morexGenes - Barley RNA-seq Database

Contig contig_46701
Source Contig contig_46701
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46701 (8035 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_46701

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62560	1	156 bp	None	Available	Available	None
MLOC_62562	1	261 bp	None	Available	Available	None
MLOC_62561	2	2728 bp	MLOC_62561.2	Available	Available	LOC_Os05g35110.1, FRAME:-3, EVALUE:0.0, 13105.m03663 protein OsFBL22 - F-box domain and LRR containing protein, expressed
CDS Structure of MLOC_62560

CDS Structure of MLOC_62562

CDS Structure of MLOC_62561

Contig Sequence (8035 bp)

>contig_46701 8035 assembly3_WGSMorex_rbca.fasta
GAGCGCCCGGAACGTCTGTACGATCAAGGGTTTCAGTTTCAGGGTGAAAATGTTGTGCCT
GAGCATGGAGGAGCGCCAACGTTTGAACAGTTCATCCAATTTCATCAAGACATGCGTGAT
TGGGAAACTCACGTGCAACTACAAAATGATTTGGTTAAGGATATGTGGGCTCATGTTGGC
AAGCAGTAGATTTATCTTCTTTTATTCGTTAGCAAAACTATGTACGAATTATGTGAGGCA
TTTTTATTCGGCTTGTAATAACTATGCTATTTTTATTCAAACTATGAAAATCATGCAAAA
TAGGGTGGCCAGCCGGCAATGCCGGCACATATGGGTCGGCGCGTTGGACGCGCTGCCGAC
TCATATCTAAAACAGAGCGGACGCCGGACGGGTGGCCGACCCAAACAGACAAAAGGCAGA
CGAAATCGTTGTCGTCGACCCGTTGGAGTTGCTCTAAAGACTTATATTTAGAAACGAAAG
AAGCAATTTAAAAAAGAAATGGACTGACAGAGGAGATTGAAATATTTCCTCATGAATAGA
TTTACGGCCACCTCACCTTTTCCCCCACTCTACACGGTACAGATTTGGCTTCTTGCCCCT
TCATCAAAAGACAGATGGACTTTTTTTTTCTGATGAAAGACGTTCAAATGCCCATAAGCA
TGAAAGAGCTGACCACACCTGCCGTGTGGTAAAAGACAAATAGACTTTGCAACTCTCCAA
TTCCCAAATGATAAGTATCATATGTGCCTACTGCCTCTGACGTTTTTTATAACTGAAGTT
ATGACTAAAAACAAAAACCAAAAACCACTGAAACTTGCCATCCGAAAAATAAATTGTCAT
ACTTGGTAACTAAAGTTGTCACCACCACGTCACTGAAATTACCAATGAAGAACGTTTGAA
GTTGACATCTGTTCATGTGGCTATTCCGTGCCACGCGTGTGGCACTCATCAGGATCTTTA
TGAATTACCCAGCTCACCAAATATCCCATGCATAACCAAAACTCAATTCAATCATTTAAA
AAAAAGCAGTACTTCGGATCAGCCATATCATTTGCTACCAAGTGCTTAGCGATATCTTCG
TCAATAAGAATACGCAGACTGCAACCAGTTTCTGCCCATATTACCCTAAGCTGCAAACCA
CTGATCCCCAGTATCAACCGACAGATCCTTCATTGAAATCCATCACATACATAGCATGCA
ACTTCTTGCCAGTTTCAAGAATGGCATGGGAGAGCATGCAACCCTCCAGCCATTTGCCGC
TCCATGGCCGCGTCAGAGTCCTCATGATACAATAGTCCTACTACTACAAGATTACATTTC
CAGGTTCCGAGTTTATATACACATCTTCCTCCACGCCGGGACCAAACCTCCCCGCAACCG
CAAGAGGCACACGGCGTTCGCCACAACCAGGAGCGCACGCACATCCTCAGTACGCATGGC
TGGTGGCCTGCATGGCGCTTCCGGCACGGTGGCGTTGGAGGCCGCAGGCACAGTGGACGT
