Map Locations of contig_46689 (10428 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46689

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62551 1 1848 bp MLOC_62551.1 Available Available LOC_Os02g50350.1, FRAME:+2, EVALUE:0.0, 13102.m05713 protein dihydroorotate dihydrogenase protein, putative, expressed





CDS Structure of MLOC_62551






Contig Sequence (10428 bp)

>contig_46689 10428 assembly3_WGSMorex_rbca.fasta
TACAAGTATAGCATGAACAATAGACAATTANNNNNNNNNNNNNNNNATAATAATAACTAC
TTTATTATTACCTCTAGGTCATATTTCCAACACCACCACCGACCACCCACCTCCAACCAG
CCAAACACCACCCCAAACCTCAGGCAAACAACATCTCTTAAGAAAGGCGCCACCAAGGTG
GTAAACGACGGCAAGGACGTCGTCGCAATCCATCTGCTGGATCTAAGGCTTTCGCCTAGA
GAATGAACAGAGCACGCGTGGAAACGATGCCACACACAACGACACCTTCAGGTAGGGATC
CGACGCCAAAGAACGCCGTTGCCACCGGTATCGACCGAGGTCAACATAGGGCTTTCACCC
GTAGCATCACCCGCGCCATCCCATTTCTGAGCCACATCACTTTTGAGGCTGGAGCCACCG
CCGCCATCTAGTGGCCAGACCGGACTGGAGCAAGGGAAGATCCCTGCCATAGGCTAGACC
GCCGCCTAGCGGAGTCGCGAGGAACAAACCAGGCCGGTCAGAGACGGACGACCTCAACCA
GCATCCCGGCACCGCGTCCGAGGCACCCCGCCCAATTTGGATCAGGGCCTTCGATATGCA
CCCGCAGCACACCCCACCACCTCCATCCAAGCACCAGGAGGCAGGGCTACGACCTTCAGC
CCACCGCCACCAGCAGCTGTCGGTCCCGCTCCGCCCGCAGCCCACGACCGCCGACCGATG
CCAGACCTGGAACCCGACCAAGCACCAAGGGTGCCCAACCGAACCAGGCCGCAAGCGCCC
ATCCCCACGGCGTTCCTGCTCCGCCACAGCGCAGCCGTCGCAGCCTCGGGCACCTCCGCA
CACCGGCCGTCGCCGCCACACCCCGCGCCAAGCACAACGTCCCCTTTGCGGGACATGCCC
CGCGTCGTAACCAATAGTTAGAGGAGGAGAGAGATCCCCGCCGCCACCGACGCCAGCCGG
GCTTTGCCCGTTGATGCCTCCCGACGACGACGGAGTGGAGGGGCTGAGATGAGTGACCTG
GGGTGGGGTGGTGGCTAGGGTTCGTCCGGCCTCTCATGGAAGAGGCACGAGACAAACAAG
GGTAGGCAGAGTTTCAGAGTCACCAACACTTCCACTCAAAAAAAGTCACCAACACTTCAT
AGAACTAACCAAAAAAGCCTACGTATATAAAGATTAAAATATGCTCCCGGATGAACAGTA
TCATAAAAAAAGTGGTAAAATGTTTTTAAAATAACTATTTTTTTTATGGATGTTCGTGTT
AGTGTGACAAGCATGCTAGACAATTTTCGTACAAAACGGAGTACTATTGTCGATGAAAAT
AACAAATTTGGGATGACATTTCGGGGTAATATTTGATGTTTAAATTTGTTATTTTTGCAT
