morexGenes - Barley RNA-seq Database

Contig contig_46612
Source Contig contig_46612
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46612 (7733 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_46612

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62491	2	2139 bp	AK366083	Available	Available	None
MLOC_62490	1	481 bp	None	Available	Available	None
CDS Structure of MLOC_62491

CDS Structure of MLOC_62490

Contig Sequence (7733 bp)

>contig_46612 7733 assembly3_WGSMorex_rbca.fasta
ATTTTCATATTATATAATTTTAATATAGTAGATATTCATATTTTTTGATATAAATTTGGT
CAAACTTTATGTTGTTTGACTTTGACCAAATTTTAATCGCGGAGTAAAAAGAAACGGAGA
GAGTACATTCGTTTCTACGAACCCTCGTATCCTTTCTGTTGGGTCAATTTTTTTCTTGTC
TCTCCTGTTCAGTTACTGATCGGACGCGTCCGCAGACGTATGAGAGATCGTTTGAGGTGT
CCAGCTGTAGATGTTATGATTAGTCAGAGCTGTTGAATCCATCAAATTGGATGGGTAGCA
TTTTTTGGCATACTCCCTTCTCCAACCATAGTATTGAAACATTCAGTTGGACAAACCAAA
AGCTGTGCCATGATTGTTGGAGACTTTCATCCCTGCATCTGCATGATTCCAGAAAAGAAG
GAGCAGCAAAGTTTTTGGTCACATGGAAAGTGCCCAAGCCACACCGAGTGGACGGACACG
GACGGTCTAGGAGCTTCATTCAGGGTAGTTGCCAACGAACTTTTGAACGATAAGTCGAGA
ACTGCTAGTGCCACCCTGATGTGCCGGCCGGGAAAACGCACCAACGACATGGTGGCAGGC
AGGCATGGCCAACACTTGGCCAGCAGGCGGAAGGCAAGATACATATCACCAATTCGCCAT
TGAGCGTTCAACATCCATGTTGCGAGGCGTGTCACTGTGCTATAAGAGTGTTGACGTGTC
GTGGTAACGTCAATGGTTTCACGACCCGCGGTGCCGTATGTGTCACAGAGCATCGATGTT
GCGAGGTGTGTCACGATGCTGAAAGAGTGTCGACTTGTTGTGGAAGCATCGACGCTTCTG
CGACGCGCATCGTCGTAGAACATCGATGTTGCGAGGCGTGTCACCGTGCTATGAGAGTGT
CGATGTGTCGTGGGAACGTCAATAGTTCCGTGACATGCGGCGCCGTATGTGTCATAGGAG
CATCGATGTTGCGAGGCGTGTTGCCATGCTATGAGAATGTCGACGTGTCTTGGGAGCATC
GATGGTTCTGCGACGCGCATCGTCGTACGTGTCCATCGATGTTGCGAGACGTGTGACCAT
GCTATGAGAGTGTCGGCGTGTCGTCGGAGCGTCGATGGTTGTGCGACACGGATTGCCGTG
ATGCGGGAGAGCGTTGTCGTGGTGCGAGAGTGCTACAGCTAAGCATCATGAGCCATGCCA
TGTAGTGGGCATGGTCAGTGCCACAAGTAGGTGTTGCGGTAGTGTCACCGATGTTGCGAG
CCATGCCAGATGCTCGATGCTACAAATCTTGGCGTCAATGTTCTTTTTGTTGAAAAGATA
GACCGTCGTGTTATAAAATCTCAGGAAGCAAGGTTGGCCTATGTTGCGGCGACGCAAGCC
TTGTTGTTGTCGTTGTTTTCTCCTATGACAAAAGTCTAGCCGTTGTGCTGCAAAACTACC
GGATGCCGCAAGACGGTTGGTGCTGCCACAAGCCGAGCGCTCGACACGGCAAGTCGGATG
CTGTCATTTCTTTTCCAGGCCAACCAATGTTAATGGAAGCTATGCTACAAGGTCCACCAT
