morexGenes - Barley RNA-seq Database

Contig contig_46816
Source Contig contig_46816
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46816 (7995 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_46816

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62654	5	1608 bp	MLOC_62654.4	Available	Available	LOC_Os05g43470.1, FRAME:+3, EVALUE:0.0, 13105.m04578 protein outer membrane protein, OMP85 family, putative, expressed
MLOC_62655	1	1522 bp	AK359987	Available	Available	None
CDS Structure of MLOC_62654

CDS Structure of MLOC_62655

Contig Sequence (7995 bp)

>contig_46816 7995 assembly3_WGSMorex_rbca.fasta
CCCTCCCTCCCTCCCCCTCGCCCGCTCCCTCGTTTCGTCGCCCCGCGCGCGCGTGCCTGA
CGTGTTTGTGTGAATGCCGCAGCCAAGGTGGATTTGCACGTCGACCTCACCCACATGCTC
TGCGAGGCCCTCCTGCTGCCGCCCCTGAGGTGCTCGCCCTTTCGCCCCTCACTAGAAGCC
ATTGGTTGGTTTCGTTGCAGACCTTCGATTGCTGACTCTCTTGTTTTCTTGGCCTGCTTC
TTTTCCCAGCAGCTCCAGCGCCACCATCTCGCAGATCGTCGGAAGGTTCTCATTCCTAAG
TCTATAATTTTATTTTCACGCGCCTTCCAGGATTCACGCGGGCATATTCGGCTGATTCGT
GCGCGTGTTGCTGTGTTTCACTTGACATGCGTCCCGGAACACCTGTCTGGGCTTATGAAT
GATTACTGCTTCAACTTTGCACCGTTTTGTTCTGAGCTGTCAAGTTTGGTCTGCAGGATC
TCCCTCAAGCACCCGAGCCTGTTTGGGAGGAGCGAGAAGTTGGACGTGGTACTGGATAAG
GGTGTCAATGACTCTAATGTCGTTGTTGCCTTCAGGCGCCCAAGGCCCGAATGGTTATCG
CAGCAGTCGTTTGTCATTCAGGTCTGCATTCTGTTTGATTCTATCTCGGCTTCTTAGCTG
GGCCTTCTGTCTGAAATTAAATAAGCATGCTGCACTGCTATAGCAAAAACATGTTATAGC
GTTTTAAATTGTTGCTAAACAATTTATACTCCTTTGATCTTGTTAACAGTACTCATTTCT
CATTTCCATTGATATTCTAAATCTGTCGTGTTCTCTGCACTAGAAATGGGTAAAAGAGAT
TTATTAGAGCGATAGTTGATCTTTTGATCCTAGTGTTCACGAGATATAGGGAAACATTAA
ACCCAAACACCGGATGACATATTTAACACTAATCACTGTACAAAAATTGAAGGTCTCAAG
TTAATTTTCTTCTCCCGAGCAAGGAGAGATATCGTGGCTTCTTTGATCAAAATTGAAATA
GGGTCTTGAGTTACTGAAAACATTGAAAAAACTGAAACAGAAACAAAGTAAGTACAACAA
TACACCTGTATATATTGTGTGATGGGCCTGCAACTCAAATACTCAATGATGTGTCTTGTT
CTTGATTAGAATTGAGAATTAGTAGCTAGGTCCTCTCTTATGTTGCATGTGTGGGGCTGT
GGACCTGTGCTACTTTACATGTTGCCACTTGCCAGTCTATTTCACTTGTTGCCAGACCAT
CACAAATCACAATCCCTTGGTGCTTCCTACCGACCCGAGGTAACCGCCTTGGCATGCTGG
GGCGTTGGATCCACCAGTGTCTGAACTTATAATGAAGTATTAAGCAGAAGACATTATTTG
CCATAGTAATTGGAGCAGTTAATGGTTCTATTATCTTGTGAAGTGGTAGGTATGATGAAC
CTTATCCCAGAATAGAGTTGCTCATCATAAGACCGTCCCATAACTATTAGTATTGGTGGG
AAGACACCATCCCTGGACTTTCTGCTTGTGAGGGATGAGGTGGTGACGGACCAATTCATT
