Contig Data
morexGenes
Links



Map Locations of contig_46653 (5989 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46653

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62516 1 1829 bp MLOC_62516.1 Available Available LOC_Os07g43580.1, FRAME:-3, EVALUE:9e-103, 13107.m04579 protein MYB family transcription factor, putative, expressed





CDS Structure of MLOC_62516






Contig Sequence (5989 bp)

>contig_46653 5989 assembly3_WGSMorex_rbca.fasta
AAACATCCACCGGTGGATGCGTAGCATGCCCCTTTTACCTTCAAGACAGATAGATGACAA
CTTAAGAGCTGAGAAGATTAATCAGCTTCGAAAAAATAACGATACGACATGTGCTAGGAG
TAGTATTTGGCATATACTGGCCAATTTGTGATTGCAAATACTAATTTACATGCTGACCAT
GAAAGAGCTCCAAAGTTTAATCAGCTTCCTAACTTAATTGGTGACAGATATATATGACAG
GTAGTACCAGAATGTCACTTACTGGTTAATACGGAGTAATCGATAGAAGGCATGCCATGT
ACAGTACTAATTGACATACTGACTTTATTCGCCACACTTTGCAGCTTGCAAACACGGGTC
TACTCAAAGTACAAAACCCAAAACCCATGAACATAGTACCAAGTCACAGTTACAACAGTA
AATAACAGGAGCACCACCACCACAACCTCCCTTCTTTTCCCTAAATAAAAACTATGCAGA
TCCTAAGTAAACAAGGTACTACTAGAGGATCTATGTAGTTTTCGTTAGGTGGGCATGCAG
TGAACACACTCCTCACATCAGTAACGCAGCAGCTAGGAGCTCGTCGACCTTAATTAACTT
GGCACGATGGAGCTAGCTAGAATGGGTAGTCCATGGCAGGGAGCATGCCGGGGACGCCAA
GCAAACCGCCGCCTGCGTGGCCATGGTGGTCGTTGTTGCTGTTGTCGTCGGCGAACAGCC
ACGTCTCGATCGCGTTCAGCTGCGTCTGATCCGGCGCCAGAACGGCCGGCTTCCTCTCGT
ACCCGAACGCGGACCCCAGCGCACGGGCGGCCGCGCCGCTGCCGTATGAAACCTCGGACG
CCGACGAGCCGGAGGGGCTGTCGGCCGCGGCAACGGCGGCGCGACCCTTGCTGGTGCTGG
TCCAGCCGTCGAGCATCCGCGAGATGTTTGCGGTGGTCAGGACGTACGGGCCAGCCGCGG
AGGGCGAGCAGTGGGACAGCGACGCGGCGGAAGAGCTCGAGGCCGCCGGGCTGCCGCTGT
CGGCGCCGGCCGCGGCAGGCCCATTGACGCCGTCGGCCGCGTCGGGCTGCTGCGGCTTGA
TGTCGTCGAGCGTGGTGAGCGCCTCGCGCAGCGCGCGGCGGGCCATGTTGATGTCCGTCT
GCAGCCGCCTCTCCCACTGGCCCTTGGAGGAGGAGGCGGGCCTCTGCGCCGCCGGCTTGG
CCGCCGCCGCGTCGCCCCCGGCCTGCAGCTTGCGCTTGAGGTGCGTGTTCCAGTAGTTCT
TGATGTCGTTGTCCGTGCGCTCGGGGAGGTAGGAGGCGATCGCGGCCCACCTGTTGCCGA
GCAGCGCCTGGAGGTGGACGATGAGCTTCTCCTCCTGGTCGGTGAAGTTGCCGCGCTTGA
TCCCCGGGCGCAGGTAGTTGGTCCACCGGAGCCGGCAGCTCTTGCTGCACCGCATCAGGC
CTGCGCATCATCCATCGAGGGACATGATTCAGCCCACAAACGTCCATCCATCCGACGATC
CATACCAAACCAAACCAAACGAAACGAAGGCATGCAAGGACCGGCGAGCAGAAGAAGAAG
AAGGAGGAGGAGGGCGGATGCGTGGATTACCGGTGCGGGTGGGGACGGCGCGCCAGTTGC
CGGGGCCGTGCTCCTGGACGTAGGAGACGAGCACGAGGTCCTCCTCCGGCGTCCAGGGGC
