Map Locations of contig_466018 (10227 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_466018

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62474 1 264 bp MLOC_62474.1 Available Available None
MLOC_62476 1 1017 bp MLOC_62476.1 Available Available None
MLOC_62475 7 3826 bp MLOC_62475.1 Available Available LOC_Os02g51620.1, FRAME:-3, EVALUE:0.0, 13102.m05875 protein glycosyl hydrolase family 3 protein, putative, expressed





CDS Structure of MLOC_62474






CDS Structure of MLOC_62476






CDS Structure of MLOC_62475






Contig Sequence (10227 bp)

>contig_466018 10227 assembly3_WGSMorex_rbca.fasta
ATACATTGAAATATGCTCACCTTGATAAAAAAGATAATATCCTATTATTATCAACGCTAA
ACTTTCAGTGCACGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGG
TTTGGTAGGAGATAAGATTATTGAAAACCTTAAAGAAGCACCGTGCCGCAATTGGATATA
CTCTGGATGATCTCAAGGGCATTAGCTCCACTATATGCCAACACAAATTTAATATGGAAC
CCGAGGAGATGAGATTGTTGAAAATCTTAAAGAAACACCATGCCGCAATTGGATATACTC
TCGATGATTTCAACGAAATTAGACCCACTATGTGTCAACACAAAATTAATATAGAACCCG
ACGCCAAACCAATTGTCGGTTATCAATACCGCTTAAATCCTAGGATGAAGGAGGTTATAA
GAAATAAAATATTAAAACTTCTAGAGACATGTATAATTAGCAGATATGATTTCAATGAAG
TGGTACCAAAAAAAAAAATATGACTTGAGCAAATCCTTTGATCCTCTCTTTATATTGGGG
GATCACTATAACTCAAGAATTACCCAAAAAAGCAATGCTTATTTGTCGTTGTCGCATCTT
GTTTAGTCATAAACATTTCAAAAGGTCCATGGTCCACCCACCTAAATCAGGAGATGACTA
AAACTTGTGTATATACTTAGCAAACATATTTAGTTTCCTATATGTGTATTATCGTCAACA
AAAAATAATATGATTAAGACATGATTGCACATTCAGATCGATACACACCGATCAAACGCT
CACCCATACATTGTGCACTACGCATAGTCGATTGGCACAATTAGAGATTTCCCACATCCC
AGTTTTTTTTCTTACGTGTTTTTCATTGCCTCTTTCAGTTTCTACATTTTCTTTTATTCT
TTTTACTTTTCACATTTTAAAATTTGGGAACATATTCGAATTTCACAAACAATTCTTGAA
ATGTATTTTGAATTTTTGAATGTTTTTTCCAAATTCAAGAATATTTTTTAAATTGGCAAA
ACAATTCCAAATCTTAGAACATCTTTTGAATTCGCAATGATTTTATCAAATTGATGAACA
CTTTTAAATTTCACACATACTATTTGAATTTCCAAATAATTTTTTGATTTTTTTCATTCA
AAAACATTTTTAAATTTGTGAACATTTTTTGAATTCACAAACATTTTTTAATTTTGCGAA
