morexGenes - Barley RNA-seq Database

Contig contig_46603
Source Contig contig_46603
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46603 (8648 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_46603

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62478	1	2218 bp	MLOC_62478.1	Available	Available	LOC_Os02g39790.2, FRAME:-2, EVALUE:0.0, 13102.m04418 protein CPuORF9 - conserved peptide uORF-containing transcript, expressed
CDS Structure of MLOC_62478

Contig Sequence (8648 bp)

>contig_46603 8648 assembly3_WGSMorex_rbca.fasta
TCCCTCCCTCTCTCTCTCTCTCTTAACAGGCAAAGCTTTTGCCTCTGTTTCAAAAGAGAA
GAAGATGAGATGCTCCAATTGCTTAGCTCAGTAGAGATGTTGGTCGTTTATGTTTCCTTC
TCTTGCAGCTTCACACGTTTATGTTGTATCGTCTCGAATAAACGTAGCACAACTAAAGGC
AGTACCTATCAATTCCTTCATTCCTTTAATACACATTGTTCCTTGGTTTTTGTTAACATA
ATCGTTCCCTAATTTGAATAATGATCATCCTACGGTACTCACATTTCTACAACATTTCAG
CAGATAAAATATAATGAAATCACAATATAGCCTTGAAAGATACCTAAATCAATACAAGAT
TACAAATCCAACCATATCAACTTTGAACAATAGAGAAAGTAAAAAAAAGCGCTAGTACCT
TCCTCGCATCTTTATTACCGAGCATCGACATCTCCAAGAGATAGTTCTTATCAAATTACC
ACAAGCGTACTAGTACCCGAACATCGGCACCATCCGAATTGAATCATATTCACATGGGCC
ACAAAATCCAATAGGACCACGACAAACTAGAATCACCTCAACAAAACTTAAAGGAAATAA
CAAAATAACATTTGCTCAATACAATGCTTATTCCTATATTCGTAAACCATGCAACATTTC
GGACACAAGCATTTCCATACATTCGTTCAGACTGGCAGAAAATGCCGACCATTTTCATGG
TACTTGTCCATAAAAATGTAATACTACTGTTAGGACAGGAAGACATAACACAAGCCTGAG
TATGGAGCCCTTGGATGGGACACGATAGCAAAGTTTGTCGTTATAGCATGAATCCCCATC
AGAACCTGATAAGCATGTTAAACTATCACTTCTCAAACCAATTTACGCCTTACCCACTAC
AGATACGAGGCCAAGCGAACATCTTCTAAGCATTGAGAAGATCCAAATTGACCAAATCCT
GGTGTGGCAATAGAAGTAAGAATTCCAGCATCGCCTCGCCAACGCGATCAACCTCACAGA
CTCTCTTAATGATTTCGTCCATCTCTAACCTAATCCAAACATCCTTCGTTGTATTACATA
GAAACAACAAATGTTTTATATCCTCTTCTCTGGACCAGCCGAACAACAAGGACAGTTAGA
TTCACACTCTAATTTGATAAGTCACATAAGTCCCAGGAGGCCTTCAAGGTGTGGTGCTCT
AGTTGCTTAGCTCAGTATAAGGTTGTAAAGAAGTCGAGTTTGAGCAAGTTGAACTAGACT
TCACTCAACGTATACTTCAACCAAGCTCAAATTGGAAGAAGGTCAAGGTCGAGCTATAGA
