morexGenes - Barley RNA-seq Database

Contig contig_46590
Source Contig contig_46590
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46590 (7518 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_46590

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62462	5	1423 bp	AK374713	Available	Available	None
MLOC_62461	1	154 bp	None	Available	Available	None
CDS Structure of MLOC_62462

CDS Structure of MLOC_62461

Contig Sequence (7518 bp)

>contig_46590 7518 assembly3_WGSMorex_rbca.fasta
GCAAAGAACTAGATTCCAGTAGTGGTAAGGGGAAGCAGAGCAACGCCTGCGATAAACCGA
TGCCTTACCGTTGCTAGAGGGACGACGACAACGACATAGACGATGATGGCGGTGCGGACA
TGAGATACTCGTCCTATACAAGCTTTAGTTTTTTCATTCGTATATGTAAACTTTGTCCGA
ACATGAATGAAATTCGGCGTTATTGCTGAACTTTGTTGTTTAAATCTGGTTTGTATTATG
TGCAAATAGCTTTGGATGGCCTGATGTGATGTCCCATTCGTTGGACCACAAAGTTTTTCG
AAACCCACGCTGCAACATGCTCTTCTTTTCTCTTTTTCAACTCAACGTAAATATTATATT
TAAATCATTATAGCTTACATCACTATAGTAAAGTTCTTTTAAAGCCAATGCTGCAGCCTC
CTCTTCTTCTCCCTCTTACAATTCAGCACAGATATTATATTAAAATTATTGCAGCTTACA
TCACCATACTGAAGGTTTTTAAGCCCATGGTCCAACCTGCTCCTCTTCTCCCTCTTCTAA
TTCAGCATAAATATTATATTTAAATCATTATAGGTTACATCACCATATTGTACTTGTTCT
CGGTTTGTACCAAAAACATACCCCCTTTGTAAATATAAGTTTCTAAATATACTTCACCCA
TTCTTAAATATAAGTTCTTTTAGAGATATATATCGGTATGTAGTTTATGTTGAAATTTTT
AGAAAGGCTTATATTTAGAAATGGAGGGAGTAGTGATCTAGAAAGTCTTATATTACCGTA
CCGAGATTTCAATTTTGTAAAAGAACATTTCGTTTTAAAACATCATATATCAGGGTTAAG
ATGACACGTGTATCTTTGCGTCCACATAGTTAGGAAATATTCCTAGTTTACCATAGAAAA
TTATATTATGAGAGGCAATTTTCTATACATGGTGACAGCTACACACCCTTTGGCATACGT
GCCTTTTTGATATATGAGCTATCGGGTTTCTTATGGCATTGGCACAAATGCATTTTTATT
GTATAGAAATAACTTTTTTCTCACTTCTCCTTGTCTTTTCATTATTTTTTGATATAGGTG
CCTTTGCATTGTGTGGAAAGGGCCTTTTCTCACTTCTCTCGGTCTTTTCGCTTCCTATTT
TGGCACACTTGCCTTTTTTCTCACCTGGTTGGTCCAAAGTCATGATATTTTGCATTATGA
AATTATTTTTCATGGTACCAAATAGTTTATCACAATAATTAGAGATAAAAATTGGGGCCA
TGGGTATTAAATTATTTCTGATTATCTTATTAAGCTCTACACGTGCTAACTATCATGGAG
AAACATGCATGCCAAGTTGCCAACATTACACCATCGAACAGAACACTTTATCCAAATAGA
ATATGATCGCCCGGACTAGAGTATGCAGCCGACCAACTTGATTGCTCTTTCATTTACTCA
CATAGTGCTATATATACTGCTAAGAACAAACATGCTCATATATAACAGCACCGTGGCACT