TTTTTAAAAAAATTCGAATATTTTTTGTATCCACAAACATTTTTTGAGTTCGTGAACATA
TGTTTTGTAATTTACTTTATTTACATTCACGAATATTTCCCCAAGTCGACAAATAATTTT
TGAAATTTGGAACATTTTCTGATTTGTTCGTATTTTGTGAAATCTCTGGATTTGAATTCA
TGAACAACCAAAAAGGCAAACATATTTTGTACGCATGAGCTTTTTTCAATTTCACGAATA
TTTCCATAATCCGTAAGCATTTTTTGAATCAATAACATTGGTTCAAATCCATGAAAACTT
TTGTATGCACATTTTTTGTATCCATGAACTTTTTTGAATCTTCAAACCATTTAAAAATTC
TGGAACACTGACATTGTCTCAAATCCATGAACCTTTTTCTAAATGCACTATTATTTTCCA
AATTGACGCATATTTTTTGAATCCATGAATTTATTTGAATCTTAAAAAAAAGTCAAATTC
GCGAACTTTTTTTTGGCTGCGAACATTTTTTCAAATTGGAGCATATTTTTTTGCACTCGG
AGATTGCTTGTATCCGTGACTATTTTTTAAATTCACAAGCAAAACTTTCAATTCGTGAAT
GGAACACTGCCCGGACGAGAGCTCCTCCTCGTGGGGGGCTGGCGGGCCTTTCCCCCCTCG
TCGTCGCCGTCGCGCCTCGCCATTCATCTGGCCGGCGTCCTGTCAGTCAGCCGCCCACCG
CGTCAAGATTTCTACCGTCGACGGTGGCTTGCACGCCTCCACTTGCCGCCGTCAAATCAG
ATGATTGGGGGAGAAAAGCGGATCAAGTTTCCAAGTAGATGATAACAGCATCGTTTGTAC
CTTTCGGTCGTTCGTTCTACGATGTCGATCGCAAGCTTGCAGCAGATGTCTCACAGTCTC
AGTACATTGCGTCATTGGCACAAACAGTGTGGAAAGAAGGATGATCTCGCTTTTAATTTA
TCATCATTATCTCCTTCTCATAAGTTACGTGGTTACAATTTATGATCGAAGTCCTCCTCT
GCCGAAGCAGCAGCAGCAGCAGCAGGTTTATCGTGTTCGATCGATCCAACCGCCGGCCGC
CGGCCGGCTGGCTCAGGCCATGAAGCTCAACTCGAACTCGTCGTCGCCGACCCTGACGAA
GTGCGAGCCCTGGTCGATCACCTTGCGGCCGTCCTCCGCCGCCCGGCTCAAGTGCTTGCA
GGGGCTCACCTCGAACTCCACGTGCGCGGCCTCGTCCGCCCGCAGGTGCACGCTCTGGAA
CCCGATCAGCTGGCTGGCGGGCCGCCCGTCCGTCGCGTTCGGCCACCGCAGGAACAGCAG
CACCGGGTGCCTCCCGTCCATGGGCCCGTGGTTCTGCACCCGCACCACCGCCGGGAACCG
GAGCCTGTCGCACGCCTCCGCGCCCATCTCCTCCACGTCGTAGCTCACCGTGCCCGCCGC
CGACGCCCTTGCCGTCGCCTTGAGGCCCTCGATGCCGCTCATGGACGGCGGCTTCGTGCC
CTTGGACGCGAAGCGGTGGGAGTACTTGGAGTAGCTCAGGCCGTAGCCGAAGTTGTACAC
GGTCTTGCCCTTGTAGAACCTGTAGGTGCGCCCCGGGTAGCCCGTGGACGGGTCGGCGCG
CATCCGCATGTCCGTCATCGGCACCGCCGTGAACTCCTTCGGGTACCACGTCACCGGCAG
CCTCCCACCTGACGATCCGTGATGTCAAACAGTCAGTACTTGTACAACTTAGGAAAACGG
CCAAGGATCGTTCAGAGTGGAGTGAAACTCTGAAACAACATCTCACCGGGGTTGTGGTCG