TAGTCAGGCTGAGGCAGCCGCTGATGATGAGGGAGTGCCTGTCTGGGCAGGTGTGGAGCG
ACGGGAAGGAGTCGCAGACCGCCTGAACCGCGGGAGGCGTCAAGGCCGTGCACTGGCTGA
TGTTGAGGTTTGCCAGCCCGTCGACGTCCTTCGAGCTGCTGCTGCTGCTCCTCATCGTGC
CCCATCTCCCTCGTTTGCTCTTCACGCAGCTGTTTGCGAGGGAGTACATGGCACGGTCCG
TGATGTTCTGGCAGTAGTACAGGCCCAATGATCGCAGGTGCAGGCACCCGCTTGCAAGAG
CAATGACACTCTCGTCTGCAGTGAAAGATTGGGTACAATTAGTGCTTGTCTAGATTCTGA
AAGAGCGGCACAAAAAAATCACTACTATCTTAGCTCCTATTAGTATCAGTGCTTGTTTAG
GTTGTATTAGTGGAGTAAATATTAACGGTTTGTTGAAAGCCTCTTATGATCACAACAGCA
CATCAACACAAGTGCTTCAGAGTTCAGAATGCTATTTTCATATCCTAAAATACAACCTAG
AAGATTACAAATAATAGAAACAAATATATCAGCAGCTTTGTTTCTCATTCAATCAATGAA
GAGCAACAGGTTACCCAAATAATTAGTCGTAAACATATGTGGTGATTACCTGTTATAAGA
ACACAGCCACACAAATCTAGGGCCCTGAGATCAGGGCAACCTGATGCCAAGCTGGTGACC
CCTTCATCTGTGACATTATCACACCAACCTAGGTTTAAAGATTGCAGGTGCCCACAGTTT
TGGGCTATGGCCTGCATCGAGATTTCAAGAGATCAAACACAAATTCATGAATACATGCTA
AGTAAATCTTGGGTTAAGCGAAATACCTGCAAAGATTCATCAGTGGCTGCCTTCCCACAT
CCACACAGATTCAAGCTCTTCAGGTTTTTACAGTGGCAACTAAGGTAGATTAAGGCACTG
TCACTGAAACTGGAACATCCACTGATGTTCAGTTTTGTAAGCCGAGGACATCCGTTGGCC
AATGCGTACAATGAGCGATCACTAAGCCGGAAACTTCGGCTGAGGTCCAACTCACGTAGA
TCATAACAGTAGTTGGCAACAGCCTCTACTGCACTGTCTTCAAGCTGAGGTTTGATTTGG
CGAAGAGTGAGAACCTGAAGCTTTGTGAACTTGTGAGCAACTGATATTGTTAAGTTATTC
ATGTTCTGCTGGCACCTGCAGATGGTACAAATTTAAGTTTGAGCAACAAATTCTAAAAAG
TACAGACCACCAACACCAATTATAAGACCATTAAAATAACCTGAAGGTTTACAGGAAACA
TCAAAATGACGCATTAATTAATTAGGAATAGAAAAGAAAAGAAAAGGTCACATTTATTGG
TGCTCCTCAGGGAAATATGATATCCTTCTAAAATTTACTGACCGGTTTTCATTCAGGTAG
CTTGCCAGTTCCATTTTTATTTATTTTTACATTTACAGTTGCTGGCAATGTAATTTTTTA
GCATGTAAAAAATGTTAACTGAAATAACTGACAGAAGATCCACTGTCTGATAAGCTTCAA
TTCCAATGTGTTGCATCTCTAGATTCGTTTTTGGAGTCATTAATTATTTTATGGGTCCAT
CAGTTGGATGATCACCATGACAAACTAAAAGTAAGTTGTTATGAAGAGGTTTTTTCATAC
TCTATTTATGAAGAGATTCAAGAATCAAGGTAGTTGGTGGAAGCTCCTCATATTGTGATG
CATACGCATGCATCCATGGTAAAAAGTGATAACTTCCATAAACATAAAGCAACTACAAAG
GTACCAGCTGTTGCAACATAATTAATAAAACAACGTGTTGTTTTCAGAACTGAAAACAAT
AAAAAGGGTAAGGTGAAGACTTCAGCGCCATGTAGGGCGGTGGAGAACGAGTTTAAGCCC
ATGGGATTGATTAGAGAACACAATCTAGTAACAAGGACATGTTGTCATATCCGAATTTCT
CAGTTCAAGAGCTACCCCACCACCGTTTAATAATTAAAGTCAGATTTGAAGTATTCCAAC
AAATCTATACAAGGGGTCCCTTTACCTAAAGTGTCTAAACGTAATGTTGAGGAAAATGCA
GCCCTCTTCACACGAACAGAACAAAACACCTATGCTGCTCTGAAGAACTAGGCTAAGAGA