GAGGAAATATAGTGGTGATCCGTATGATTCGCTCAGGCAGACAAGAAAATAGTTGGAAGA
ATCTCAAGACTTGTAAACTAAATATTTTTCGTAGATTACTCTGCAGTTTCTGTATGTAGC
GTACTCTGAGATCTTGATGTTGCAGCTCATATATGTGTAGACTACAGCTTAGCAAGGGTC
TGGCTGTATGCTGGATCCATGCAGACAACCACCTGAACAAGTCCCAAATTAAGGGGGGAG
GGGGAATGTAAGGTGAAATACAACTGGCAAGAAAGGCATTCCTCATGTTATGGGTTTATG
GCAACGGTGGTACCTTGCCAATGCTCCTGCCAGAGTGGAGATGTTCTACTGCGTCCGCCA
CAGAAGCAACACCTACGAATTTCTTGGGGTCAAGGGAAACCTGTTGCATGCCGTGCGTGA
GCAGCAAACTAGGTTAGAAGAAGAAGAAAACGAGTATGGTGAAAATGCAGGGGCGATATC
CAATGTTAATTTATACTCCAGTTAAGAACTGTTGGAAAGTAAGCATCCACATTCTGGTTA
AAAGTAGGTGACATGGGGATTGGAACGATGTGTATGCACCTTTTTCATTGCTTAACATAA
TATTACTGGGAAACATATTTATTTATTTAACAGCATTGCGTTGCGTGGCTTGCTGCGGTT
TCTACTCTGTTACCAAATGCAGGTCATACTTGAATTATGTACGGACCGAGAGATATCTGT
GTGGTTACTGACATTTGGCGGACTGTAGTCACAAACAGAGAACACATACCTTTAACTTCC
CAGACGCATGCAGGTCAAAAAGCTTGTCAAGGTGTTTTTGCCACAGGTCGGCATACTGAA
TCAGGAAAAATCCAGCCTGAAATCGTAATGGAAATTAAGAACTCATAGTTTTGAGTACGC
TACCCAATAACTACATGTTGGATGCAGATTTCTATATGTATGGCTCGATGTCTGCCCCAT
ATAGTTTGTGACTACAAATGTAATCTTGAGCAGGTGGGAGTGGCATACAGTCACAGAAAG
TCGAGTAAGGTTGCTGCATCTGTTGCTGTGCTAACCAGAAAAGCACTAACGAACTCATAT
TATCTTGGGATCAAGCGTGTCCAGTGGAAAACAATATTTTTACCAGTATTGTGGTTCATT
CAGTTTAACTTCAGTAAGATTGCACTTGCCTGATTCCCTCATGACCAATTATTAAGCAGA
AAATATATTGCAGTGCATGCAAACTAAGAAGTTCCAGTGTTCTACTGCATACACATACCA
CAGTTTGGCTCTTTCCAAGAATCTTCTCACACAACCCATAGTAATTCCGTGGCATCCATC
CATCCTTTCCTTGATACTGAAAACATCAGTTATTCTTTAGCACACTAGTATCAATATGGT
ACGCGGAAAAACTGCAAGTTCCTATCAAAACGAAGTATAAGGAGAACAAGGATAATTAAC
AACGTTATACCAGGTATGTATCAACATAATCATAATAGATCAACAAGTTCCCAACTATTA
ATGCACATGCATAACATATTGATTTCAGCATTCAGTTTGCTGTGGCGCTTCAGCTACTTC
ACTAATGAGTTTACGCAAACTAGCTCCTCGACTGCTCATTCTTTACGAAATCTATGAAAT
ATTCTCTTTGGTGAACAAAAACAACAACAACAACAACAACAACAACAACAAAGCCTTTTA
GTCCCAAACAAGTTTGGGTAGGCAAATATTATCTTTGGTGAAGCATGGAACAAACTAAAC
ATAACCTATCTCCCCCTCTTAATTTGGCATTCAGAGTGTTAAATAGGTAACTACAGGTTC
AGAGAATGCCAAAAATATAGATACCTGAGAGATCATACCAATTACAATGAGGCGTCCACG
AACAGCAAGTGCATTCAAACACAAGTCAAACATTTCAGCGCCTACAGATTCATACACTAT
ATCTGCACCTCTTGGAAACTCCTTTTTCAGAACCTGGAACGAAACACTCATTAGTTCCTA
TTTTTTTTAGTCAGGAAACAATTGCTAAAATTACCGAGAAGAATAAATAAGGGATAGAGT
