Contig Data
morexGenes
Links



Map Locations of contig_46593 (5951 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46593

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62465 1 973 bp MLOC_62465.1 Available Available None
MLOC_62467 1 1361 bp AK252612.1 Not available Available None
MLOC_62466 2 1831 bp AK252612.1 Available Available None





CDS Structure of MLOC_62465






CDS Structure of MLOC_62467






CDS Structure of MLOC_62466






Contig Sequence (5951 bp)

>contig_46593 5951 assembly3_WGSMorex_rbca.fasta
AAAGACATCTAGTGTGCCAAGCGATTTACATGTACATACGTGCAACTTTTCCAGTGCCGT
GCAGGAGTTCAGTTGTAGTGATTCCAAATTTGGGCAGTACCATAAATCCAATTCCGTCAG
TGCTGGCGCATGTTGCAGAATCAGAGATAGCCACTCCCACGCTATTCCGCATGACCCAAT
ACCTAGATATTTGAGTGATGGGAGGGCATGCTCTAATGGAGCATCGAAACCGGAAAGCCC
GGGACAGTACGTTATTTTCAGTGTCTTTAAGGATTCAAGCTGACTTAATCCTTTGAGTGA
AATAGACGTTAGTTTTCGGCAACCACATATTATCAACTGTGTCAGGAATCTTAGATTATG
GAATGCCAAAACATTTCCATCTAACACGAACAGCTCATCAGATAACTTGTCAAAAGGAAG
ATCATAATCATAATCATAGTCATCAAAATCTTCGCCGATGGTTAAACTTCCGCTGGACGA
TACCTCTATTCTTGGAAATTTCGGGACTCTGCTCATGGAAATACGACAAGCAGTACTTGA
GGATGGTAAAGGGTGTGGTACCACCAAAATATGACAGTTCTTTAGAGTAAGTTCACAAAG
ACGTGGCAACCATGAATTCTGCTCAATTTTGAATTTATGGCCGTTCCCGAACAGATCAAA
CACCTTCAGTGCAGGGCAGTTCTGAATTATAAGAGCCCTTAAACAAGAGTTCAAGTCATT
CAAGGAAATGCAGGAGCATCTCTCCAACTTTGGCATTTTAATTAACACCAACTCCTCCAA
CGAAGGAATGGATACTTCTTTTACTTTTGGCATGTTGCTCAAGCTTAAGTTTGCAAGAAA
CGGAAGCCCTTCAAGAGATGGAAGTATCTGCCATTCTCCACAGTTTTCTAAATGAAGCGT
CTGTAAAGAGGTAACTGGGGCATTGCTGGCAAGCCAAGATGGAGAGGTAGCACCAGTGTA
CTCAGATATCCGAAGATGCTTTAGATTTTTGTATGGTCTAAGACCCTCAAGAACCTCTGC
TGGCGAGTGCTCCTCCATTTCTGTACTGGTACAAGCTTCAGGAATCTCGTGCACCTGCGT
TAGCAAGCGCTCCTCCATTTCCACACCGCTGCTAGAACTTTCAGGACCCACATGCACCTC
TGTTAGCAAACACTCTATTTCTATGATGGTAGAAGGTTCATAGGGCATGCTACTGAGATA
TTCATCACTGTCATCCAAGTCATATTCAACATATGACATGATGTCTTTCCAGGACAAGTA
CAGCTTTTCTAAGTGCCATTTGTCTTGCAGTCCAGCACGGTGAGCCTCCTCCCGAGTTTT
AACATTTTGAAGTTGGGAAATCCCAAGTTGGACAAGATCGTTCATGGATTGAAGTTCTAT
AATCTGAAAGCCATCAGAATCTTGTATGCTGAAATTGCTTAGCTTCTGAAGTGAGGTCAA
TGTGCCAATTCTAGAAATGGGAGCTGCAACAAGATGCCTTAAGCTGACAAGATTATTCAT
GCCATAAGGTACATTAAGATGAGTGTTTGACCCGACATCTAATACTTGAAGGTGGCAAAA
ATTTCTGAAAACCTGAGGCAAATCTCCCTGCACCTCATTGACTGTAAGTGTTAGATAGCG