CGGCCAAAATATTTAGCCTTTTTTGCCTAAAAATGTTCAGGTAGCCTTAGAATGTGACTA
TAAATGCATACAATTGTTATTGGAATATTTCTGACATTTCAAAAAATATTTTTGACAAGC
AGAAGCAAATGCTTCCGGGAGTCAAATTGGATTTCCCACTAAAATATGTACGGTAGTTTG
GTTGCTGGATTAGTCGATTATCACGACACGTAACCCACAAGCCACAAGGGCTTTCCCCAT
CACGTAATCCCACACTTACTTTAGAAAACGTTATAAAGAGGTTCCTTTCTCCCTCATCCG
CGATACTCCCCACAGATTCACATCGCAAAACCAGAAGAAAAAAATAAATAGAAAGCAGCA
ATGGAGTCGCTGACTCTGCGCGCCTCGCCGTCGACCGCCTCGCCGCTGCTCCGGCTGCCG
GGCCGGAGGCGTGCGGCGTCCGTCCGCGTCTCCGCCTCCGCCTCCTCCGGCGCCGGCGAG
CCGGACCTCTCCGTGACCGTGAACGGGCTGAAGATGCCCAACCCGTTCGTGATCGGCTCA
GGCCCCCCCGGCACCAACTACACCGTCATGAAGCGCGCCTTCGACGAGGGCTGGGGCGGC
GTCATCGCCAAGACCGTAATCCCCCTCACCACCTCGCCGCTGCTCATTACTAGCTCCCAT
GAATCGTTATGCGGCTGCCATCTTCAGAGCTAATTTCGCTGCGCACACGGATAGGATAGG
ATCTGTGAGCTGTGGTTCAGGGGATTTTGCCTTAGATCACCTCGGATGCTTAGCGCCATT
GTGTCTTTGGCCGCGTGGTTCCGATTTGGGTCCGATATGGAGTGGGGGCCAGTTCAATCC
ACTGGAGAAGCAGTAGGAGTAGATCCTGACCTCATAAGCTGGGTGATGACCACCGGAAAC
CTTGTGCTCGGTCCACACTAGATTCATTGGTTGGGGAATGGGGATGGATCTTAATTATGG
TAGTGCCGGCGTGAGAACTATAAGACAGTATTATGGCTGATTAAAAAATGTTTGTTTGTT
GCGACCACATTAGACTGTTGTAGATCACATTTTTTGTACGGGCTAGGCCTGCTTTCTTAC
CTGACAAACCGCCTGTAAGGTGTTCTAACCTTTGCCGATGAACATTTCATTCCCACTACT
AATCATTAGAAGGAAGCTTTAACTCTCACCGGTCCCATTCTGTCACAATCATCACTTTCA
CATTACTGATACCACTCTGCATTGGACCCACACAGTCATCAGTGATCAGTTTCACCAATG
ACATTTAATGGTCTGTCTTTTCTCATGTAACATTATGGCTAACTGTTGGTTTAAATTATT
GGATGCTGGAAAAGTTAATTCTGCAGTGCGCGCGGATAGGATAGGATCTATGTGCTGCAG
TTCAGAGAATCGCGCTAGATCACCCCAGATGTGAAGTGCTTGCTTAACGCCATTGCGTTT
TGGCCGTATGATTCCGATTTGGGTTGGATATGGGGTGAAGGCAAGTTCAATCTACTAGAG
AAGCAGTAGATCCTAACTCCATAAGTTGATGCCAGACCAGGGGGGTGGTGACCACCAGAA
ACTGTGTGTTTGGTCCAACATTAGATTCATTGGGTTGGGGATGGATCTTAATTATGTAGT
CCTGGAATGTGAATTAAGACAGTAATATGGCTGGTTAATTTTTTTTGCTGCAGATCATAG
GAGAATTTGTTTGTTGCGACCAAATTAGTCATTAGACTCATGTAGATCACATTTTTGTAT
GGATTAGGCTCTGCTTTTTATTTTTCCTGACAAACCACTTGTTTGAAACCATGTCCATCT
