGAGAGCCTTCTTCC
TCGCGCTGGACGCGTCGACCCTCGCCGCCTTGATCCGGACCGGGGAGTCCCGCAGTCCGC
GGATCCGGTGGCCCTGCAGCCTGGCCCGCGCCGCCTCCGTCGCCAGGCTCAGCCTGGTCA
TCCGGGTCCTCGGCGGCTTCGCCGGCGCAGAGTGAGGGCACTTCGGCAGCATCGAGCTGC
ACGACACCACCAACAAATCCGATCTAAGTAACAGCCCGATTCAGGTCGGCGGCGGGCGAG
AAAGGGGAGGAATTCGGATCGGAGACGCGCGCACCTCTGGTTTCTCCTGCTGATGGCTTT
GTGCAGCCTCACGTTGGGGCTCCTCGCCGCCATGACCTGCGGGTGGGGGGAACAACGGAT
CACAGCTCGGTTCCGTCAGCCGTCGAATTCGGCCGCGCATCAATCAAACAAGGCAAGTCG
CGAGGTTCGTGAGAGCGATGGATGGATTGATTACCCGCATGACGAAGCTCCTGTGCAGCG
CCTCCGGGTCGACATGCTCGTGGCTCTGGTCGCAGCCTGCGTATCACACGCCGCGGTCGC
GGACCATCAGCGCCGGGCCGAAAGTTGGCGTCTTTTGCTTCTCAGATTCGAGGACGGATT
GATTTGCTTACCTACGCGGATGCAGAACCAGGAGGGGTCGTCGGCGGGACAGGAGTCGTC
GGGGGCGGTGAGGTCGACGAACTTGGGCGCCTCGATGTCCTCGTAGAAGACGCTGTCGTA
CTCCTCCTCCTCCTCCTCCCCCTCGTTGCCATGGACGCCGAGGCTGCGTGGGATCTCCAT
ATGCGCCTGCGCCGGCCGGCGGGATCGACGGTCTAGCGGTGGCGGGCGGGCGTCGGAGAT
GGTGTGTGACGGCGCGGCGGGGTTGTGGCTGCTCTGGCTGTCGGGCGATGGATTTTTGAG
TGCGGTCCGGGAGCGGCTGGGGGAAACTAGCCGTTGGAGCGGCGGCGTTTTCTTTCCTTT
TTTTTTTCTCACTCTCTTTTGAACCCGTTGGCGATGTGGCAGTAAATAAACAACCACGGG
AGTGAAGGTGTGTGAGACCCGGCCGTGCACGAGTATTTACCAAATAAGAAAACAAATAAT
AAACGCCACGATTTTTCTTTGGATGCTGATAACGCTCATGGCAATACCCACTCACACGTC
TATAACACATACCCCATCCGTTCCTAAATATAAGTCTTTCTAGAGGTTTCATTGGAAGAC
TACATATGGATGTATATACACATGTTTTATTCATTTTCCTCCGTATGTAGCCCCTTAATG
AAATCTCTTTAAAGACTTANNNNNNGGAACGGAGGGAGTAGTAGATTACAGTCACGTCAC
CACATGCATTTATGTAAAAGTCTTTTCGGATTTTCAATTTTTAAAATATTTTATCTTTTA
AATAAAAAATCTGATTGAAGATCTGTTTTCATCATTGCGGCGAGATCTTCGAAACTAGAT
CTCATATCAATATGTTTCAATGATTTTTTGTTAAAAGTTGTCATGTCTATTGCACATGAA
TTGCCATTGTGTTTACACTGAAGTTATCATGATACATTTAAGCTATTTTTTCTTCTACCT
TTAAAATTAAATTTTAACATATTATAAAACAAGGAATTAAGAAACTAGACTTGACATGAA
CCATAAACTAAAATTGTCATGGTGAATTATTATTTTTAACACAGTACAAACGCAAGCGCT
CATACATACGCGCATACACTTACATGATGATTTACTTAAAATTTTCATGATACATGCACT
TAAATTTGTCATGGTTCATACAAAAAATAATTTTCATGGTCAAAGTACTGGAATTTTCAT