AAGATGAGTAGGATTTATAGAGCTGCACGCGAGGGAATTAAAATCTGCAAATGTAGCAGA
TATTTGCAGAAGACGTATATCACGTGCCTTCTGGAATATGTCTTTGAAGGATTGGAAGAA
GGAACAGTCATATTGCCCAATTAACAGCAATGTCCTCAGTTTTCTCACGGATGTAACTGC
ATTTCTCAAATCATCTTCAAACTTGCTGGTACAAGACATGTTCCTATGCTGATCTTTCCT
GTATACAACCGCCAAATGTTGTACAGTGGGCAACATGTCATTACATTGCAGACCATCAAC
AATTCCACACTCGGCTCTAGAAACCATCCTTGCAAAATCATGCATTAGACCAGACACAAC
ATATGAATTTTGACTGCCTAAAGGGGAGTCTTTGCTTTCAACTTGCTGGAAGTATCCCAG
GTTCACCAAATCAGCCAGATAGTCCATTCCTATATCCTCTAACCTCTTACTTGAATGAGT
ACGTGTGACAAATCCTTGTGAAATCCATATGTGGACCAACTCTTCAGCAAGAAACTCATC
ATAGTCGGAGAATATAGAACAATACGAGAAGCATTAGTGTAGATGGTACGGCAACTGATC
ATAGCTAAGCTTCAAAGAAGACATGATGCGTCCACTACGTCCCAGCAACTTCCCATCTTC
GTCCTTCAGAATTTTATTCCAATGACCAACAGTAAGATCAACTCTCAACAGTTCCCCTGC
AGTTACTGCTGCTAATGGGTTGCCTTTTAGCTTGCTTGCTATTTTCCATCCAATGTTTGT
TAGATTTCCATGCCCTTCATAGTTCTCATCACGAAAGGCTCGTGCTTTGAACAAAGACCA
CAAATCCTCATCTTTCAGAGCACCTAACACAACTGGCTCAGTTGTTCCTATCCTTTTTGC
AACAGAGAGATATCTAGTCGTCACAAGGATCACATTGCCTTTTACATTGTCTGACTTGAA
AGGAGCCAGTATTACGTCCATTCTGCCATCGTTCATGTCATCCCATACATCATCTAATAT
CAGTAGAACCCTCTTTGATTCAATATGGGTTTTCAAGACCTGCTGAAGTTTGTCAAGGCT
GCATAAACCTTCGTGCTTTTCTGGAGGGACAATATCTAACATCTCTCTTGTGATTATCAT
TTCATCCAAGCTGTTAGACACCCAAACCCATATGCATTGGTCAAATTGGTTTTGCATATT
TGGGTCATTATATACAAATTGTGCGAGAGCTGTCTTCCCTGTACCTCCAATGCCTACAAT
GGGCAGAACAGTTACACTGTCAGATTTGCCAGCTGTCATCCGGTTTATGATGGAGTCCTT
CTCTTCATCTCTCCCATACACTTTGCCTTGAAGAAGACTTGATGTTCTTCGGCTTGGATC
TGAGGCTGTACTTTGATGGTGACTTGAACTTGCACCAGAGTCAAACCCAAGCATGTTTAT
ATTCATTGTCACATCCTCTCGGATGTCATGCAACTGACGTGTTATTTCTCGCATCCTGCT
GGAAAATTCGTCCTTATTCCAAGGGTGAGCAGTAGCTGCGGTAGTTTGTATTGGTTCTTG
ATTCGTTCCCATCATTGGTGTGCTGGATGAATTAAAGACAGCAACGGGAGTGGCATTTTG
AGCAGCAGCATCTATGCTGTGAAAAGAAGAAAAAATGGAGGATCGGCTATTACAACGACG
AGGTATTGTCACGCAGATGCATGTAAACGCTTTAAAAGAATATAAGACGAGATGCAGAAT
AAGATGTGCGTCGTGTTTTTTCAGTTTCAAATAGTACCTTGAATGACTTGGCTGCTGGGG
ACGTGCTTCTCGCGTATTCTTACAGTAGGCACTATTGACATGAGTTGTCAAGACTCTTGG
TCCTTGTGCACCTTTGTATTGAACTCTCTTTTTACAGTGTCTACATTCTGCCTGCACGGT
CTTCCCATTACCATCTTTTATGTCGACAAAATCATCCCATGCCTTGGACCGTTTTTTGCC
ACGACTGCTTGTCCCCGGAATATTATCATCGCCCCTCAATGTTCCATGATCTACTTGTGC
TGCTTCATGCATGCCATCAGGCTCCTGCAAAGCAACTGCGCCAAAAGAAGAGGGCTGTTA
TTAGCATGGTCCTGCAAGACCCGAAAACATTTTGCCGAGGTTGACTGGAGGTCGTTCTGT