AAGTGGCTCGTCCTAAGCTTGTAATGATCTTGCGTCAATCTTGAGCTAGTTTTCAAGTTA
AATAAGATGTTTTTTTATATATGTAATCTAAATCAAGTTTAACATAACAGTCCACAACGC
AACATAATGAACCACTATAAATATTATTCTAATAAAGAGAATTAATATGGTTTGACTTAT
TCTCTCTCAACTAACGACAAAATAAAAAAATGCCTCTGCTTTGAAACTTAGGCCTAAAAT
AGCATGATATTTAATACGTACTCCCTCTGTTCCTAAATATAAGTTTTTTAGAGGTTTTAC
TAACGAACTACATACGAATGTATATAGAACTACATACGAATGTATATAGACATACTTTAG
AGCATAGATTCACTCATTTTGCTCCGTATGTAGACCGCTAGTGAAATCTCTTAAAAGACT
NATATTTAGGAACGGAGGGAGTGGTACATAGCTCACCATGTACCACTTACAAGCATAAAT
TTTTCCCACGCTTAATCAAACTTAAGCATAATTTTTTTCGTGCTTAATCAAACTTTCACG
CTTGCTAGATCATACTTCCTCCGTTTCGAAATATTTGTTTTTCTTTTGAGATTTCACTGC
GAACTACAGATGTATATAGATATAATTTAAATTATGGATTCACTCATTCATTTTACTTCG
TATGTAGTTCGTAGTTGAATTTTTAATAAGACAAATATTTAGAAAAAGAGGAAATACTTA
CCTTATTTTTTCGAGTTAATCTCATGTAGAGCAAAATGTCAAATCAATCTCTGAGAAGCT
AAAAGACGGAGTCCATCCCAAACAGCTCATGAGCCTAGAGAATGGAGCTTTTCTTGCAAC
CCTAGCCCCAGCGCAATAGCAACGGTGGTTTCTATAAGTTTCTTCTCAAACCCTACGTTT
TCATAAGTTCCTTCATAAATCTTACTCTCTTCGTTTTTAAATACTTTCTTCATCTTAAAA
TAAATATTTCAAATTTATATTAATTTTAATATAAAATTATATTAAGCTTGAGACATTTAT
TTTAAGATGAAAAAAATATAAGTTTTTTTTAAATTTCACTAGGGATCTATATATGAAATA
AAATGAGTGAATATACATTCTAAAATATGTCTATATTCGTATGTAATTCCTTAGTAAAAC
CTCTTTAAGATGTATATTAAGAAACAGGGGGGGTATGTCGGACGCTTAAATGTACTTTTG
TTAAAGGCGGTGCCTGATTCTTGGCTTGTAATAACCGACTGTACTTTTGTTAAAGGCGGT
GCCTGATTCTTGGCTTGTAATAACCGACTCCCCGCATTTCTACGACATTTCAGCTAGTAA
TAAATTACTTCAAATATGAGACGTTTTAGATCAGCAGAATAGAATCAGAAGTCCAACCAT
GTCAAAATCAATGAACGATTGATACAAATTCATCCATCTCAACTTCCAGTGGCAGAAAGT
AAAAGAGCGATAGAACCTTCCTCGCATCTACCTTATCCTTATCTAGTATCAATATCTCCA
AGAGATGGATTCTCGTCAAATCACCACTAGCGTACTAGTGCCGGAACCTCAGCATATCAA
AACTGATTCAGATCCACATTGGCCACTTATAATTCAAAGGTCCACGTCATACGAAAATGA
CTTTTCAACAAAATTTTCCAGGAAAGAACAAAATAGCATTTGATTAAATACAAGGCTTAT
TCTTATAAACTCATAAACCATGCAGCGTTTCTGATAATACAGGTATTTCCATACATCTGC
TCACACTGGCAGAAAACGCTCACCATTTTCCCGGTACTTGTCCATAACAAAGCACTAGAG