CCATTCTTCGAACCGAACAAGTGGATTATGTTTGGAGTTAAGATTGGATGGTCCATTCAC
GGTGTTGTTCCTCAAACCAAACCCCTTATTAATGTGCTCGTAGTCTACACTGAGCTTGAC
CTTTGTCATATTGTTTCCATTATGAATGTTCAGCTACTATGATGAAATTTGGTTGGGTTA
TGTTTCAAATCACTACCTAATGATCTGAACGCTCTTATATTTCTTTATGGAGGGAGTAGT
TTCGAAAAGTGGTTAGGATTTGTAAGTTGTCTTTTCTGTTCACACATTTTCTTGTTTCCC
TGCTTATTTGAGCAATCAGCACTCGATGACACCAGAAGTTGCGGTGCATGGTTTTCCTGC
TGACAACTTCACACGGTCAGGGAGCAGAGGGGTAAATCTAAGTCGGTTGTCGCTTGGCGT
GGAGATTAATGAACCGACAACATCAAACTGGACTTCTGGAACCAGTGTTAAGTTTGAGGT
GAGCATCTAGTAAAATTCAGTTGTTTGCATCTTTTTCAGTCTGTACAACTTCTCTTATCA
GTTGTCCTTTCCCTCCAGCATATCCGTCCTGTTAATAATGATGGGCGTTCCATATCCAGG
GACCACGATGGCTTTCCCCTAACATGCAGGTAATAGGAGTACTTTCTCGAACGTGCCCTT
TGATACAGTAAAGAGAAGACTATTTGTTTAATGTTCTTTCATGATGCAGTGGTAACCTCC
ATGACAACATGATTATCTTGAAGCAAGAGTCTGGCTACGCAGATGTTAAGGATAATAGCT
TCTTAAGAGTAAGTTTGTCTCTATTTCATCTCCATCTTTACTTGACTTGACTGTAACTCC
ATCTTATCCTATAGTTCCCAATGACAGGTTAATTTCCAAATGGAACAAGGATTGCCACTT
GTACCAAAATCACTGACTTTTAACAGAGTGAAATGTACTGTTTCGAAAGGCATTAAATTG
GGGCCAACATTTTTGGTTACTAGGTACTGCATATGCCTACTGTACTGCAGCAAAACTCTA
CTATGAAAGTTAGTTAATCTCTTCCTATGCTGCAGCTTGACAGGCGGTTCCATTGTGGGC
GACATGGCACCGTATCAAGCATTTGCAATAGGTGGACTTGGTAGTGTCCGGGGTTATGGC
GAGGGTGCAGTTGGTTCAGGAAGACTGTGCCTAATTGGTAACTGCGAATATACGGTCCCT
TTGGTATGTAAAACAACAATCCATATATAATCCCCAAAACAATTTATGCAGTCTGTAAGT
CAAACTTGGTAACCGAAGAACCAGAAGTAACTAGAAGTTGCATCCAAACATGGAACGGAT
AACAAGATGCAATCACATAGACATGTTCATATTTACTTGGACATATATTGTTCTCTTGTT
TTGTCATCATTCTTACGTTATGTACTTTATGCAATATTCGCCTTTTTCTTCTTCTCCTTT
CCTCATTTTGATTTGTTACCTTTTCTCCTGTTGCATATACGGGTCAATTAATGGGATAAT
AGTTAATAGGTAGTGTCTGAATGCAAGAGAAATATATCAGATACTGCAAAGTACTGTGAT
GAGGAATTGTGATTTAAGGGTACAAATTTAGGGCTGAAATTCAGAAGTTAGCATTCATAG
GAATTTATCTCTTCTAATAAACCTGCTTAATCTTGATACTGGAAGAAAGAGAAAATGAGA
CATTCAAACTATATTATCTATAACATAAAGGCCTACAATTGGTTCTTCTTCGAGAATAAG
CAAGTCCTATCTCTCTAAAATAAATTAACATGGATTTTGGTGCTTAGTAGATGAATTTCT
CCATTTTATATTTCTATGGTAGTTGACCGGTGCAAGTTTCATCAAGTCTGCATAAAATGG
AACCAAAGTTCTGAAGAAATCATGTGGCATATCATTTTCAGCTCTTTAAATGCAACCAGC
ACAATGAGGACATTTCCTGTGGTTGCTAAATTTGTGATAGAGTTTTGTTGGAGAGAGTTA
CACCCCATTGGTTGATCAATATTAGGATTTTGCATAGGGAACATACCACTTATGGCTGGA
ACTACTCTATGAGAATACAAAATTTTCATTGAATTTACATATGCTTTGGCAAATTCTAGC
TAGACTGCTAGACGGAAACATTTGTGACTGTTATGGTAGAAAGTGAACTCTTGTTAGTGC