TACAGAGTTACTCACCATGAGAGGGAAAGATTAGTGACCCCCCACCCTAACGCGTCGCGC
CAGCCAGTGCAAACACCGGATGCCACAACGACAGTTCGATCATCTCCAGCAACAGATACG
ATCCGCATAAGCAGCTCCATTGGAAGGTCCTTCCATCCTGACAACATAGGCATAGCGCCA
CCAATTTCAGCCTGCCCCCTTCCGCCACCGCTAGACACCAAGAGGTTGCTGAAGCATGCA
TCCAATTCCCTGTGTACTGACCTCGCACTAACCATTTTCAATTTTACTTGAAGTATCAAT
GTACCCCTGCGATTTACAGGCAATCCAATCAATAAAATGTAATCCTACATAAAAATGGCA
TGATATGAAATATGACCTCTGCTTCCTGCAAACTAAGATAGGTGATAACAGCTGCATTCA
GAGACGACATATCAATCAAGAAAATCGTACAAGGACAGCGCTAGCAATACTGATTTACTG
AAAACACATATAACAGCATAATAAGATTAAAACAGGTGAGTGAAACAGCAATAAACTAAA
TTAACAGGCAGATGACCAAGAACAAACTTGAGAATGTGAGGCTAATTATGTACGTACCTA
TGTATAATTGGAAAAGAAAATAAGAGAAGAGGAGCTGAATGGGGATCCAGAAGAAAGCTA
CAGCCCAACCACGGATACTGTCATGGCAGGAAAATCTACGAGATGGAGAAGCTGGAATGT
CAAGAATCCACAGATGGACAAGTCGTACTACTTATAGAACTCTACCAACATGGGTGGGCT
TGGATTAACTTGGCAGGCGCAATGAAAGAGCAAACTATATAGTATATCCTTAAAATAAGG
CGAGGGAAACATTGCGGAGGCTTCTAGGGATGAAAGTCTGGACTTCCTCTGACTTTTGAT
GAGCAGAGCAATAAAGCCGTCGAGCTCGCTAATCTATGATTATAGAGTAGTAATCGAGGT
CGCTAATCCGCGAGAATCCATCGGAAAAGCCGAATACCCGGGGCGTAGGATGGAGACGAA
GCCCGAAACTTGAGGAATAAATCAGGCAAAATGCAAACAGCTGGTACGGGTGATCCTCCG
GAGCACTCAATCCCGATTCCCGAGCAAAACACAATTCGACAACTCACCCAGCGTGAGCAC
CTCGACCCGGAGCCGGAGAGGAGACGCGGCTAGGGTAGGGTTGTTGTCGAAGAGGGAGGG
ACGCCCGTGGCCACCGCGCACCGGACCGAGGCAGGCGGAGGCCTTGAGCTTGAGGGTGGC
GAGGAGGAAGAAGCTATAGGGGCGGGCGAGGAGGATGCTGACGAAGCTGGCGTGGCGCGT
GCGTGCGTGCGTGCGGGGAAAGGAAGGGTGGCTATATCCGGCCGGCCGACTTTATTAGGC
CGGCGCCGATGGCTGGGGCTTGCCGACACGGCCCCGGCCGCCTGGGGCGGAGATTTTTCT
TCCCTCCCTTCTGTTTCTGTTTCTGTTTCTGTTTGGGGGCGGGCGCGCGTTGGCCGGACG
GACGGACACGAAAGGCCGGCGCTTTTTTTAACGCCAACCAAAAGGAAAAGAAAATTCCTT
CCTCGTCTCGAGGGCAATCCATTCAACGCAACGGAATAGGCCACCGGTTTCGTTGCCGTC
GTTTTCGCTTCCGTGTTCCGGCGGAGTACTCCTCTCTCCGTTCCGCGTCACGGACGGGCG
AGCGTCCACGTCTGCTCCGTGGCCCATGTCATCCAGTTGAGGCGTTAGGCTGGTCACAGC
CGGGGTATCATAGGTAACATAGTTTTAGGACTAGCAAACATGATGATGTGACAAATAATT
AAAGAAGAGAGAGGGTTATACTAACATAGGTAGATACCGTATTATGTTAAATGTTATGTT
ACTATGTACTCCCTCCGTTCTTAAATATAAGTATTTTAAGATATTTTATTAAGAATCTAC
ATACGGAGCAAAATGAGTGAATCTATATTCTAAAGTATGTCTATATATGTCCATATATAG
TCCACTAATGAAACCTCTTTAAANNNNNNTATTTAGGAACAGAGGGAGTATCATGCATGT
CAATAAATGAGAACATTTATGATACTAGTTTATGATACTATGCATTATGAAGGTAGTATT
AATAATAACATATGCATGATACTATTATATGTTACTCCCCACTATGAGCAGCCTCATGGT
ATTGATGTCCCCGGCGGAGGAGATCTGCGTCCACAAGTCATGTTGTTGGGCTGTATACGT