CAGGAACAGGAAATCTCTAATAAGAACAAACCGACGTAACACAAGCTCGTTCAGACCGGC
TAGGCAGCTAGCATCGCCATCAGAAGCTCCTCATCTTCTTACCATCCCCCCTCCTCTCAT
CCTTCTCCTGCGCAGCATCGTCTTCCCAGCAAAGGAAAGCATCCACCTTGGATGCACTCT
GTAAATTGCCATCAACGTAGCAATTCAGAACAGATCTTGGCGACCCACTGGAGTCTTCAC
CGGCAGCAGTGAAGCTCTGGTAGATGAGAGAGCCCCCGCCAGGCAGCTCCTGGACGACCA
TGTTGGTGCTATCATAGACCCCAACATTCAGCCTCTCGCCCCAGGTCCCAGCAAGGCTAG
GGCAGCCGAAGATGGTCACAGCAACAGAGAATTCAGACGGGCCAAAGGATCGCAGCACCC
TCTTGACCAGGTCACCATAGGCCATGGAGGCAGGGTCTAACCCCATGACCTCATAGCTAC
CATAGCTGAAGCCGTCCTCGGGGGTGACATGAATGGTGGAGAAAGCAGAGCCATGGATGG
CGTTCATGGAGTAGCCACACGGCTCGAAATCAAAGTCACAGATCTCCATCTCCGGGATTA
TGTCAGAGATGCCAGAGAGCTTGGTCATCTCCTTGGCACAAGATGTGTGGCCATCAGCAG
AGGTCTTGAAGAAAACGGAAGCTTTCTTCTTGTCCAGACCAGTCATGCACATCTCAAGAT
TGACCACAGGCTGCTCAGGCTGCTGGGTGGCGTAGTAGACATGCCACTTCTGGCCTGGCT
TTGCAGGATCGCCGATAACATAGGCATTGCCGCCAGACTTGAGCCCACCGAAGTAGCCAT
TCAGGAAGGCAACCTCGTCAGAGAAGTTCTTGTGTGGAGAAGGCTGTGCTTCAGGGAATA
TGAATGCCCCACGGGAGTACTTCACAGCAGCAAGTGGCAGGGCCAACTCCTCGGCAAGCT
CAAGAATCCTTGGGATGGCCAGCAGGAGCTTGGTGGTACCGCAGGTCTTGATGACAACCT
TGTACGGGTACACGAAGAGGCTTGATTCAGAAAGGACATACGAGTCAAACTTCTCATTGG
AGAGCTCGGATACAATGGTGCACTTGGCAAGATCAAGAACCGAGTCAATCTGGGGGCGCG
AGAGAGCACGCAATCCCCTGCCATTGGGGTCAGTGAAGACTGACGCTTCAGAGAAAGTGA
TCTCTAGGCGCTTCTCATATCCCTCAAACCCAATGGCAGAGACAGCCATTGCTTCAGAAG
GTTGGTAGAGGAGGAAAGGCTTTGGTGGTCAGACAGAAGCAGCTAGCCATAGAAATTTTA
GGAAGATGAATTGAAAGCAGAAGGGAACTCTAAGCAATTAGAATGGGGCTCAGGAGGGAT
TATCAGGATGGCTTCCTGGAGCACTGCAAAACAGAAGCAATTTGAAAGTTGAAACCGTGA
GGATCTAATCATCAACGAGGTAAGCAACGACGAGGAGGAGCTCAATTGATTGGATACATA
CGTTTGAGTAGGCAGCGGAGCGGAACTTCTCAATGCCGCCGGCAGGGCGGAGGTCCTCGA
TGCTGTAGCCCAGGGGAGCTTCGTACATGAGGGAGGAACGACTACTGCTGGACTTTTTAC
CACCCTCGGATTCCATAGCACATCAAATTCTGCAGTGCAGTGGTATGGGTTAGAGACGAT
GAAGCAAAGAACATATTGCAAGGTAAAAAGAGGACGGATATCTTTCTGGGATTCCCGTTT
CATCAGCCACACATAAAGTAGATAATATTTCACCAATTTCTACTGAATTATTAGCCTACA
TGATATTCGACCTGATTTGAAGATGACTACTTCCAGTCGGCAGCATAACAGAAAGCAAGG