TGTCACTTTAAGTTTTCTCTAGAGGTGTATTTGACTATTAAATCATCCACCACCACCGGA
AATCCATACCCGTTGATATTTGGTTTATCTTCTTGTGGTAGTCTTGTCCCCGCTTGGATA
CCAATAAAATACTAAAACGTCTGTTTCTGTGAAGGCAAAGAATCTCGAAGGTTCACTGTT
CATGGACCGCGGTAGTGATTTAGGATCTGCTCGTCATGTTCCTGGTAAGGGCTTCACTTC
ATCTTTATATACTTGAGTACTTAGTAATTTCTATTTGCCTCTTTTCTCAAAATAAAATAG
AAATCTGATTGCAACTAGAAGAAAATGAGGCCGATATACTTAAGCTTTTCTGATGCTTCT
AAAATTAGCAGTATAATTCCTAAAGTAAAAAATGAGGGGCTTAATTTACAGTTGCTCACT
ACCCAGCTATACTAAATTTACAGTTTTGTGTCTCTGTGGAAAGCACACACACATTCTTCA
AATAGTCAGAGCTTATTATTAAATTTGATTTGGAATTACAAAATTCTGTAATACAGTAAA
AGCTTAAATAATAAATTCTGGCATTCTGTATGGGATAGCCAAGATCAAGATGTGTCTGCA
GTGGAAAATCACGCAAATATTTCAGAGATGTGATGTATCAACCAATGCAAATTGAAACAA
GTAAATTAACACATCATCTGATTTGACTGAAGCAGCTAGCCTTTATTAACAGAAAGACAA
TGCAATCGACGTCAGTGTGTTGTACTATAGAATCAGAAAAGAGTCCTAGTAGAGTCGTGA
AACATCTTTTTGGATGCATGCTCGGTTATGAAACACTTAGTGATGCAATATATCAATGTT
GAGTTGCACTCTATACTTATTTGATATCTCAGTATGACATTTCCTTGACCATACTCATCC
CATCCTGCACTGTATACTTATTTTGTTCAATGATCATTCATCATTTACTAAATGATGGCA
GGCAATCCAGCTCTTCGGCAGGGGAAACCGGGATTCGGTGTTGGGTTCGGGTACGGTGTC
CACTTCAACACGGACATAGGTCAAATCCGGGTCGACTACGCCATGAACGCCTTCAGTCGC
AAGACCTTCTATTTCAGCATCAACAGTGGTGGTGCTGGCTCATAGATCATCCAGCACATA
CCTGACATAGCATAGAGTTTACAAGCCATGACATGAGATCATTCCCAGCAATTTTCCATT
CCAACGTGCCTGGACGCAACAAGCCGGTGTCGGAGGCATTCGAGGGCTGTACATTCGAGT
TCATCGTTATCTTCTTTTTCTTCTGCTGCTGTTGGATGCTGCACGGACATGCCATGGGAC
GACATCTGCAGAGAACAAAGGTGTGGCCTGCACAGCGTCGTCGGTCGAAGGTGTCACGCC
GTCTTATTCTTTCGTACAAAAATAATTCGGCCCCTTAGTCGAGGGAGAAATATGTTTTCT
TTTCCTCTATTTTCCTCTTTTTTTTTTCATGAACTGTACAGTGTTAGGAGGAGCTGTTTG
ATTTGCCGCCACGAAATTTTCGGCCCGAAATGCTGTCACGATCATCGCTAATCTGACCTG
GCTTGTGGTTGTGATAAGCTCATGTTGCTATATGGTAGCCAAGCCATGTCATGTCAGGTC
AGGTCAAGTGCACCGCTCTCGCCGAAAGGGAACTAGATGGTGCAATGTTGTCCTTATTTT
CCCAGTTTGATTATTGTCCACGGAAGAGATTGCCCGTTTTCTACGTTGGAAAGCACCAGC
TGCACTCGGCTGCCACACAAACTGGCCTCCGGTTTCCAACTTGGTGACTCTGAATTTTTG
AAAACTACGCATCTCGCAGCGAGGTCGTTCAGGTGGATCACCAAGATTATACTGTACTCG
AATAGTCTACTGGTGTCGTTTTATATCTCTTGATTTGCACGAGCGAGGAGCTGTTAGATC
CAATCGCATGGATGCTAAGATCATTAACGAAACCCGAATCTTCTCTAGGCATACAAGGCT
TCCCATGACACTATTATGTGTTAAATAATTCCAGATACCAGTACTGGTATGTAATTATCA
ATCAAAACAAATAGAGAGTAATAGTCAAACAGTGTAGTGGGGATCTTGTCCATGTTCGTT