GCTTTTGGAGTAAGGAGTCCCAACTTTTTTCCGATGAACATTTATTCCCAGTACTAAACA
TTAGAAAGAAGCTTTAACTAGTCACTGGTCCCATTCTACATTAGACGGTCACAGTCATCA
CTTCCACATTGCTGATACCACTCTGCATTGAACTTACTCAGTCATCAGTTCAACCAATGG
CATGCAATGGTCTCTCTTTTTTATCGTAACATTATGGCTAATGTTGGTTAAATTTATGAC
TGGTAGGTGTCCTTGGATGCTGGAAAAGTTATCAATGTAACTCCTCGCTATGCTCGGCTC
AGGGCGGATCCTAATGGATCTACCAAGAGTCCTATCATTGGATGGCAAAACATTGAACTT
ATCAGTGATCGACCTCTCGAGACAATGCTTAACGAGTTCAAGCAACTGAAGAAGGAATAC
CCTGATAGGATACTCATTGGCTCAATAATGGAGGAATACAACAAAGCTGCATGGCATGAG
CTTATTGAACGTGTTGAGGAATCCGGAGTGGTAACAAACATTTTCATATCTGTGTTTTGG
TGCATACTTTTTCAGAGTTATGATAATGAAGTACTACTGATTTGTTTTATTTTATCATTC
AATAGGACGCTCTTGAGATAAATTTCTCATGCCCACATGGCATGCCTGAGCGAAAAATGG
GTGCCGCTGTTGGACAGGATTGTGCCTTGTTAGAGGAGGTTTCTGGTTGGATAAATGAGA
AGGCCACTGTGCCTGTTTGGTCTAAGATGACTCCTAACATTACAGATATTACACAGGTTA
CTTCCGCATATAATACATCTATCGAGTACTTAGCGGTCACATATCTACCGTGGTTTACTT
GTTATGGTTTAACAAATGATGAGTCCTAAAGTAGATTCTATTCTATCCTTGCCTACTTTT
CACGTATTTAGTTTGTACCTTCCAAGAAAAACATACTTAGTTTGCTCTCTGCATTGATCT
TAGTAGTTTGGTTCTCAGGTCGTACATTCGTTGATCTGCTCGCAGAAGCTAGCTGTTAGA
AAATAGTAATGAAACTATTCGTGTAAGATAGTTTTTGTCTTGTTCTACATATCTCGGATG
TTTGGTAACAACTGGGAAAGGGTGGGAGATTTTGCTGGATCAGGGATATGAATTGTGGTT
TTAGTCTCAGGTCCACGTTTAGCAAGACTGACAGAAATTGTGAGTGTCTGATTTGTATCT
TCAAAGATACTGTAGGATGGGTCATCATGAAATGTTGAGGTAAATCAAACTTTCTAAAAT
GTTGGGAGTTCGACCCTCAAACTCCTAATCCTCATTCCATTTAAATTCTCATACCCCCCC
CCCCCCTCCCCTCTGAATTACCATTCCCTGCAACCAGACACACCCATGGGTTTCCAATTT
TCTGTTCTGTTCATTTTGCATTGTCAACATCAGATATGTAGTGCATAATTGATGATAATC
TTTCACAGAGTCCAACATTGCTGCAAAGTCTAGCATCTTAACTTGTACTGATCACTGAAA
CATCAATTGTACGTTGGCATCGGATAGATGACATTATTGCCATCACTTGTGCTGCACATG
ACTCTCCATGATACTTCTTTTTGTACATTAGCGCTAAGAATATTTGCTAATTTCGCCCAT
ATTTATTTGTTCATGTTTTTTTTTTGTCTTAACACCATGCAGCCTTCAAGGATTGCTCTT
AAGTCAGGGTCTGAAGGAATTGCCGCTATCAACACAATTATGAGTGTGATGGGAATTGAT
CTCAAAACTTTGCGCCCAGAACCTTGTGTGGAGGGGTTAGATTCAGTTCCCTGGGTTGTT