CCGAAGAGGACCTGGGCGATGGCGATGCCACCGGCCTGGCCAGGGTAACCAGCCCAGACA
ATGGCGCCGATCTTAGGGTTGTTCTTGGCGAACGTCACGTCGACCGGGCCACCGCAAAGC
AGCACCAGGATCACCGGCTTCTTGGCCGCGTCGGCCACGCTGTTGACGAGGCTCTCCTGC
ATCCCGGGGAGCCCCAGCTCGAGCCTGTCCACCTCCTCCCGCTCCTGGTTCTGGTCCAGC
CCCATGAACAGCACGACGTAGTCCGCCGAGCCGGCCGCGTGCACGGCCTCGCCGATGTTG
GACACGTTGCAGACGGCGGCGTTGCAGCCCTGGACGAACCGGGCGTCCTTGACGTACCCC
TGCAGCGCCTGGAGCGGGGTGACGGAGATGCAGGGCGGCCCGAAGTAGTTGCCGAGCAGC
AGCGACGCGTTGTTGCCGTTGGGCCCGATGACGGCGAGGGAGGAGACCTTGGACTTGGAG
AGGGGCAGCGCGGCGCCGTCGTTCTTGAGCAGGACGATGCCGTCCCGCGCCACCTGCAGG
GCCAGGTCCTGGTGCTCCTTGCTGCACACCTGTTCGGCGCCGATGTTGCCGTACCGGTTG
TACTTGGGGTTGCCGTTGAAGAGGCCCAGCCTCATCCTGATGGCGAAGAGGTTGCGGAGC
GCCCGGTCGATGTCCTCCCCCGTGATCTTGCCCTGCTGGTACGCCGACACGCCGTGCGTC
TGTATGTAGCCGCCGCAGTTCACGTCCATCCCTGAAAGGTTGGTTTTCAGGTTACAAAAC
AGTAAAAAAAAAGAACAAATTTTCAGCGTCGTAGATATTTATTTTCAATTTTTTTTGGCC
AAATTGAAAAGAACAAATATAAAAATCCACTGAACCAACTTCTCGTTATGGTTAGTGAGC
TAACCCAACCTATACACTACACATTTGCGTTATTTTGTGATCTTGTCCAATCATGCTTTC
AGTTCTAACAGCTTCCTAACTGCCCGGAGGTTTTCCAGATGAGATTAATTGATTGGTTGA
TTCTTGATACGTCACATTCGCAACTTTTACCCATAACGAGCAATGGAACTACTAGTCTTT
GAGAAACTGTAGCAGGTCATGTGACATGTACCGCTGACAACTACATACAAGTATCTAGCA
ATCGTCATTTGAAGTGAAAGAACGTACCGGCCTTGAGGACATCTGCCACCGCGTCCTCCG
GCGCCTTGGCATACCCCTGCACGTCGTGGATGATGGCCACGGCGTCGCAGTCCGACGTGA
TGTATCTGGTCAACAGAGATGAAACTTGCAAGCGTCAGCCAGTGAGCAACGTAAGGTGGT
GAGCCTTTCGCAGGCCCTGATTGATTTCACTGAGAAGGTGTCGCTCACCCGTTGAAGCTC
CAGTCGCCTCTGGCGGTCTTGGAGAGCAGGTTGTGGTCGGCGCAGGTGGGCACGCCATTG
ACGCGGTTGTAGGAGCACATGATGCCGCTGGCGCCGCCGTCCTCCACGCAGCTCTTGAAC
GGCGGGTTGTACGTGTCCGCCAGGTCCTGCTCCGTCACCTGCCCAACAAACAAGACGTTT
TTTGGCACAGCATGCATGCATGCACAATTCAGACTTCCGAGAAGAGAAGCCGACGATCGA
CGACCGCCCGAGAGAGAGAGACAGTAGGATATGCATAGGAATCAGGAAGCTGCCATGCCA
TGCCATGCCGTCGTCATCAATGGCGTCCGGACGAGCGGCGCTTAATCAAGAGATTGGCGT
ACCTTTGCGTCGAAGGCGAAGCGGGTGACGCCCTTCCAGTTCTCGAGGTCGTAGGCGGTG