TGTTGTTGCTTGTTGCTGTTTTTTCCCGCTGCAAAATTTTGTAAGCCAGATAGCAGTGTG
GCAGTGATTCTACAAAAAAAAAAAAAAGTACAAGAAAGCTACAGAGACAGCAGGTACCCT
TGCGCACCCGGCCGTGGAGGGTATATAGAAACGATAGCTGCCAAACGTCAGATCTTGTCG
CATCGCACGGTGGGTGACCCGGCTGATTCGCTCGTAAAATCAGCCGGATGACGCCTAGTG
CTACCCTTATTTGTCAGTATCTTCGGGATTTACATGTTTTTCACACAAGCACCAGTGGTC
TAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCAT
TTTTTTTTGAACTTTTCTCTTAACTGTGCTCTGCTCCTCTTCATTTTTAGCAGCTTCCTC
TCTTTCTTCAGCAAATCATCTCTCACACTTCAAAAAACGAGATGCTCGTACACAAAATTC
TCTTTTACTCATGCACAAATGCCGCGGCATTCGACGATAAATACCTCAGAAACTTTGGTA
GCTCAAAGGGCAGTCTCATTTACTTATTCCAGAGAAATACAAAGGAGAAGAACACTCGAG
GGAACAGCTACTGGTTACTACACTAGAGCAAACATCGCCAGCCAAGCTGGCCTTCTGAAC
GTGTCTATCTACAGCCTGATCAAATACTATAGGCCTCACAGGACTTACAGCAGCACATGA
ACGGGAGGGAGATTTACCGCTATATATAGCTTACAATTGATTGTGTTACATTTCAGTTCC
ACGCGATAGTCGTCGCGTTTGATAACTTCTACGTTCTATACTGAATGCGCTGATATGCTT
TATAAAGTTCCTCCTCGGAGGACGACGACATGGCTTGCGTTACGCACTCTTCATTTCTGA
AAATAAAAATCACATGTTCAATGTTGAGAAGCACAGTACAAAACATATCTACATGAATGG
CGGTTGCTGAGTTTGCTGTGACATACCCATCCATTATTGTTGTCCAGATGAAGGAAGCCG
CCATGGCCTCGGGCATTCTTGAACTTGTAGACTGGTCCAGAAGCTGATAATACAAGTCAG
TGTAAGTAAACAAGTACAGGTCAGAGAGCAGAGATAACAATCTGATTTTATTGATTTATT
ATTCTGAAGATCCATAGCATAGCTTGCGAAGGAGAGAACAATAGATTTTGCAACATGAAC
AGAGCAGTATTTTGGTACCGATAAACAATTGACAGGTAACGGCATATTTTTTCACAATAT
GGACTGGTTTTCGAAAACGAAATCTTGGATAGAAACATCTGTGGCATTACACGAAAACAA
ACTGAAATTATAACTGTAGTATATATGAATAAAGTAACACATTTACAAAAGGAAATTGCA
GATGTGCAGGATTTTCTCTAAGAATACCTTCATAGCCACCGTACACTGGATCTTCAGACA
ATAAAAGTGGTGTGTCCAGGTCAATAAAACTGCAACCACAAAAGAAAAAGGACCATTTAA
GCACCTGATCTGACAGACATAAGGTTAAAACTTCATGCCTTCATTTCTAGTTTGAACTTC
CTAGTGATATTGCCTTTAGTTGTACAAAAATCCATACTTTTCACAAGTAATCTTTTCTCA
TTGCGGGGAATTTTCACAATTAACCAACCTGAAACAACCAAGCCCAGCGGCGAGATGGCC
AGCAAAGCCCATGGCAATCCTGGTCTCGACCATACCACCAATCATAAGTGCAATACCAGC
TTTTCTTGCGGCATCAATTACTTCGAGGCCTCCCAGAACCCCTAACTTTGCCAGTTTGAT
GTTAATAACATGAGCAAGATTTCCATGTATTATTTTCTGAGCATCAAGTAAGCCTCGACA
GCTTTCATCAGCAGCAACAGCAACTCTGTATTTCTCCATAGCAGCAATGCTAACTTCACG
GAGACCTTCCCAGTCATCTCTATGTACTGGTTGCTCAAAGAGTACAGGAGTCACTCCCAT
TTCTGAAACCAATGAAATAAATAAATTATACTAGAAACACCATACAACATCACACTGACT