TTTTGGAGCATGTCCATTTATCGCTAGCAATTTGAAATAACACTCTGTTGTACAGGTACT
CTACACCTGGGGGATATTCTGCGAGAGCTGTGCACCCTATAGCACTTGCGAAAGTCATGC
AGATAGCAAGACTGATCAAAGAGGAATTTCCTGAAGGTCGGTCTCTCTCCGCCATTGGCG
GTGTTGAAACCGGCAATGATGCTGCTGAGTTTATTCTACTTGGCGCAGATACCGTACAGG
TGAGCTCTTGGACTTAGTACGCAACATATATTCCAATCAAGGGGGGCTGATGTGGCTCTA
TGCTGTGTGCATCCTTATGTGAACTGCCAGTGCATATTTTTTAGACGTGCTGGTACACGT
GTCATGCTTAATTATACTGTAGGTAGTACTTCTGAGACATCATTTTCGATCGAGTCACTA
ATGAAGTAATGATTATTCATCACAGGTATGTACAGGTGTAATGATGCATGGTTATGGCCT
TGTGAAGAAGCTCTGTACAGAGTTGCAGGATTTTATGAGAATGCACGACTTTTCATCAAT
TGAAGATTTCCGAGGGTATGCCCCCTTCACCTTTTTTTCTTTGTGGTTGAATTGGTGTTG
GAAACCATCTGGACGAACTACCTTTCTTTTCGGTACATATCAGGATATCATGTACCTGAC
TGTTGTGCTACCTCTAAACGTTCACTTCTTTGCGCTAAGCTTGTAAGCACCATTTTGTTA
CTGAAATCGAACAGATGAGCTTTGAAATGTAGTAAATCATCACCGACATGGGAGCCCAGG
AAGTTCCAATTGCTATATTTTTCTGTTCCTCATGTTACCAAATACAAGGCAGGATTACCG
AAGGTGCATGCCCCTTGTTAAAACTGGAAAAGAATCACTTAAAAAAAGCTGGAAAATAAA
ATCCCTTGTTAAAACTGGAGAAGAACAACTTTCCATGAAAAACGGGAAAGTAAAAGGTTT
TGGGTAAATGGGGTGAAAGTAAAGATAATCATCAAGAGGGAAGACTTGGGAAGTGCGGGC
AATAATCATGGTTAGCTATTGCCTTCAACCTTAATCATGCCTCCTATAGCCTGATTAGCA
CGCCTAGCCCCACCATGTATGAACGGCACTAGTCGAAAGCCTTGTGCACCGTGCAATGAT
CATAACTCCCTGTCAAGTTGGCCTTGTTTTACTCTGTCTCGAAGAGGTTTCTCTGAAGCA
TCATCAGTAGTACTAGTTGAGTGCTAAATGTGTACGTACATATTTTCTGCCCCGCTCCTG
TGACGACGTGGTCGATTTATTTTTTCTCGCCTTCTGGAACAAGATCGCTGACACTTCGTC
ATCGCAGGGCGTCTCTCCCCTACTTCACGACGCACACGGACCTGGTGCAGCGGCAGAAGG
AGGCGATCAAGCAGCGCAAGGCCATCAGGATGGGCCTGCAGTCGGACAAGGACTGGACCG
GCGACGGGTTCGTCAAGGAGACGGAGAGCATGGTCTCCAACTGAATGCCGCAGCCCTGTC
TCCGATCCGATCCCCCTCGCGGCGCCCTTCCTTTCCGCCATACTTCCTTCCACTTGTGAT
TACGCCCGGACCTTAGAAACGAACAGTGGGAACCTTTGCTGCACCTCATTCAATAAATCA
TGATGATAGTACGAAATTCCTTTTTTTCCTTCTCACCGTGTCGTTCAAGGAGGGGCGACG
AGCGAGCCAGTGCGACGACGGTCCCGGTCTGGCCCTGGACCTGGACCGAGTCATGAGTTC
ACTCACTAGTCGGCAGTTGATAATTATCTTCTCCTTTGCGACCGCCGGTCTCCTCCAGAC
