morexGenes - Barley RNA-seq Database

Contig contig_46809
Source Contig contig_46809
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46809 (7573 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_46809

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62649	1	1267 bp	MLOC_62649.1	Available	Available	LOC_Os07g26630.1, FRAME:-3, EVALUE:3e-133, 13107.m02641 protein aquaporin protein, putative, expressed
MLOC_62648	1	733 bp	None	Available	Available	None
CDS Structure of MLOC_62649

CDS Structure of MLOC_62648

Contig Sequence (7573 bp)

>contig_46809 7573 assembly3_WGSMorex_rbca.fasta
CTTTAGTCCCGGTTTCAGAACCGGGGCTAATGGGCTTGTGGAACCGGGACAAATGGGCCT
TTTTCTACTAGTGTTCATCGAATAACTCAAACTCCTCACCGACTTATAGAGCGTGTGTAC
ACTTGCAAACTTATCAGTCTCTTAACCTATNNNNNNNNAAACCATCAAAATCACTAAGGG
ACACTAGGTGCACTTACATATGTGTTACTAATAAAAAGAAGATTCCACTAGCTAGCGCCA
AGAGCTTCTTAAATTGGTTCTAATCCAACTAGTAGCTACAACTAGAGTTGAGAAAGTATA
CTCTTCAATGACTTTTGGAAAAAAACAAGTTACCAAGGATGCAACTAGAACATGCAACCA
TGGACATGCAATTAATTTAATTCATGTAAGCATGCAACACATTTAATTCATGAAACCGTA
GACATGCATAAATACAATCAAAAAACAATAGTGGACAAGTATTTTTTTAATATGTTTCAT
ATGTTGTACGAACGAGTATTATCCTTTGCATTCTATGAAGTACATAATAAAGACAAGTAG
AAATTAAAACAAATAATATTATAGCAGTAACAAATATTTCCATGAACCATTCAACACTTA
NNNGAAGTATTATTTTTCAAAGGTTAAAAAAAGAAAAGTTTTTGTTTGAGTTAAGACAAG
TAAAACATGTGATAACGCTTTGCATTTTGCTGCATTTTGATTTACATTATTCCGTGAAAA
TTTGGTCAAAGTAAAAAAGAAGTAAAGACGTATATGTTTGTTAAAGGTTTATTTGCCGAA
GCAAAATTTTATTTAGATATTTTAGTGCAAGCATTTTTCGCTAAACATAGGTGCCTCTAT
GCTATAAATAAGGGTCCGTGTCCCTATGCGAGTGGGCTGGTTTATCTTCGGACCTGGTTA
TTTTCTCACTGTCCAACATCTATTCGGCAGCCCTGATTTTTATACTACAAACTAAATTTG
GGTGTTCACTTTGTTAAATGAAGAACAAAAACAAGGGCATGAACACTAAATAATTTTCCA
AATTAATGCTTCGATTCAGTTACATGAACTTGGCATAGCGCATAGACCATGTCCTCTGCC
CTGACATGCCTAAATGCCCACTCTAATGACGAATGAACAACAAGTAAAAGAAAAACAGAG
CAATGATACAACAATTGAACCCCCTGCCATGATATTTGCTTGCTTCTGTAAATCGACCGT
CTGCATTAGATGTTTCTTGATCTTCTTCAGTTCCTCGTTCAATTCGGGCTCCGCGTGCAA
TTCAGCATTCCGTGCATACCTCGCCATCGGCGGGATTATGCCCGCCTCTTTGTTCGAGCT
CCCCAAATTCTCCACAGCAATCGCCGGCACCCCGCCCAAATTGAGCTCCCAGGTTGCGGC
CCAGCTTGAATCATTCTAGCCCTCAAACTAAATCCTCTCAATATAATCATCCATCCACTC