GGCTAACCTGGGGTAGTCATTGTGGTATTCTGGGTAACACCGTCGGAGGCATAGTGATTG
TACGCGTCGTTGGAGGATGAAGGCAGCGCGTGTTGGCCTGTTGGGAGATGGATACCGTGT
TGGTGACTAAAACAGAGCTAATTTTGATGCTTGATGTGATCAACCATTCAAAAGTTTGTG
CTCGACGGCTAACCAGAAAATTTGGAATTCTAACTGCCGCGGATCTAATTTTTGCAGGAA
TTAAAATCGATTTCTAAGATTCAAATTCAATACCTCCTTCGACTTGCTGCCGGAGCCTCC
AGTAGTCTAGCTCGTCGACCAGGTCGTCGGCGTCGTACAGAAACCTTTTGAGGTCCGCGA
GAGATTTATCCAGCCGCGCGCTCCGGCGGGCCATCCCCTTTGCATCGGAAGCCAGCGCCT
GGAGTACCTCGAGCTCGGACCTGAGGTTCTCGATGAGACCCTGAAGCCCGGCTTGGCGGA
TCCATGAATCCAGCTCGCGGATCCCGAGGGTGGCGAGGATGGTCTGCAGCAGCCACAGAA
TCGCCGGCACAAGGTAAGCGTCCTCCATGGCTTCAGCTGTTTGTGAGCCACTCAATGATC
ACGAAGGGGTGTGGACTACGGAGAGGACACGCCGTAAAAGAAAGAAGAGTCTGTAGTTCA
CTGGAAACACAAAACCACACCTACTTTGACGTCCATGACGTATCCCCACCATTCATTTCA
TCAAGATTGGTGCAGCTTTTTTCAGTTCGCTTCTTGAAGCCTCTGCCAGTTTGCAAAGGT
CGCCTCTAATTCAGCAGATCCTCAAGTATATATGTACATTTCTTCAATCCATTCACAATC
CTCTATATGAAGAAGAAAATGTTTGCATATCTTACATTACCATATCTTATGAAGCAAATC
ATGTGTTTGATAATGTCATGTAGTATACGCAAACTCATATAAGGAAGAACACCATTTATG
AAGCAAATTTCGTTGCCACCTACCATGAAGTAAATTTCTATCCAACTAGCAACATGAACA
TTGTACCAGATCAAATACCATCAACATGATTTCCTTATACCCCTCACTTTCTAAATAATT
GTAGTTAGGGAGAACTAGTCTAGTTCTACCCAACTATAATTATTTACGAACGAAGCGAGT
AGTACACTGATCCTCTTTTTATATTTTTGTCATCAATTTCATCACATAAAAAACAATGGA
TCGTGCATAGAAAAACCTATTAATGATAAAGCAACAAAGAAATGCGAATCTGAAAAAATA
AAGTCCCCACAAGCAAAGGGGAGGGTGGATGAAAATGTATCTGGACAGAGAAAATCCCCA
TAAGCAAAAGGGGAGGTGGCATAAAACTGGATCTGAACACAGGAGAATGGAAGCATCCAA
GGACAAACAGAAACCATGTAATCATTCTAAGGTCAATTTCTTGGAGCATTATAAAACGTC
ATTGGCATCCATGGACTCTTCTATGCAAATGCAACAACATCTCAAGCAAACAGATCGAGT
TGCACATGCACTTCAAGAAAATCTCAAGAAACAAATCCGAGCAGAAAATAATTCAACATG
AAAAAAGAATTGTTCATTGTGAAAAATCAAATATAAACCTAGCAGATCTCGCTCGTTGCC
GCTAGCTCGCATCGGGAGGCTGGATCCATCTGTAGCCGTAGCCGGTAGGGAGTGGCCGGC
GGAAGTGGAGGGTAAAATCGATAAATTTGACTCTTCGGCGCAAAAAAATTACAAACTGGA
CTGCGTTTGAATTTTTCTCGCTCAGCTAACCGTTTTGTATGGCGTCCGATACTTAGACAC
CACGCTGACGTCCGACCCCACCCACCCAGCAGTGTGACACCTAAGCTGCAGGGGTTACAC
TTATGATAATGTGACGCCGAGCGTTTAGGCACCACACTGCCACTTAAATTTGTGGTCGCG
GCTGCTCCCGTCTCTGCCTCCGTCGCTAGGTGGGCTAAGGGGCTGCTCAAGATGGACCTC
AGCGACAAGCCAATAACCGCCTCGACGGCCGCATCCTGCCGGAGCTCTCCGGGCTCGAGA
GCCTCACGTTGCTCGACCTCCGGAACAACAGCCTCACCGGTGGCCTGCCGGAGTTCGTAA
AGGGGATGCAGACGCTCCAAGACCTGCTGCTCTCAAGCAACCCGCTGCTGGGAGGCACCT
TGATGCAGCAC