AAGTGCTTGCAGCAGGCGGAGGCCTCCAGGTCGGAGGAGTTGATGGCGCCGGACATGCCG
TAGCCCTGCACGCCGCGGACGAACACGGCGGCGTACTTGCCCGTCATGGTCGGGTCCTCG
CCGGGCGTCTCCTGGCCCCGCCCCCACCGCGGGTCCCGGAACACGTTGATGTTGGGCGCC
CAGAAGGTCAGCCCCTCCGCCTGCCCGTTGTTGTACACGCCCCGCGCCTCCGTGCCGATC
ACCTGACAACAAGTTTCACTTCAGTTCACACCGCACTCCTCTTGCTCCTGCTCCTGCTCT
GTTCTTGCCAACCCCGTTACTCTGTTTCGTTTTATGATTACTAGTAGGTTTTTGTGTGCA
CTATGGTGTTTGAAGGTCAATGTTGGTGTCAAAAGCGGCATGCATGCACCTACCACCTTC
GTACTACGAGGTAGTAGTGTAGTACGTAGGTGTTCAAAAGATCAAGCCCGGTTGGTGATG
GTTTACCGGCCGATTTGCGGTGCCCCCATTTCACCAAAAAGTCTACTTGATCCCCATGGC
TGGTGAACCAAAATTAGGCCTAAAACCACAGCCCGGGAGTCCTGGTCTCTGATCATCGGC
ATCGTTGCCGAATCGTGTGAACAAACGGCACGCGATCTCAAGAAGAACACACAGTGACGA
GGTGAGCGGCGGAGGTCGTGTATATACCTGGCCGATGCGGTACCAGAGGTGCGGGTTGAA
GGACGCGGCGGTGAGGATGACCTGCGGGAAGCTGGTGGCGGCGCGGAGCGGGCCGTTCAG
GTCGACGCCCTTGCTCCACGCCACGCCGTGCAGCGCCTCCGACCACCACTTGTACGCCGG
CACGCCCAGCCGGGCCACGGCCGGCGACTCGTCGCCCAGCTGCGAGATCTTCTCCTCCAG
CGACAGCTTCGACACCAGGTCCGCCGCCCGCCGCTCGGCCGGCAGCGCCCGGTCGCAGTA
CGCCGCGTCCGACGCCGCGCCGCAGGAGAAGGGCGGGTCGGCGGCCATGGCCGCGTGAAG
GTGGAGGAAGGCCAGCAGCAGCGCCGCCGCCGGGACGATGTGCGCGCGGCGTCCCATGGC
TCTAGACTCTAGGGCGCGTGTGTGTCACTTGCCCGGAGTGACGCCGGCGGGCTGGCTGAC
TTGGCTATGGCGGGGGGCGAGGGGCACTATATATGAAGCAGAGGGCGCGGCGCGATACAG
GGGAGCATGGGCTCGTACGATTTGGGCCAATTGCTTAGTTCTGATGACGACATGATACTA
CGCTTGTACTGTACTATTCTTATTAGCTGTGTCAAATCTAACCTTAATAAAAATGGTATT
TTTTGAGGGGCCTTAATGAAAATATTGGAAGTAAACGGAAATATTTAGAAATCTCGGTCA
TTTAGAAGTGTACGCCGTAGGTAGAGATGAAAAAGAAGTCGAAACTTTTCATTTTTGGTA
AAAGAAAAAGGAAAACGGAGAGGAAATATGGAAATGAAAGCGGAAATTTGCAAAATGGAA
ATTTTATGCAAAAACAAAAACAAAATCGGAATGGTTTTTTCCTGCGGAATAAACATGAAA
ATGGAATTTTCCGTGTCGATAATGGACTATGCATACTTTGCATCCTAACCATCCCAACTT
CTATTACCATTCAAGAAAGCTAGCCCTTATTGTTACAACCATGAAAGCCGGGCCTAAAAC
TCCCCTTTATAGATTATTTTATGATGCTACAGTGTGTTTTACTTGTGATGGTGACCTCAT
ACAATGGGTTTTGCTTATATGCAGGGCTTGTCCTTCCGATTAACACAAATGTGTTTGTGT