GAAATGGATACCTTTCTTCAGGATCTAAAAACAACAACATTAACCCTAAATCCCAAATTC
GACGAGAGAAAACGAAATATGAAAAAAAAAATCAAAGCAAACGACAGAAAAAAAACAGGC
TAAGAACTGAGATCTAACCTTGTCATCCCTTCCTGCCATTGTTTTGCTCAAGCATTTCAT
AAATTTGCACCCAAGATTACCATTATCATCAGTCTTACGGACCCACCGTTTAAGAAGCTC
TCGATGTAGGCAGTGAAGGCACCTTGTGAGCAGCAGTGGCCATATTGTCGTCATTTTAGA
AGTGTGACGGAAAAGATAAACATCTGCGCTAGGTCATCGAAGAAGAGGGAAAGGGAAAGC
AATGAGCGACGACGGTGGGCACGAGGGCTCATCTCTTCTAGCTGTGAAGAGATGGGTTCC
GTGCTTACATGGATAAATGATGGGTCTCGCGTTTACGTGAACAAATGATGGATCCAACTC
CTTAACAACTAACGAGCGTTTAAATATGTCGCACCATAGTCAGGAGCTATTGGCCCGCGG
CCGACGGCTGTTGGCCTTGCCGGAACCGCCCACGGGTTGAAGTCGCGTGTGTGGCAAAGG
CGAGGGTTTTTTTTCCATGCGTATGGTCGTCTCGGAGGAGAGATGGAGCTCGCTCGTTGT
GGATTAGTGGAGGAAGACAGCAAATCTGACAACTCCGCGTAATCGATTAGATGGCTGCTA
GTTGACATGCCGAAAATTGGGCAGGTCGGCCGGCGTCTAGCGTCGCCCCAATTTAAAACT
GAATAAAAATTGTTATTTTTTGGCACTTTTATTTTTAGAATTTTTGTTGGCCCAAAACAG
GCAGTGTAACACAAAACGATCTAATCCGACAGGATTGTCCAGAAAACCAATCAAACAAGA
GTGAGTGCCAATTATCCTTGATGATCAATAAAGCGTACGTGACATTCTCTCAAAAAACAA
AACCAATCAAACAACTGAATTTGTCTTTCTCATCACTTGGATTCTTCATCTGAATTTATT
GATTGGTACCTTGAACCAAAATGTAGACATGCCAGGTTACAACTGCTTCAACCTGGCGCA
CAAACACACACGGACACTTCACTTTGGCTGGTCCGGCACACTGCAGACTTCACAGTGGAC
TGAAAATATTACTACTCCCAAGGAGAAAGAGGCCAAGTTTTGGTGCGGATGGCTGGGCGA
GCTAGCTAGGCGTTGCTCCGGAAGGAGCCATAGCCCCTGGCGCTCGCGCGGAGGATGGTC
TGGTGGTAGAGCGCTGCGATCGCCGCGCCGATGAACGGCCCCACCCAGAAGATCCACTGC
GTCACAGATGAGCAACAATGCACTTGTCAGTTCAGGCAACAATGCACTTGTCAGTTCAGG
CAACAATCAAGTTGGACACTAAATTCCATAATTTCGCTCAGCTGGCACCAAGCATTTACC
TGATCGCTCCAGGCCTTGTCGCCGTTGTAGATGACGGCGGCACCGAGGCTCCTCGCCGGG
TTGATCCCCGTCCCGGTGATCGGGATGGTGGCCAGGTGCACCATGAACACCGCGAACCCG
ATCGGCAGCGGCGCCAACATCTTCATTCATCAACACCAAGTCAAAACGAGTGTACTTTGC
CATGACGATAGAAGAAAGGGTTCATCATCACAGACGGGGTTTGTGGGGTTACCGGGACGT
GGGAGTCACGAGCGTTGCGCTTGGAGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGA
AGGTACCGACGATCTCCGCGGCGAGCCCCGTGCCGACCGAGTACCCGGCCCCGACCTCGT
TCGCGCCGCCGCCGTGGCGCGCGTAGAGCCCGCTCTGGAACCCCCTGACGAGCCCGACGC
CACAGACGGCGCCGAGGCACTGCGCGGCCATGTAGAGCAGCGCGCGCACCAGGGACACCC
TGCGCGCCAGGAAGAGGCCGAACGTCACGGCCGGGTTGATGTGGTGGCCGCCGCCGGAGA
GATGCCGGCGGTGCAGTAGACGAGGACGAAGATCATGCCCCCGAACGCCCACGCGATGCC