GAGATATTAAATAGTGAAAAGATTGAAGTACAAACCGTTTAGTCTGTCAAGAACTTCAAT
TGCTTGGTTTGCTGTGTACCCTTCATTTGCATCCAAGATAAACGAGCAGTCGGGATGGAC
AAGCCGTATAGCCTTCAGAACTTCTATGTCTGAGTTCAAGTTTTTCCCTACCTTGAGCTT
CAGAGTTTGAAACCCTTGTCCACGATATTTTGCGGCCAATTGAGCGGCTTCGTTTGGGGT
CACGATTGGAATCTAAATTCAGAAATAGATGAATTTTAGCAATTTTGGTAAGCAAACAGA
AGCATGCTTAATCCACTGCAGAGGATACTTCGATAACCATACCGTGATGTCTGTTGTCAC
GGTGTTTGATGCTCCCCCAAATAATCTCCACAAGGGTATGCGGATGCTGTTAGCTACCGC
GTCAATAACTGCCATCTCCACTCCTGCCCTGGCCTTTGTTGGAGAAGACCACAAGTAAAT
ACACACCAGAGGAACATCCTTGTGTCCAAACACTTACGAAATCATGAAAAGGAATTCAGA
TAGTAATATACTGTATTTGACCAAGTTCCAAGAGAAACAATTTAGCAGTTCTATGTGGAC
TCAAAGGATCCAACTCTAAGAGAACTGAGAACCAACTTTCAGCTTGAAGTTAGGCCTTGC
CTGATTTTGGATGTAAATTCTTTGTTATTGGTGGCTTGCGTTCAGAGTCCCTTAATTACC
TTTTATGGTATCATGTGTTGTTAAAAGTAGATTCTGAATGCGCAGTTGCCATTCATTTTG
GGATCAGGGCATGATCCACTGGTCAACCACCTCAATCGGTTCAGAGCTATATCATTCAGG
GCGATCTCAGACTCCATTTACATCAAGGCCTGGCATTCAAACTTAAATTCCCCATCCTCC
CATCAACATCAGCTAAAAGAAGTTACTTCTAAACTCTGAAGTCCCAAACCAAATCCATCT
ACTGTCTTGTGGTCGAGAACTTCTCAAACTGTCAAACTCCGAAAGAAAACTGAAGAAAAT
TTATTTTTTTGCGGAGGTTAGGATGGGCAAGCAGGTGTGGATGTCTCACCGATGCGAAGG
CGTGTCCGGGGAGCGCGTCGGCGACGTCCTGGAGCACCGCGCCGAGGGGCGCGCTCCGCG
CGGCCACGAGCAGTTCGCAGGCGCGGGCGACGGCGGCGAGCGCGGCGGGCTGGTCCTCGG
CGGTGACGGAGGGGAGCACGGGGGCCTCGCCCCAGCCGACGGCGCCGCTGGAGAGCTCGA
CCCGCACGGCGACGTTGGAGACGGCCTCGAGGCGCGAGGAGGCGATGGTGAAGGGCGCGG
CGAGCGGCACGTTGAGCGGGCGCGCCTCGGCCGCCGCCACGTCCACCGAGAAGGTCTCCT
TGAGCGCGTCGAAGCCGAAGGCCTCCATCGGCTCCTGCTGCCGCTGCTGCGGGGTCGTGG
GGGACGGCGACGGCGACGGCGAGATGGCGCGGAGGCGGGCGGATGGCTGGCGGCCGGCGC
TGGCAGGGGTGAGTCGTGGGGTGGGGCTGAGGAGGGGCCTTGGGGTGGGAGGGTTGTGGG
AGAAGCGGAGTGGGGAGGAGCGGGAGGAGGAGATGGAGGTGGAGATGGAGCCGTCCATGG
CCGGCAGCGGTGGGACGTTGACGAGCGATGGAGATTCGCGGGAGGCCGGCCGATGGAGGA
TCGAGCTGCAGGCCTGAGCGAGCCGGCCGGTTTCTATATAGAGTGGTTGGCGCAGTGGCG
ACTGACGATGTGGGGCTGGGTCGTCAGCGGCACGCCGGAGCTGGAGAGGAGGAGGATAAG
GAGGTGGCAGAGCAGTGCACGGGAGCGGGAGCGGGCCCACGCGTTAGCCGATCTGGCAAA
GCGTCGAGTGGCAGCTGAGCACGGAAGCTGAGCCGGTGTCGCGATGCGGCGGCGGGGCCC
CACGTGCGGCGGCACGGGGCGAGGCTGGCGATGCCGTCGAGGAGGTGGATCGCCGGATGG
TCGCCGCGGCGGTGGCTGTCACGTGGGCGGAAATAGCCCGTGCGCCGGTGGGGCCCGCGA
CGCGTTCGGGACCACCTGTCGGTGAGCGCTGATGGTGACTGTGCATGCACGTTCGGCAGA