TGCCAATGTTAAAAAAATATATGCACAACCTCGTATTCTATAATATAACCATCATAATAT
GTTGTAGTCATGTCAACACTTGATAAATATGTTGGTTTGCTTGTGGTTTTTGCCTTTGGT
TCAAGGGGTTTTTATGTTCCGGTGAACACCTGTTTCTATTTTAGTTCTGTGTCGTATTTG
CTCCGTGTTCATTTCCGGTAATATTTGTTTCCGTATTCATTTACGGCGTTTCTATAATCG
TTTCTTCTTCCGTCAAAGAGTATGAAAACAAATGTAATAGTATACAGTTTGGTTCGTTTG
CGCTATATTTTCATCCCTACCACTAGAAGATGCACCACGAAGATTTGGGTGAGATGATGT
GTGTCAAATATTTTGAGCCCTTTTAAGATGGTCATCCCGCAACAAAGAAAAAATGATGGT
CATAAAAAATTCCGATCCGATGGCTAGTGTTATTATTACCTCTTCGGATATCTCTCAAAG
AGGTTTCACTTAATAAAAAGGGTAATAAAAATGTGTAGGTCCACTTAAAAAAACATTGTA
GGTCAACAAAAGATCTTACACTTCTACGAAAAAGGAAATAAATTATAATTTCATTAAAAC
ACACACAAAATTATAAGAATGCTAATTAATTAGTACTATTTTGTTTCCAATTTTATCTAC
ATGTACAGCGGCTCCATGCAGGAAGTTAATTTATTCGTTGATACTGAGATTACATGGTAG
TTATTACTCCCTCTGTTTCTAAATATAAACCATTTAAGAGATTTCAACATAAACTACATA
CGGATGTATATAAATGTATTTTAGAATGCACTCATTTTGTTCCGTATGTAGTTCATCTTA
AGAATCTCAAAGAGGTTTTATATTTAGAAACAGAGGAAGTAGTTGTTAACTATTTCCGAG
TATGCCGTAAAAACGTTTTTTTACCACTTTAACTGTGCTGAATATCTTGAGATCTTTAGC
ACTAAATAAAAATCTGTAGAAATCTCAGTCATTTAAAAATTTACAACATGAGAATCACCA
CAAAGATTCATGTGAAATGTGTGGAGGTAACATATTTTGTTCCTGTTCCAGCACCTACAA
AATCATCATAGGTGGTGAGTGCTCCTTCTTATGCGTCGATGGTAATCTTGGGCGTGACCA
CCGGGAGCACACCTTATGGAGTTGGTATCAAATGTGTTCATAGGGCTGCCGTTACTATGA
TTGGAGTATGAGGAGAGTTAGGTTTTTGAGTCGAGCACGTGTAAACAGGGTGAGCCAAAA
TAGAGTAGAAGTAGTTGTTAGACACAATATCGTGATGTGATCGGAACAAGCGTCCATTGT
AGGGGTGAATGGACTGGCCATAGCACAATAGTCAAGAACTCGAGACGCATCTGATGATCT
CAATGGGTTTGTCCTCGAATACCATTTTGATTTACTACATTGTGAGAAGCACACATAGTC
ATGCCTCTTGGATGTAGGCGTGACCATCGAACCTTGTTAATAAATATCGTCTCCATCTAC
TTTCCGGAACGATCTATTCACTCAAAATCCAACAAGTGACATCAGAGTGAGGTTACATAT
TGAATCAAATCATAGTGTGAATAATCTACATGATGGTGATAGGGCGGGGTCTTTTTTGTA
GAAAAACGTACACCTTTGGGAGATGCACCAAGAAGATTCAGGTGAGGTTGCATCGACAAC
ATTTTTGTGGTTGTTCCAGCCCTGGTGGTGAGTGCTCCTTGACGCGCACCGATTTGTGAC
CTTGCGGCGTGGCACAAAGGTTGGAATTGGTGTCAAATATGTGTGTAGCTTTGTTGTTAG