AGTAAATTATACTTATGACCTAAAACATCGTATATTTTTTACAGAGGGAGTAAGTTTAAA
CTAATCATTTCGGAGACACTACTACTATAGTAAACATTCTCCAGCGAGTAGATCATACAT
GTAATTCAAGCATTCCCAACACACATTCTGCATTATAAGTAGAGGTAGGACACAGCCTCG
CAATAGGAGGATATAATGAACTAGACAATATATTTTGAACATACTGTCAAAGTACAACGA
TACAAAAAGAAGATGCTACCAATCATGAGCACAACACACAACCACACATGACAGCAAAAT
TGCATCATTTGCATGCAAAGCGGTAGAAGTATGAAAACTAGAGCTGGAAGATGGCATACA
TCTTTTATCTTTTCATGTTGGTAGTCGATGACTCGATCAACCCCTAGTGAAGCCAGAAGT
GCAGCTTTATTCCCGCCACCACATGTGGCAATAACCTTGTTGCCAGCTAGTTTAGCGAGC
TAGTGAAGTGACAGAGAAAATATCAGAACATACAGACATGGATAAGGGTAACAAAGCATA
TAGCACATAGAGCAAAAAATTGCCCATGTCCTCGAAACACCGTATTCAATGCAAGAAAAG
TACATGCAAGGGGCCAAAACATGCTCCAGTGGCAGTGCTAGCTAATCATGAAAGACAAAT
TATATGTTTTCCGAGTGTATGAAATAGTTATCTTGTGCAAGTTCTGAAAGGGAAATGTGG
ATAAAACATTACTATCTTGTTTTAACGCCTAGATAACTATGAAGTAGACGAGCAACTGAG
TATTGCATAAAAAAAGAGTACAACGATGGCATAAAATAAAAAAAGCCATCAACTGACCTG
AACAGCAAACTGTCCTGTTCCACCAGCAGCAGCTGTAACTAAAACAACTTGTCCGGATGT
CATTTGACCTGACTAAAGGGTAACAGAAAACAACCCAGACCAGACCAGGAGGGAAGTTAT
ATTCCAGAAGTGAACTTAGGTTCTGGTGATCAAATAAGAGCTAAAAACACAGATGGTGTA
TGATAAAAGTGGTAACTGCATAGCAAGATAACCTTTTCAAGAGAAATTGAAGCAGTCAGT
CCTGATGTTAGCATAGCAACTACTTCAGGGTCTGGTCTTGGCACCAGAAGAAGATGTTTG
GCAGGAACCTTTTAGCAGGAAAATTTGAAGACAGAGGTAAGTATATGCAAAAGTACATAT
TCAAAAGGTCAGAAATGATTTCATTCAAAAGAGCGCACAGATTAGGTGGTAATTTCATCT
GGAACAAAAATACATAGACTGCAGTACCACTGTAAATTCGGCATAGCTCCCAAAGGTCAT
AAGGGCCACAGCAGTGCCAACTTTGATATGTCTCACCGAATCTCCAACAGAAGCAACAAT
TCCCACAGCCTGCGTATATTGGTTTTTATGATAAGATACATTAAATTCTCCTGTAAGAAT
GTAAGGACTAATGCAGCAACACCATATCAAATCATTAGAGGTGCAAGCTGGTTTGATGGA
GGCATGTCGCATAGGCATGCCAATGTTCTCGGTCTACTCTACACCAGGAGTGACTGTTTC
CCACCTAGCCGATCAAGAGTGAGCACATTATCCTTGCCCTTCGGGGTCAGCCATAGTTAT
AGCCATCATGCAGTTGGATGTCATAGCAACAGGCTGATAACTCGGCTTTCTTAGAAAGTT
CTTTTCATGCCGGCACAGTTAAACTATCAGAGTCATTACAGCACTCAGGGGAAATGATAA
GAATGGTGTACTTTTTTTCCCGGAACATCTTCCTACATTGAAAATGCTTTAAAGTTTAAA
ATGGACATATGGGGCCATCAGTTACCTCAAAACCAGCATCAAATGGAAGGTGTGCAGAAG
CTTCTTTAGCATTACCACTGAAATAACGGCCAGAAGTGAAGTTCACCTGAAACAAATCAT
TACAATTTCTGACAGTTCGGAAATAGTAAATCAAAAACAGAAGCAATTGAAAACATAAAT