ACATTATGTTCTTTCATTGTTCTGACCCTTTTGACATAGGATCTGATCCCGTTTGTAAAA
AAAATAAAAAAAATCATACCCTTCTCCTACCGTCATCTGTATGCATATACACCCTACCGT
CATTTTCTTTTTATTTAAAACGGAGACAAAAGCTTTGCCTCATCTTATTAATTACCAAAA
AGAGAATTGTTCGATTGATTGACGGAAAACCGAACGAAAATCGTTATAACACAATGGACC
TTGTTGATATGGATAAGTGGCGTAGGATGTGGTTTTCTACCGTCATAACATGTGGCGGTA
GGGTGTTCAGACAGTTAATTTTCTTGTGATGGAATTATCTGTCTGAACACCCCACCGCCA
CTCCCTGTGACGATAGTAGCCACATCAACGGGTCAAACCGCGTTGTATATGTTGATTAGA
ACCTTATTTCCACAGCGAATGGTGATCGGATGTGTATGCCTACCATTACAATAGATGATG
ATAGAAAAAAGAGATAGATCGGACTAAACTATGCTAAAAGGGTTAAAACAGGAAAATCGT
CCTCCGTGTCATGTGAACGTGATCGGCGGCGGGGATACCCCGGACTTGACCTGGTGGTGA
CTTGAAGTCCAGCGCGGGCGCGGGGTCTCTGGAGTGAAGCGTGAGGAAATGATGGCATCA
GCCCCGGTCGGGTTCAGGTGTGCGGGGTTCTTGGCCGAATCTCTCTTCCACACCTGCTGC
CGTTTGGTGCAGCGTGTTACCGGCTTTGTCGCGTTCATGGTACTTCCTCTCTCCCTCCTG
AATCTTTGATGCAGTTTCGACTGACGCCACGTACAGTACAGCCACACGTATTCTGTCGAG
AGCGACTTCGGCTTATCGGCGAGAAGACGTGATTGCGAGTCCCGAAAAGGCTGCTTCACA
CCCGAGACAGGGACGGGGATGCACGGGGCATCCTCACGGTGAATCCGCAAACCTCCTATG
ACTAATGCGATTCTGTATCGGTCTGTGCCGTTGTTCGGATATGACTTCTTTAGCAAATCA
AAGATAAATGAAAGAAGGATATGATTTCTTTAGCAAATCAAATATGATTTCTTTAGCAAA
TCAAAGATAAATAAAAGAAAGATTTACGAAAGTCCCGACACGAGAAACATCGCTACCTAT
CCCATGGCCCTTCCAAAAGGAAGGCGAAGCCAGCACTTTTGTAGCATGAAGCATTGCTTC
CGCGTCGAAACCCCTCACCTCTTTTCTTTCATTCCCCATCGTTCTTCGTCCACATTTCGT
TCTTTTCTTTTCTCCCACCCTCTCCTTCCTTCCGCCGCATACGCATGGAGCCGTTAGAGA
ACCTGTCGAAGATGGAGCCGATGAAGGTGTCAGGGGATCCGTGCATCGCACTCGCTCGAA
AGATCAACTCTGCGACGCGACAAGATCATCGCGGCAAAGCGAAGGCCGCAAAGGAGAAGA
AGCTCAAGAAGCGGTTGACCACCGGTGGGCCTCCTGGTGGCGATGGCCCGGGAGGTCATG
GCGGTTGGTGCGGCCGTGGTGAACGCCGCAAGACAGACGGGCGCACATCACAGATGGTGT
CATGGCCGGAGCCTTACAAGCATCCGTACTACTACATTGCCAAGTAGCTCGGCACCCCCA
TCCAGTATTGTGTCTTACATCATCGACGTCGGCACGACGTCGCTCTTCTTTGAGTATTCT
TCACCGCAGCTCGTCCGGGCATGGTCTGCGGTTGAGGAGCGGATGGGTGCCCTCATGCTG
TTTGTTCCAATGCCTAGAGCGAGGGAGCAGGCGTACGACGTGGACAGGAAGATGCTCGAC
ATCATTGACGACGGAGGTGAGGGAGGGGGAGGGGGCAGGTGGAAGACTCGGATCCCACCG