CACTCATCAAAGCTACAAGGTCAATCCACTGTGGCGTGCAAATCAAGATCCAAACTTTGC
TCCTAGGCAACAATGCCAGCCAGGAGGCATCACCGACCAAGCGAAGCAAGCAACAATGGA
GGCAAGCGACGTCCCTGCGTGCGTGCGTGCGGAAACCAAAAGGGAGCGTGGAGCCTACTG
CTGCACTACTAGACCGGCGAGGTGGCCTCGAGGAGCAGCTCCTCGCCGAGGACGCCGTCG
ACCTCGTCGCCGGTGATGCGGCCGAGCACGAGCACGATCCCCATGGCGAAGGCGGCGTCG
AAGCCGGCGCGCACCCAGAGCACGAACACGTCCCGGCCGAGCAGCACGTGCGCGCCCTCG
TCCACCTTCCTGCGCACCTCCGCCACCACCGTCTCCTCCTCCCCCTCCTCCTCCGCCACG
ACCACGCGGCAGCACCGCCTGGGGAAGGAGCCGTCGACGCGGAGCTCCTTGGCGGTGCCG
GGGGCGAGGAGGTCGACGAGGATCCCGGACCCGGTGCCGAGGATGGAGGAGCGGCGGGCG
GAGAAGAGCGGCTTGGCGCCCGCGGCGACCCCGTCGCCGAGGAAGCCGTCCCAGCGGTGG
TGCAGGCTGGGCCGGCGGCGGCGGACCGTGAGCACGGGGTCCCCCGCGGCCCCCAGCAGC
GCCAGGTCCCCGGCCGCCGCGCCCCCGCCGCAGGCCCCTCCCCGGCCGTACGTCTCGACG
CGGAAGGCCAGGTCGCCCGTCCGGTGGTCGTAGGCCTCCAGCCCGTCCCCCGGGGAGAAG
AGCGTGGTCTTCCGCACCGTCAGCTCCCTGTCCTCCTCCTCGCAGTGCTCCTCCCCCACC
ACCGCCGCCGCCGCCGCCGCCTCGCCGCCGCTCCCCTTCATCTCCCTCTGTGCTGCTCTG
CTCTGCTCTCGTGTATGTGTATGTGTATGTGTATGTGTGTGCCTGCTCTCGCCGCGCGCA
GAGCGAGGTGGTAAATAGCTTGGGCGGTGGGGCGCGCGGGTTACGGGTTAGTGGGGTCAG
GTCAACACCCCCCGCGGCCCCACCCCAGGAGCCTACGGGCACCACAGGCAGGTGGTGGCC
GGGTGAGGAGAGGGAGGGAGGAGGCGAAGGCCGGCGATGGCTGGATAGGGAGGAGGCGAT
GGGCGTGCGCCGTGCGCCCGGGGGCGGTGGGCAAGTTCGTTGTCGAAGCTTTTGGTTTTG
GATTTGGGTTTGGGTTTGGAAGGGAGGGAAAGGGACCCGAGCCCGACTGGAACCGTGGGA
GAAAGCAAGCAAAGGAATAATGGGGTCGGCGGGATGGTGAAAGATAACGTAGTTAGGAGG
CGATCGCGATCGTAAACCACAACGTAATTGGAGCTGGAATATCATGTTTCTTTGCTTTTC
TCCTCCTCCTCCTCGTCGTACGGCACCGTACCGTATCGCATCGTGCAAGGGCGCCAGGTA
TGAGCGAGAGATGTTCGGATAAGATTGTTTATCACTGTAGCACGTAAGTACGTATGACGC
GGGTGAGATTGCGCATCAGCCTACGAGTAGGGTTCATCGCCGATGCCAACTGACTAAACT
ATCGAGGCCCAGGCCGTGGTGACGCGTGTGCATGGACGGGCTAGCTAGCACGCCGACGCC
GGGCAGTGCGCGCGACACCGCAACGCTCGGCTCGGCGATTCGATTCTTCCTTTTGGGTGC
GAGGATGGATGGATGGATGGGCGGACGGAGGCTTCGGAAGGACAGCTTCTTCTTCGCACA
CGCCTGAGACGGTGAGACCCACGCAAAGGATCCGATCAGCTGCCGCCCCCGTCGGCACTC
GGCACGGCGGCCGCGTGGTCCGGACGGACCTTGGGTTGGGTGCTGTCTCTCGGCTCGGAG
ACTCGGTGTAGACTAAGGCCAACTCCACCGCGCGATCCCAAACGGTCGTTCATTTTACAC
AGATTCTGTCCGTTTGGGTAGGACGATGAGGTCGTGTCCGGGCCTGTTCTGGGATGCGCT
GGCCGTGCGTCCAGCGCGTGGTCGCATCCCTTTAACCTATCCTATCTGTCGGGGCCTGTC
CATATTTTCGTATCAAAGCAAGTTTGCACATCAAGCCAATCAAAATTGTCTTTAAATAAA
ATAGTTTTACAACCAAATCGAAATTGTCTTGAATGAACATAAAATGAACCAATACATCTA
TTGGTTGTCAATATG