GGTCAAAATACTAAAAGTGCCATGATTTATAAACTAAATTTGCCAGGATGAATTACTAGA
AATTGTCATGATTCATGCATTAAATTTGCTGTGGTTAATTACTAAAAAATGCAATGGTCA
ATTAATAAAATTGCTGTAAAAAGTAGTTGAAAATATAATGGTAGCTTTAAATTAAAAAAA
ATAGATAGTACATGTCATGGCAACTCTAGTGTAAACACTATGGCAACTATTGTGTAAACA
TCATGGCAACTTTTGGATAATTTTTTTTTCATCGAAACATATCAGCATGAGATCTAGTTT
TGAAGATCTCGTCGAGACGAATTTAATGGTGAAAACAGATTTTTAATTGGATTTTTTAAT
TACAAGATAAAACATTTTTAAGCCTAAAACCAAAAAGATTTCCGCGGATGTTATCTGTTT
TGACGTGGCAAAATGGATGATAATGAAGGCGTTTGGGACATGTTATTTTGTGCCACACGT
GTGAGAGTTAACATTAACGTTTTTTTTATAGACTCGGCGGATGCCTCCTTTGCGAGTACT
GTATATCCGAGTCGGTATTAGACTTTCATGTGGAAGTACGTTTTTTCTTCTTCTGAAAAT
CTAACTTTCACGTATATTTTTCCCTTTATTTTGCTCGGTAAAATGTTATCATGTACTCCC
TCCATCCTAAATACTCTCTCTATACCTTATTTTTTTCAACTACAATTATTTAGGTACAAA
GGGAGTATAAGTCTCTCTAAAGATTTCAATAAGAATGACATATTGATGAATATAAAAATA
TTTTGGAGTATAAATCCGCTCTATTTGCTCCGTATGTAATCTTCATAAAGACTTATATTT
AGGAACAGAGGGAGTCTATGATACATAAGGGAAACTCCAAATAGGTGACCCAAACACACA
CAAAATATGTCCCATTTTTGTGCACTTTGGCCGTCAAACGGACATGCACATACGCGAGTT
CGACTGATGCACCCAATGATGCTACCCCAATTGGCGATGATGACATCTTCCGCATTTCGT
CCAACACCTAGCTGGGATGGACAACGGTTGTCGGCTCCACTACCCTCGGTGTTGGCGTCG
CCGTCGAGGGAGGAAGCGTTGGATATGCCTAAGGATGGATGCGGGCACGAGGAGGAGCTG
AAGCTTGATTACGACACATCTCAAGATGGAGCACAAGCAAAAACAACTGAAGTAGCACAA
CATAGCACACGCGTCACCTCTCGTGCTCGTCGATCGCGAGCACGAGTGCCTAGCTACCGC
TGCTGTAACCCCGACGTCGAAAGGCGAGGCTAGCTCACGATGCAGGGAGCTCGCGCTCGA
GCTTGGGCCGCCGCTAGCATGGACCTTCTACACCCATCCGCTCATGACAGGCCACCTCTG
AAAGTGCATCTAATCCCCGGGTGGTCTTAGTACTTCATAACAATTAACAACATATATCTC
ACTGAACTAATGCCTATTCAAAATAATATTTCGTGAAAGTTCAATTAGGTCCAACAAAGG
GATATGAAAGTGGACCCCTCAAAATGCTAAGGACAAGTGTTGGTCAAGCATCAAGATCGT
CCTGAATGGATCATGCATCCTCTTTCCAAACACCAAATGGGTCGGCCCGTCAAACAAATC
GTCCCTCCGCGGGACTCGAGTCACTCGAATATGTGCAAAGGTGGCCAGGTAAACCCCACC
GGGATGCGAATGTGATCCGTCCTAACTTTCCCCTGATCACTCGGAGCCCCGGGCTCATCC
ACATCTGAGGCATCAATCCATATCCCCGAGAGATGAGTAAACATCACCGAATGAAGACAT
ACATGTTGGGGAACGTCGCATG