AAAGCAGCCTAAAACAGAATCCACCAACTAACATCAAGTAATATAAGATGCGCAAGGGCA
GACAAAATCTACCACAGATTGATGTACCCAACAGCATATTCGTACAGTAAGACAGATAAT
TCAGACGATTCACGACTCCCTTGCATATATATATTTCACAAGGTATGTGAAATTACAGAT
AATGTAGACTACGTTTAGTTAATTTTCCTATACAGCCTACTACCGGGACGAAAAGGATTA
TGATTCCTAGGTACAGGAAAGAAATTTCTACCACAGATCGAAGATGGGATCAAACGCAAT
TAGAGACAACATAAGCCGATGGCGAGAAATCTTACATTTCCAGGAAGAACCTCGGAGGCA
CGTGACGAATCTGCTCCTCCTCCTTGTCAAAAAGGGAGCAAGCGACGGATCTGTCTCTCC
GCCTCCTCACAGATCTGGGGAAAATGAAAGCAAACGGACGAACACAACCTCACTCCGAAT
TTCTAGGTTTTCGATGGTGGTGGGGAACGCGCGGAGTTTGCGTTTGTTGTAAACAAATGA
GGCGACTTGCAAGATGGGAAAGTCACCACGGCCTGGGCAGCGTATTTATAGGGGGGGCGA
GCGAGCCCTGAAAAAGGACCAGGTCCAGTGGACCGATCGGGTAGAGGCTCACGGGCGGGG
GTGCCGAGTCACGGTGGACCGCGTTCTCGCGCCTTTGAGTGCAGACTTCGCGGCGCGGCG
CCGATATGCTTGGCTGGGAGGGCTCCCCGCGTTTGCTTGGCCCAGGAGGCTTCTCCCATG
GGGAACGGAATATTTGGGACGCGCCGAGCTGTCCTGGAAGGGTCTCGGCTCGACACGTGA
GCCGTTGCATGCACTGTACGTGTGGTGTGTGGATCGTTTTTCCTTTTGAAAAGGAGGTGG
GGTTTTGTTTCGTGTGGAGGAGTGGCTCCGTTGCGCTTTTTTTGATTCTGTGGCGTGGTG
GTCGGATCGCTTGCCCCATCCGGATACCGGTGATTTAGCAGCTGAGGTTTCCACCATCTC
ACGATGTGTGGCACACGAAATTGGAAAAAAGTTGTGCTTACTTTCTTTTATACTTTTCCG
CCTCCTTGAAGAGCATCTCCAACACTCGTACAAACGTCTACGGCGTCTGAAAAATACTGT
TTTTTACGCCGGCGTAGCGGTTTCGGACGCTTCAACAAAGACGTAAAAAATGTGTGCGGG
GACAAAACGGCATCGCACGCCGCTTATTTCATGCACCCGCTCCCGCGCGATGCACAGTCG
AGCGCCCGCGCCGAGACTTCCACCTGCCATCATTCCAGGCGCTGGCGCCGTCGCCCGCAC
CATCCTGTTTGCTCCGGCGACCCGGCGGTGCTTTTCCGGACTATCCCCACGACGCCATTG
CTTCCTCCGGTTTTCTCTAGTCGCCGTCGCCCCTCGCACACGCCGATCAAGAGACTTGAA
TTTGGCATGACTTTTTCGAATGCCTCGATCTTTGAATGACATCAACATTGTTAATCGGTC
ATCACTCGTGAATAATATTGCAAATGATGAATTGCCACCAGTGTAGTTTATAGCAAATGG
TCGTACATACAACTATGGTTACTATCTTGCGGATTGCATCTATCCAAAGTGGCAAATATT
TGTGAAGCCGTTGAAAAAATCGGAAGGTAAGAAAAATCTTGATTTCCACAATGCTCAGGC
GACGGCTAGGAAAGATGTTGAGAGAGCTTTTGAAATTTTGCAAGCCCAATTTGCTATTGT
GAGAGGAGCGGCTAGATTTTGGGATCAAAAGATCCTTTGGTACATCATGCACGCTTGTGT
GATCATGCATAGCATGATCATTAAGAATGAGCGTGGCCAAGATTTAGACTACTCTCAGTA