CCTTCTTGACGCCCTCCTTGTCGCAGCACGGCGGCCTCCCCATGCTCTCGACTCGCCCGC
TTGCTACGGCCTCGGCCACGCCGAGCGGGATGGGAGAAAGATCGCCTTTTGCTGCAGGCG
CGGGGCGGACGGGGACAAGGGGTCGAGCCACCGGCGCCGTATACGAGCAGGATCGCGTGA
CGCGGGCTACTGCTACGCTACAAAGGGAGTGAGGTGAGAGGAGGAGACTGAGGTGGAGAC
GAAGCCCGTGGTAGTGTGGTGTGTGTGCGGTGTGCTGCGGGTTGAGGGAGGGAGGGAGGT
GAGGACAAGGCGGCTCGGTGCAGGGTCCAGAGCAGGAGTAAGGGTGTAGGTGCATATATA
TACACGGTTACGCGCGGTGGTCACGCAAAGCAAAGCAAAGCACAGCGCTGACCTTGCGAT
TACTTGGCCGGTTTAGCTCCCTGCCGCTTTACCACGGCCAGGTTACCGAGGCAGCTAGCG
AGTAGCCTGGCTAGTAGTGTGCTGGCCTGCCTGTGACTCCATGCTTGAGGAGGAGTCAAA
ATGTAGAGAGAGGAGAGGTGCGTGCGGAGGGAGGGAGGGAGGGAGGGAGGGAACGGGGGC
AGGGCTAGTGAGTTGAGGAGTGTGCATTTACTCCGGTCTCGTGGCAAAGTCAGCCTGGTG
GTGGGGCGGTACACTGCAGCTGCTGCGACACTGTGCATGCCGCCTTGCGATGGATGCCGC
GTGCATTTATCGCCCGCTGTGCGTGGTGGCACCATATGCCTTTGTTTGCGACCCGCATGC
ATGGCCCCCCCGCGCCCGTTTACCTCCGGCCGCCGTCTCCCATACGGAAACGGAAACGAA
GAAGAAGATAACCGGAAATAGTTACTACCGCAGCCCGCAGGGGTTATGGTTTAGTGCCAA
GCCGAAGCCATGGCCAAAGTCCAACTCGGCGTGTGCGCTGCTGCTAAGTGCTAAGCGTAT
TTGTCGCAACGCAGAGCGCCGCTGGCTCCCTCACCTCATCACTCGCGTCCTTTGACTCCT
TTTGGGCCTCTGAGCTGACATCTCGAGTTCGACCGCTTTTCCAAACGGACAAACGGCTTT
GGCGTCTCGTCCAGCCACCATCGCCCTTGCGTCACGCACAGTGCCGCAGGAATCCCGGCC
TGCACTCTCCCCTCCGGCCCGTCGGCCCGAGTTCATCCAGATCGCAGCCAGGGTATTGCT
TTGACCGCCCACAACGCCCGGTCAGCGCCATGCGCATGCACAGCACACGCACACGCTGAT
AAAAACACGTCGGTAAAACTTCTCCGGAAGCATTGAAGGTGGGCTTTCGCGGCAGCGTTT
GTGAATGAATCGTGATCGATCGGCCGTCACCTTTGTGCATGCGGCGCAGGGGAGGCATGA
GTAAAGCGGGGCAGCAGTGGGAGTGGAGTAATGGCCGGGCCGGCTCGTGTGCGCCTTGGT
ACTTTAAGCTGCGCCATTGGTACCCGCACACATGCATGCATGCATCGAAAGTTAATGTGG
ACGAAGGTGCACTGTGCATCGTGCACCAACCAGGCAAGCTCACCAGCTCAGACCCGTAGT
AACGCATGAGGAAGGACGCCCGGCCGGCCGATCGGCCCATGATCGACGGCCTGGATGCGT
GCAAGTGTATTCATGACTTTGTGTACTCGGTACGTATAGGGTTGTAGTAGTAGCTGGTGT
AGACGAAGCAGCAGCGGCAGCAGCACATGCGTCGCCTAGCTGCGTGTCGACGAGGTCAAC
GAACATGAGTGAAGGCATGGACAAAAAAGTCAACACGATTGTCTACTGACACAAGTACGT
GGTACAAGACCTCGCTTTGGTATACGCGTGTAGGAGTAGCCTACCCTCTGCGGTTGTCGT
CCCTTAACCAAGACGTGATTATCTGTGTACCATCGGGAATTTTATTTGCCGGTTGCTTGC
AGGTGTAGGAGTACATCACTCTGAACCCAGTCTAACAAGTGTATAAATCAAATTATCACA
GCTTCCAAATCCCATGCATCCAGTATACTACCGAGCATCAATGGTAGTAGTAGTAATTTT
TTTTTTCTAACAGTAAAATGGGATGTCCCGGGAATTGATGTACAAGCCTGTTTCCTAGAT
CACTTTAGCTATATGTCACTCGACAGAAATTTGAATTTGGGTCAGTTTTTCTGGTCGTTG