GGCCTGTCGTCGCATGGCTGCGTGGCCACTGGCCAGCGCCGTGTCTATCCTAGCCACTTG
ACGTGTACATACTACCGATGCGGCACGGCGCTGCACCGAGCTTTCAAGTCCCACAACTGG
CTTATCTCCGTGCAACTGCAAGTGCAATGCAACCGGGACGATTCGATCAGGTTTGAATGG
ACTGCAGGTGGCCATGAGCAACCATCATCTCTCACCTTAATCATACATTTTCACAAGGAC
CTGCTGTGCTCTTCTATGGCTTTTACTCACCTCCGTGCTTAATGTTACTTATTATGTTAC
GTAAAACATTCCGGTGCTACCCATATCAGGAACTTGGAACTCTTTTCCATCAAAAAAAGG
AAGTTGAAATCTTATCTGGTAAGCTCTTTGTCAAGTTTTGGCTCTGCGTGGACCAAATAT
ATATACCGTCTTCTTTCGTTATTTCACCCGTCGCGATGAGCCGCTGGTCGCTTTCGACTT
GCCGCCTGCCGGTGTGTGCCGTCATCCGGAAGATGACAAGTGATAATTCTGTACGTGCAT
CTATTAGCTGTGGCGTGTGGGTCGTAATACTCCACATCCGCAAGCAAAAGAACAATCACA
CACTACCCCGTCCTACCATGTCACCTCGTGCGTGGCTGCTCCATCCGAACGCATCCATCA
AAATTCATTTCCGGCGTGCCTTTGCAGCTTTGCTACAGTACGTTTTCTTAGATCTTTGTA
CATCGACGTGCCGTACAAGTGGTATAGAAATGACGCATTGTCCCCTCGGAAGCTAGTTGG
GACACAGAGTTTCTGCAAGTTGTTTTTGCGGGAAAGAGTTTCTGCAAGTTTGTGGCATAT
CTGGTTTTAGAGTTTCCACGGAATCTTTACTGTTAATCTTATACTTCCTCCATCCCAAAA
TTCTTGTCTTTGTTTTATCTAGATATGAATGTATCAAGTCATGTGTTAGTATTTAGATAC
ATCCATTTCTAAACAAACGTAAGACAAAAATTTTAGGACGGAGGGAGTATTCTTTTCTTA
CTACGGGCGGACCTTATCTGTCTACTACTTTATTTCATAAAGAAGTTGTTAGGGTATATT
TCTATCCTAGTGGTTTTGATCATTTATGACAATGCAATTGTGCACTAATCGTATGCACTA
AGCCTTTCAGATATTTCATCATATAGCACAAGACAATTCATGCCCCTCGGTGTATTAAAA
TGAAGACGGTTTTCATTCTTACACTTCACTGTTGGTGGACTTGAGTCGTAGGAAAAGTCG
TAATATTAAGAGAGGGTCCGCACCGAAAAGGTTTGGATGGAACCATCATGTACACATTTT
ATCGCACTTGTGTTCCATTCCCACCACGATGGAGCCTCCAACCTTGCCCCTGTCGTGCCT
GAAAAGATCCAAGCGGTAGTACCGCTCCCTGGAGCAGTACTACCTCTTATCCGAGGTAAT
ACCACCCTAGTCAGCGGTGGTACCGCTCCAAGGCGGAAGTGCTCTGCCGAGTGTCGTTGG
CTAGTGCCGCTACCTCTGGATCTGGACACTTTTCGTGTCGTATTGAGCGGTTTCTGGAGT
GGTAGTTCTGTGCGGTAGTACCGCTTAGAGAGCGGTAGTACCGCTTAGCGAGCGATAGTA
CCGCTTATTACTATCGTGCCAGTTTGCCCATGTTTTCGTGGGTTGGACTCTCAGCGGATT
TAGGAGGCGGTACTACCCCTTATGGGCGATAGTACTGCTCGTGGCAGCGGTAGTACTGCC
CCGATATTACTACCTCCCTCTGCCTTCCTCCTAATCTGCTACTCCTCACCCACAGCGGTA
CTACCTCTAATGAGCGGTAGTATCGCTCTCCGAAGCGATAGTACCGCTCATGTGCGGGCT
GTGTGGGTGGGTAACGGTTGGAATTGTCCCCCCCATTATATAAAAGTGGTCTTATTCCCT
AAGAAGGTCACCTTTCCTAACCCTAAGCTCCATTATTGTTCCAAGCTCCATTTTCGCCCG
ATCTCTCTCCCTAACCAACAAAACTTGTTGATTCTCTAGGGTTTTCTTGAGGGCCTTGAT
CTACACATCCACCAAGAGAAATTTGATTCCCCTCGCTAATCCCTTGCGGATCTTCTTACT
CNNNNNNNTTTGAGCACCCTAGACGGTTAAGGTCTCCTCGAAGCCAAATTCCATT