GAAAGGACTTACATCACTAGCATTTACACCAGCGTATATTATTTTAACAAGAGCACTATG
TGGTTCCATGGGCAATCTCAGCCGCACACGATCAATTCTTGTAGCATTGCGGAAATTATG
ACTGAGCGTGTGAACCGTTCTGCAGAACCATCATGAAAAAACAGACACTATTAGTAGTAG
ACACCATTTTCAATATCCATACAAACATTCTACCATGGCAAGAACTGGCAGGGCTGTGCT
TTGACGAAGTTAACCTATCATCTATAAGATAACTTTCAGACCAATGGGGTGTTACACATG
TAAAAGGAGACATGCTACTCTAATCCCCCCCCCCCCCAACAGGCGCACACACACACACAA
AACTGGTGGTGGATTAAGAACATTGTGTTTGGAGAGGTAGAAGTGTTGTGCTCTAGTCTG
AGGAACTGAAGTTCGGAAGGCAAATGTTGAAGTGCATCAATTAATCCTGCACACAAGACC
ACATGAAGCGCATTGCCCACCTTTCTCCATTAACTTCCGCTTTTGGGTGAACTGACCATT
ACATGCAACTTTACATGACATCAGATCTGGATTTTTTTCCGCACGCACAACCCGTGCTCT
CCTCTCATCCAGACTGGTTTCAGTTTCTTCTCTCTTCCTCTGATCAATTTCTTCCAAGTC
GGGTTTTGAACTGAACTACTGAAGACGTCTTGGCTCTACCATGTGAGAAAATATGCAACT
TGTATTTCTATGAGGACATAAGCCGAGTTTATGCACGTCCATGTGTGGTAAATATACAGA
ACCCCCCTTCTAAAATGGGCATATTACACAGCTAAATGTAAAGTATTATACAGCTAACAA
TTTGGAGTTGTAGGAAGCGATGCATAATAAAGATTTCCGAAATCGCATGCATATCATGTC
CAAGAAATGGACTCACATATTCTACTATAGATGTTAAGTATGTTAAGTGCCCAAGCTTTT
TTAAGAATGCAAAATGGCAGATAGATTATTCAGTAAAGAGACAGCGCGTCTGATAAAATG
TAACATCCTGAATTTTTTTGGGAGTTATTTAAAAAAAAAAAAAAAAAAACTAAGGATGTT
GCAACATAATCTTATTGTATTTTGTTTTGGAGTTGCTCAAATTAATACCAAGTCGTTTGA
AATTAATTTAACATATGACAGGAGAAAACTAATTTCCATAATATCCCAAGTCGATTTAGT
CATTCGTAGTATTTTATTTGAGTTCATCTTGTCTATCTTTCTTTCATGGATTTTTCCAAA
GTCAACTGATTGTTTTCCTGTTATTTCCAGTGTAATAGAAATTTATTCTGAAAATCAATG
CAACTGTTTGTCTTGACCTCCTCTATAAAAGCCACATACTCTCATTCTCCAATTCCTTCC
ACACCACCCACAATCTTCCCCACAATGGAGCCACATCTACACCTTATTTTCCCTACCGTC
GCCGCTGGTGAGCACTCTGGCCCAATTCCTTCCACCAGCCGAACCACCTCACCATATCCC
ACCTCCTAGACATCTTCCTCCGGCCGTTTGTCGTCGTTGGGCGTGCGCACGACGTGGCCA
TGTTACCACCACTTGGGACCGATGTTGCCATCATCCGAAGACTCATCCGTCGACTCCATC
CGCGTCATGGAGTTTTCCTCATCGCAAGGAGCAACGCTCACCATCCTTATATCGTCGGAG
TTTGACAACAATGACACACCGGAGCTCGCCTGCATTAACACAACGTTTCCATCTCCGACG
AGTGCCGTTGATATAAACCCAAGCCTAAACCCATAGGGCAATTTTTGATGATCCTAGGAA
CGTCTAGGAGTAGATGGTTATTATTTTTCATCGAGTAAGATTTGTTTTGCGGACGATGTG
GTGCTAGTCGATGATAGTCGGACAGGGTCAACAAGAAGTTGGAGTTATGGAGGCAAACCT
TGGAATCAAAAGGTTTTAGACTTAGTAGGACTAAGACCGAGTACATGAGGTGCGCTTTCA
GTACTACTAAGCACGAGG