ATTTTGGCTTTGATTTTCATGCTCGTTTTTTTTTCTACTATGTGTTCAAGCTTGCAGTTT
TTGACTTACTCTCTTTTTTTTTTAGGGAAGACTTACCCTATTTTGTAGTCAGTCAATTTT
GGTAATGGGCTTGTAGCCGTCACTGTTTGCTTTTTTGTCTATGCTTTGCATACATCCATA
CTTGTGCATGTAGGATCTAACTATTTTAGGTTTGGGCAAATAAAATCCTAAATGAGGTAA
GCACTATAGAAGTTGTTTTTTTGTTTTTAGAAGTTGTTTTTTAGGAGTTGTTTTTTGTTT
TTATTTGATTTCATTTCTTCTGTAAGGTTAATAACAATTCTAGTAATTTATTCCTTCTTA
TAATGTTTTTTGTTTTTGCAAAAACTGCACTATTATATGTTATACTTGCATATTATAAAA
ATGTGTTCTTTCAATGTATATTTTCTACACTTTTGACATATTTTTTAAATTGTATGCATT
TCCCTGTTTTTGAGGTTAATACTCATGTCACTAATTAATTCTTTCTTACAAAATGTATAC
ACATAAGTACTATACAATATGTGTGTAAATTATACGTTCCCATATTACAAAAGGTGCAAT
TTTAGTGCAAGGTTGCGTCACTAGTTCATTTTTTTAGAAAAGGTATTCATTTTCTTTCTA
CTTAAATGGTAACATCAATGCCACTAGTTCATTATTTATTATAAAGTTTCATTATTTTGA
TTTTCTAGCTTCTATTTCATTTTCTTTCTTCTTTAATGGTAACACCAATGATACTAATTC
ATTCTTCATTATAATAATTTTTAATTTTTATTTTAGTTTTTATTTCATTTTCTTTCTCCT
TAAAGGGTAATACCAATACCACATATTCATTCTTCCTTCTAAAACTTTATTTTTGAGCTG
TTATTTTATTTTCTTTATTCTTTATGGGCAATAGCAATGCTACTAATTCTTTCCTTCTTT
GAACACTTATTTTTGCGGGACATTCACTATTATATGTTTGTTCTTGCATATTAAAAAACA
TTTTCCACATAAATTGTTTGCAAATTTTGATGTTACTTGATTTAGTTTTTATTTACAAAA
GTTTGTGTGTAAAGGCACAATTAAAACCATGGAGGTAAAAAATTGTGGTGATCACCAATA
CTCTATTTATCTCAACATGCACACATGTCATATCACCTCTACATGCATGGGAAAAGGTAT
TTCAATAGTTGATCCCCGCCACTTCTATTTATCTTAACATGCACACATGCCATTCATCAA
AGGCTCACCATAACATGCATGGCAAAGTAAATAAATATATTATGCTACTTATATTAAATA
ACTATTTTAAACAATAAAAATAATCAAATGCCATATATATAATACTCCCGTTGCCCAAAA
TAAGTGACTCAATTTTGTATTAATTTTAGTACGAAATTAGTATAAAGTTGAGTAACATAA
TTTGGGACAGAGGGAGTATGTACTTTCAATTTAATTCATATATTATAAATCTAAATATCT
GTGTTCATTCATGTTTTATACAAGCAAAACTCATTAAAACATATTGCAACTAATTCCCGT
AGCAACTCTGAGGGTATCATCTAGTTCTAGAATACTTAGGAAATAGGGGGAATTGTGTGG
CTGGGAGAAAGTTGTGTATCACTCTAAAGATGATCGCTGCAATATCTCTGTAGGTGTAGC
ACTTTAGATAAAACGCTCCAGACTGTGGTGACGTTTTTGACCAATAGACAGGAGATCGGT
AGCATTATACCTGGGTAGGACTATGTAGGAATTACCATATGCAGATACGCAAATGGTGGC
ATGAGATCATCGGCTGGTAGCAGGCTTGACGGAAATGAGCTTGGACCCAAAAATTGTTTC
CTAGTTGATTGACTCGTAGCTGCTCCTTTCTAAACTTATCTAATATTCGTTTACTCCCTT
TAAATTTATTTACTCCCCATATTAGCTTTGTCCCAAGTCAATTTGTATAAACTTGGACCA
CACTCATGTTTGATTAGAATTGACTGTTTTGATTCATATCCGACCGGGTAATAAAATGAA
TGTGATGCACCTTGGCTTAAACATGGACTGTTTGATTCGAACTGCCTTTTAGTTCTCACA
CATACATGATTGTACGTATAGCAATATTCGTACCATATTTTTCATTANA