TGAGCTCTTGGGACATCTCGTGCGAGTGCGGCGAAGGGTTGCAAGGGTGGTCCGGTTTGT
TACCTCCTATCATGTCATTCGACGTAGCGAAATGCATGATGATTTTCAGAAAGATCTCAT
CGAGGAGTGATGGGTATGGAATGAACAACAAAACGCATGATGATTTGTTGTATTAGAAGA
TAAACTATTTGTAGGTGTTGTAATAAAATTGGACTATTTATTGTTGATTATTTTTTATGT
GTTTGATCTTCTTGATTTTGTTTGGAGTGTATATGTTGTTTGTGTTGTTCGTGCGCCGTT
TATTTGCAGCGACTGCTGGAGCGGCTCGCGCGGGCTATAGTTTCATGCGTCCGCTGGAGC
CAGCACTCGGCTGCGCGTAAGAATCGACTATTTCGACCATGTAAAGTGTTTTTTGAGCGA
GGCTGTTGGAGATGCTCTAACTAAAGCCATTAGGGTTTGGGGCGTCACCTTGTGGCACCT
CTAGGAGGAAGCTGGGTGGTGCGAGGTTGGCAGACGTTAATTTCAGTTTTTTTCTATCTT
TGGTAACACATAGACATGGCATTTAAGTAAGAAAATGCACTACAAATTTCAAAGGAAATA
AATAAATGACAATCAAATACAATAAAATTAGGTTATCGGAAACACAAAACACTGGAAGAC
ATAATATAGAATCAGAGAGAGAGCCCACACATATACTCATAAGTAATGAATTCATCATTC
GATTGTGACACGAAGTGCTATACCAAGACAATAAAAACACAATGATTGGAAATTTAAAGA
GCTTCAAGCTGAATGCTCAAATTGTAAAATCACCAAGAAATGCCACTCACTTTCATAGAG
ATCTCTGGCTACCAGTTCTTGACATGGTGGATTCTGAAACATGCCCTGCAAAGCAACGAG
AGGAAGACACTCTTCAACATGTCTCCTAAGAACAGAGACGGGGATACATGCAGCAAGAAG
TACCCGAGAAAAGAGACAGGGAGTGTCACCAAGTTTAGTCACCAGATTTACATTATCCAG
TTTTCATTTTAAGAGATAACAAAGCCAACAGTCAAATTTCTATGGGCAGAGATCCAGCCA
TAAGTACTTAAGACAAACATATAAGCACTAAAATATATGGGACGTCCTTCAAAATTTCAG
TCAACCTTTCATACAAATCTAAGCAAATCTAATAATGCTCCTTAATGGCAGATGGTGAAA
AAATGATGGAAGAGGAGGTGATGCTGCTTACCTCGCTGCTGGTGCCATGGATCTGGAGCT
CACGGGAGAGGGGCGCTTCTTCCCCTCTACCTTACTCGATCCCGGCCAGGATAAGGGCCT
CCTAATATCTCACACTCAGATTAGGATGGCTGGCTGGGTCCTAATCTTATCCCTAATCTG
AGCTTAGCACGGCAGAAATAGTTACAACATGAATTTAGAAATGACATCTAACATTCATAT
AAGAGACCTATATCAATAGTTGCACGTACACAATAACATCAAGAATATGTGAGTGTCAAT
GAAAGCACAAACCGAGCATCAAAGATGGCCTGAAGGGAGCACATTCAAAATATACGTCAG
TTGTGCACCTCTTAAGATGTATTAATATGAAAATGTTTATTGGGTTTCACTGCGTTCAAT
AGGCAGATTATTCTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATGCATATCATTTTCATGCTCAAGATTGGAATTGCGGAAGCAAATACCAAT
TTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCGAAAGAACTTTTTTTAGGATTAAAC
AAAAGGGT