ACTTGGATATGTAGGTGATTAAGGGTTTGCGTCGATCACGTGTAAGTATATCACACACTT
GATATATAAAGATCGTTATGGGGTAGCCAAAAGAAACGGGCAAGCTAGACACAAGATCAT
GAAGGAACAATCTAAACGCCCGTGGCAGGTGTGGCTGGTCCCGCTTGTGGTTCAATAGTC
GTGATAATCATGTCCCATGCATTCCCTCTACTTTTATTAACTTTGCATATTAGATTTATC
TAAAGCCAAACTTTATAAACTTTAAACAGGTTTATAGAAAAATATATTAATATATACACC
ACCAAATCATTATCATTGGATCCACCATTAAATATATTTTCACATCATATTGATATGCTA
TTGTAAATGTTCAAATTATTTTCTACAAACCTAATCAAACTTTAGAAAATTTGATTTCAA
TCAAAGCTAATGTGCACAATAAATAAAAATGGAGGAAGTATGTAGGAGTTGATCGACGGA
CACGGCTGTTCTGATCCCGAGCTCATGTGAGCTCAGGTGACAAGGTAAAATCAAAAGAAA
ATGAAAAAAAAGTCCAAAAGTAATTGTGTGAAACATTGACAAATGTTTTAATAGCACAAC
ACCAGATGACATTCGTACAAAATCTGGCAAAAAAAAATAAATAGATGCTCCAAATGCTGC
CAGGATTTTCACGAATGTAATCTGGTGTTGAAATTTTTCAGGCTATTAAAACTGTTGCGA
TTGTTTCACAAAAAAAAATGACTTTTTTTATTTTGTTTTTATTTTACTGTTCATCCGATC
TCATATGAGCTCGTGATCGAGGTCAGATCAGAATAACATGTTAATCAAATAGCATCTTCT
CGTGTACCTTCGCCAACAATTTAATCACATAAATTCTAACACCCTCTTCAGCTAATGTGA
TGTGGGGGAGGGGATGTTTTGTGTCTCTCCGGTGTGGAATGTCAATCAAAGCATGTGACC
AGTTTGTCCCTGGAACCGCGGTAAGATACGTTGATAGCACTATATGAGTGTCCTCGATCT
TTTTACGAGATACCGATCATATGAGGTTGTCAAGCATTTCCACCTGTTCTGCTTGTGTGC
ATTGTGGTATTCCTCCTTCGAGAAGGTCAGTGGAACGACATCAGTGGATACCACCATAGA
ATTACAGATCACACCCTTTCGAGTTTTGACAAATCTCAAAAGGCTGCATGCACCTACCAC
ACGTTCGTACCAGTAGGTAGGAAGGTGTTCAAAAATCAAAAAGTGACATGCCCGGTTGGT
GCCGATGGTTTACCGGTTTGCGGGCAACCCCGTGCCCCTATTACACGAAATACTTAATTC
CCATGGCCCCGTGAACAGAGATTAGGCCGAAAGTAGTTTCTAATCATCGGCATTGCAGTA
AAGCTATACGTACACAAGTTTACAGGAGTTTTACACACATGTGAATTTTGATTAAAGGTT
AAGAGGAAAGACCCCATCCCGTTTAAAAACCAGGAGGGAAAGATTAATCAGAAAGAAAGA
ATCTTAATCAGCGTGTAACCGTGTGTAACTCTTTGTATGTTTAATATTTTTGATAACATT
ATTGCATTGTTATCGCCATGTTCCTTTGTTTGCTGATGGTGTTAAATCGTTTCAACCTTA
AGCCCCTGTAGACATTCTAATGAGTGACCGAGAGAGAGTACTCTACAATGCTCACTCGCA
TATGGACCTCGAAAGCAGGGTGACGAGGTAAAAATGAAGCAGTAAGAACTGGACGATGGA
CGTGCGTGCGTGTTGGGTACGTACCTGGCCGATGCGGTACCAGAGGTGCGGGTTGAAGGA
GGCGGCGGTGAGGATGACCTGCGGGAA