GAGGACGCCCACCCCGCCGCACGCCGCGTCGGGGCCCGAGGCCGACGCGTCCGTCTGGTG
CTTGTACCCGATGACGGTGGACACCGTGATGTAGAGGAAGAGCAGCGTGGCCACGAACTC
CGCGATCACCGCGCGGTACAGAGACCACCTGCCCAGCTCATCGACGTCCACAAGAGGCGC
CGGTGGAGGGTCGGAGTAGTCCCGGGCGCCGCCGGCCTCGAGGGCAGACACGTCCACCTC
TTTGCCCATTTTAACCTAATCTGTCCTTTTCTTAGAGCTCTAGCTAGGATGGATGCAAAG
GCTACTTGGCAGGTAATAACTTAACTCTTGTGTTTGTGTTGAGGTCTCTGGTCATGACCG
GCGGTATTTATAGGGGGGTTTAGCCCATTGGGGACAAGAGGAAGGTTTAAGTTGGCATGC
ATTTCCTTAGTTTTGGAAAGTTTTTTCTTGAAATGCTTAATTTTGGAAAGTTGACGTGAC
CAGCCTGTATACATAGAGGGCGTTTCCTTTTCTGGCGTTGACGCGTGTTCATACTTCAAT
ATTCTCTTCTGGCCATAGCTAGATCTAGATGGGATCGTCCAGTCAATTTCCAACGTTTAT
TTCCCCTGAATAATCATTTATTTGTGTAGGGATTTACAGCTAGGCTCCTTTTAACCCTCT
CACACTGCAACGTTCTTAGCCCTCCGGTTTCATATCCCGGACGATTCTGGCCGCCAGATT
TTTTTGTGTTTACTCATGATGTCTTGCTATTTTTAGGGAATTTTTTGTAGCTGCCAGCCA
AACTTAAATTTGATACATCGAAACTTATGACCAATCATCTACTTTCCCTTGTTGGCTAAA
ACCCATTGAATATCCTCACTTCTTCATTGATTGTCATCATAATAAGATGAGCCCACATAT
CATGGTACTTCATCACAATCCTTGATGCTCAAATGATAACATTACCCAAAACTCAAACAA
AGAAAACGATCATGGTCGGATCCTGCCTTGTGTGGCCCAACAACCAAGAAAACCCACCCT
TACACAATGGGTTGATTGACAACAATGGCGGAGCAAGAAAATTAGGACAAGGGGGGCCAA
GTAGAGTTAAACCTTATCGGGGAGGGCCAATCCATCAAAAAAACACCATTTTAGCACATA
CAAAATAACTATTACTACTCATTCTTGGCTTAAATCACTAATGTTAGGGGGGGCTAGGGC
CCTGGCTGGCACCCCCTGTCTCCGCCACTGATTGACAACTTGTTCTGTGCTCCATCGAGG
TGACTTGACCTATTTACAAATCATCGCTGCACTCCCGTATGATCAACTTCGCTATAAGGC
CGTCATACACACCTTCGCTAATTTGCTTACGATCGCGCTACTAAGAATACCCCCTAATTG
AACTTGGAAGTTATTACCATAGCAACAAAGCAACTCTAGAGCAAAGAGCGGTGTGGCACA
ATGTGTTTGCTAGAATCTCACGTGGATTTAGCTAAAATATGTTGGGATTCACATTGCAGA
CGTTGATTAATGGCATGTGGGTTTTAAAATACTGCACACCAGGTTTTTAAAGTTTATCAT
CACAATTTTCATTGCTACTGATGTGGCAATGCGATGTTTCTATTTTAGAATATTCAATAC
CTTATTATTTTGAGGAACAAAGAGATTGGGGGGATACAAATGATTATATGTCATACAAGT
TTAACTATGTATTATCATATGTTTGATTTGTCTTTTTACATTTTAGGGGTTTCATCAAGC
GAGCTTAATAATAATATTTCATTAAATTCTAGTACCTCGAGGTTCACGTTTATTATTATG
AGATGCCATTATGTTACTTTGGTTGGCACTCCAATACCACATTTGGACATCTGATAGGCA
CACGGGGAGAGGTTTGTAGGACTAAACATACTCATGCTTCTTCGCGATCAACATTAGGGT
ACTACCAACCATATTGTGATGCAGTGTGTTTATGCTTGACAAGTTTGGCCTCATTATTTT
GAGGAAGTTCATGTCAATAGAAATGTTCCCATACCAAATTGTGAAGACACTATTGACAAT