AGTCCAGCAACTACCAGCAGCAGTCCTACACCCAAACGGCTACGCAGCAGGCGTACACCC
AGACTGACGATGGCACAAAGAAACAACAACATTGGGCCGCCGGAGAACACCAACCTGACG
GGGAGGAGAAGGAGTAGGAGGGTGACGACGACGATCCAGATGATATAGTCGGTAATCCGA
AGAAGGGAAGAGAAGAAAGTTTCAACATGCGGGAGGACGAGCTGTTGTTCGATGCATGGT
TCGCCACTAGCCTCGATCCGTTCCTTGGCATGAAGCAAAAAGACATAACATTTTGGAGGA
ACATTCACATATGGTTCCATAAACACAAGCATTTCGTGTCCTACTCCGACGCGGTCATCC
GCAACCGTGAATGGAAGCCCCTGAACCATCGATGGTACACTACCCAAGAGGCCGCGTTGA
AGTATTGCGGGCACTTGAAGCATCTCATCGCACGGTGACCTAGCAGTGAAGAAATCACGG
GATAAGTAAGTTGATCGGTAGTCGGATATGTTTTAGTTTTTTTTATCACCAATCCCATGA
TCCGAACACTATCCCACATTATGTGGGTTTTTGCTCAATAAAGTTTTGTTTCACCCCTCA
AAAAAAAAAAAAAAACAATCACACCGAAGCTTGCCTAAAGAAAACAATTACACTGAAGCT
GTTGTTTTGCGTAATGAGCTCCCAACAGTCCACCGCCAGTCCCGGTCAACCTTTACCCCC
GTCTTGAACCTTGAAACCCCAACAGAAAAAACCTTGTTAGTTCCAACTAGCACTGTGGTG
GTGTACACACAAGTCGTCATTCCATTTCTCTTTCCACATATACAGCAACAGCTTCCGACT
CTTGGTTCAAAACCTAGAAACCCCAAGTAAAATAAGCCGGAGAATCATTCTCATTTGATT
GGAGAGAGAAAGCGACATATCCTAGTTTCGTTCACACCAAGACCAGCCGAACCTGGACAT
CTACGATCAAACACCTCAAACCCGTCTCAAATGTCCGATCAATCAGTTCAATCACCGAAC
TGTCATAAAAAATCGATTCTGACGAATTCCGCATATTTATCTCAAACGTCCGGATTGACC
GACATCTCTCATATCCATCTCAAGTATGAGAACGATATGAGGGTCCGCAGACGCGTCCGG
ACACGTCTCGTAAATCCGTCACATAAGACGCGACCTTACACTGGACCACTTTTTTTTTCT
TTCTTCATTCTTTTTTTCTGTTTTTTCTTTTTCATCAATCACGTGCAAATGACCGGACAT
GTGAAAGAAAAAATATGAAAGATGCGACTATACAGATAAAGAAAAGGTAGGAGTTTAAAA
CAAACACGTCCGGGCACTAACCGGTCATGTCTGCGGACACGTCCGGTCACTAACTGGTCA
TATCTGTGGACATTTGAGAGACCGGATTTGTAAGAGCAACTCCAACGGAGCGATCCATTT
TGTCCGCTGCCGTCCGTTTGAGGCAGCGCGGACAAAAGTGATGGTCCAGCGCGCCGACCA
ATTTCCAAAACGCGTCCGCGCCGATCCGTTTCTGACCCAAATTTGGGATTGAAATGCATC
GACGCGGACGCAAAGCGGATGCGCGCGCCCTCTCGGTGTCCGTCCCAACCATCACGGTCA
ACATAGTTTATGACGGCCACCCTCCTCGGGCCTTTTTAAATCCGAGCGTGCGGAGGGGGT
TCGGCCTCGTCTGCTTTCAGACCCCGTACTTATCTCGCCACCCTTCTGTTTCCTCGTCGG
CGACCCTAGCCAGCAGCCATGACCAACAACGGCAACACCCCCGTCGTC