CTGTTTGTTTCGTCGCGAGGCGGAACGTCGTCGTGCGTGCGTCGGCATGGCGTGGGGCAC
ACACGATGATGAGCACATTCAGCACATGCCATGGGCCCTCGTGCTAGCACCCGTTCGTGA
CCAAGCCCGCTGGGATTCGTGAGTGCCAAGTACAGTAGTACACTACCCATTTTCTCACTC
ACTTGATTTGTTTGTTCATCTCGTGGCCGCCGGATAGGCTTAGGACATGTTTGGTTCCAA
ATAAATCATCAATTTATAAGTTGAAAAGTGTAAGAATTGATTTATTTTATTAAACAGACT
CAACTTATAAGTTACCCCAACTTATAAGTCATAAATTGGTTCATCCCAACTTAAAACTTA
TAAGTCATCTATTTTTGTGTGGGTCCCACCACCTTTTCGGCTTCAGGTGACTTATAAGTC
AGATGACAACCAAGCAGACGTAACTTATAAGTCACCTACTTTTGTGTGGGTCCCACCACC
TTTTCGGCTTCAGGTGACTTATAAGTCAGATGACAACCAAACATACGTAACTTATAAGTC
AGATGACAACCAAACAAGCGTAGGTTATAAGTCACTGGTTTTAAGTCACCTGACTTATAA
GTCACCTGACCAAACAGGGCCTAAAACTTATAAGTCATCCATTTTTGCATGGGAAGGTAG
TCAAGTGACTTATAAGTCAGATCACAACCAAACAGACGTGACTTATAAGTCACTGGTTTT
AAGTCACCAGACTTATTGAAACCAAACAGGCCCTTAGAGGAACTATAGACGATCCCCTAG
ATAATGCTAGACAAGTAAATCACCGAGGGGAGATTGCCATTTGCGTAGAGTCCAAAACAG
AGTCACGCGCCCTCCTCCCCCACACCGCCCTCCTCTCGCGACTCGGGGGCAAAACCCTAG
TTGTTGTCGTCACCGCCGTTCTCTGCTCCTTCCTTCGTCTCGTCGTCGCCAGAGGCGTTG
CCAGTGAAGCCGGAGTGGCTCCACTGACGGCGGCGGCGGGTCGTTTCTTTTCTGGGTGGC
TCTCCCCCGCGCGCGCAGCCGCGCTCTGTCTCGCCGTCGGGGGATGATGTGCCTGGGATG
CTGGCCATCGGGTGAGCGCGGGGATGTGGTGTGGCAGCGCGTCGCGGTTGGCTGTTGCGC
GGGTAGACTACGCTGGATCTGGTCTCGAGCGGGCCCGTCATGCCGGTGGACTCGGCTCGC
GGTGGCGGTGGCAATGTGGCACTGGGTTTGATCCTGCGGTGGCGACAAGCAGGCTCATTG
GATGAGTGTGTGGTGGTGATTTCGAACGAGCCAGTTGTGGCTCGGGCGATGGCGAACCAG
ATCTCGGCATGATATGTCCGTGGGTTCTTTGGTGAGCCGGTTGTCCTACCACGAAGATGG
AAGGAGCGGCAGTCTCCAGTTCTGGTGGTGGGTGCATCCAGGGCTTGGTCCCTGGCATAG
GTGTGCATTTCTCCGGACGAAAGTCTCCGTTGTTACCGGTGTCGACAACATCTTGTTGAA
GGCTTCACCGAGGAGTTTTGCACCTATCTCGCTCTCGAGTTCTAGTCTCCGGGTGAAAAT
CAAGATCTGCTTGTTGGATCGGCGATGGCGGCGCTCTTGGCGTCGTTTCCTCGATGGTAG
TATCGTTTCGAAGATTGACCTCTTCACTGGAGCACCTTGTTTGTGGTTGAGCAGTTGATG
GGGAACTTCCGATGACGAGATGGCCCTGAGGGGTGGCAGGGGGCAGCCGCCTCGGGCCCC
CCAAATCCAAGGGCCGGTTCTCCAGGTAACCAGCAACATGTAGTAGCCTAGGACGCGACG
ATTACTGTACTGTTTTCCTTCCTCTCTCTTTATCTATTTTTTCGATAAAGAGTATATATT
AATATCGAGGAGATACCAATTACACCCAGCCTCTGCAACAACGCAATGCCCTAATGGCAT
GACGGATGCACACAACCAAAAAACGAAGAAGGAAATAAAAAAAGAAAAGTCCCGCTACAG
AGTTTAAGTACTTGCAACAGCAGCACAACCCACTAGTGGGGACGGGGCCTTTA