TGGTTGATCTGATATCGGTATTTAATTCCTAAAGTACGGAGGAAGGGGTCTGATTCACTT
GTTATGCTCACATGTTGGAGTTTATGGAAACAAGGCAACAATAGTATTTTCTCAATATTA
GTTAACAGAAGAATATTTATGATCTCAGCTTTCCGATCATTCAAGAGCTTAAGTTGTGGA
AGGTGGCATGGAGTTTTTTTGTTTACCATCTTAAGTGAGTAATCCCTTTAGGTAGGGTAT
GGAGTGAGTTGATGTATGTGCTTCATTGGGTTGGGCAATGTGATAGAGACAAAGTTGTCC
GTGTCTTTCGATGAGATATGACTATCATTTATGGTGGAGCAGACTTTGACAATCTGACTG
CGAACGAGTGAAGACGTCGTGTCTTAGCAATCGCTAAACCAACTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTCAACCTAACCACGAGGGTCTGTTTCCTCCACGCAGACGGAGAAC
AAGCAAGAAACTAAAATTACAATCTAGACATTGCGAATGTAAGAAGACAACTTTATTGAT
GAAAGTGGGGTTTTGTGACATCTTGGTCCGGCCGTAGAACACAAATGAAGGACGCAAAGT
TACAGCTATGGCGAACTTATAATCTAAAAACTCAAGTCTAAACTGTGCTCTAAGAGCTAT
ATATATGGGGCAAAAGAGGGGAATTTTGTGACCCCTTTGGCGAGGGGTCGGAAACCAACC
CTAACTCAGTTTCCCCACACATATGGACTCTAAAAAAGCCTATAATGTGGTATTTAGAAA
TTACATGGGCTTGACCCAAAACTAAGATGATGTGACACCTATAATAGCTTATGGACGAAA
TTTATGAAGTGGCATATTGTATATTTCGTCCAAGCCTTCANNNNNNNNNNNNNNNNNCTT
CAAAGTGCGAAAATCACCACTGGAAACGTCATTTTTCCTTCCCGTGTGTGCACCTTATTC
TCCATGCTTGATTCCACTCCAATGGACATCCTTCTTGTTCGTGCTAGGTCCTTCATCCAT
AAGTAAAACAAAAGTATCTAATTNNNNNAGCATCATATGTTCATGAACATTAAAAGGATT
TCCAAGAAACAGAAGTATCTGGTAATTCAACTGGCGTGCGCGAGCTCTAGTAATTGGTCC
AATATGTATAGTTGCAGGGGTTGTGGGTGTAACAATCGTATCGATATCATCATCATCCTC
TCCTTCTTGAAATGAAGTCATCCTCGGCGGAAGCTCATCTTCCTCACCCAAATAAGGCTT
CAAATCTCCAATGTTAAAAGTGGTACTAACCCCAAACTCAGCTGACAGCTCAAGTTAATA
TGCATTATCATTTATTTTCTCTAACACCTTAAAAATATCATCGTTGTGTGGCAATAACTT
TGACTTGCGCAAATCAAGAAATCTATCCTTACGCAAATGTAACCAAACAAGATCTCCAGG
TGCAAAGACAACATATTTTCTACCTTGTCTCTAGCAAGTTTGTATTTAGCATTCATACGT
TCAATGGATTTCTTAGTTGCCTCATGCATTTTTAAGATCAATTCAGCATGTCGTTTAGCA
TCACAATTAACCTTCTCTTAAGATGGAAGAGGCAACAAATCAATAGTTGCACGAGGTATG
AAACCATACATAATTTCAAAAGGGCACATCTTAGTAGTAGAATGCAATGAACAATTTTTA
GCAAATTCAATATGAGGCAAGCATTCTTCCCACATTTTCAACTTATTCATCAAAATAGCC
CTAAGCATAGTAGACAATGATCTATTGACTACTTCAGTTTGTCCATCAATTTGGGGGTGA
CATGTAGTACTAAAAAGTAGTTTAGTCCCCAACTTAGCCCATAATCATCTCCAAAAGTGG
CTAAGAAATTTACCATCACGATCGGAAACAATTATATTTGACACACCTTCTAAGCGAATA
ATTTCACGAAAGAACAAATCAGCCGCATCGTCACTTTTATGACATGGTATAAATTGTGCC
ATTTTTGAAGATCTATCCATGACAACAAATATGCTATCCCTCCCTTTCTTTGTTCGAGTA
AACCTAAAACAAA