Map Locations of contig_46584 (7823 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_46584

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62449 2 1129 bp AK365200 Available Available None





CDS Structure of MLOC_62449






Contig Sequence (7823 bp)

>contig_46584 7823 assembly3_WGSMorex_rbca.fasta
ATGAAGGAGAGGAGGAGCTGCGCCCCACCGAACATGAGCATGTAGTAGCTTCCGTCGAAG
CTGCAGGGCGCGTCGTGCCCGTGCGCGTGGTAGCAGTTGGCCTTCAGAATCGCCCTGCAG
CATGGAAAACGATCGGCTTAAAACAGCGGCACGTACTACGCGAACACGAAAAGGAAGGCA
AGCTATGTAGTAATTCTACTCCAAGTCACATGATTCTTTCTTGCTCGATGGATGGTGCAA
CTAATGCAACTGCTGGCCGGCGGCGACTACCTGATGCTAGTGGCGGTGGTGATGGTGTAC
GCGACGCCGCAGCCGTACAGGCTCAGGTACTGCAGCGAGCCGCAAGCCCAGGTCTGCTTC
TTGCCTGAGTAGGTTGCCACAGTGATGCACCCAGATCAAATCACAAAATCACAGTCGTCA
CAGCACAGGCGAGTAGCTAGTAGCACAGGCTCATGGAGCGGAACAGGCTTGGCATGCTCA
ACTGCTGATGCTAGAGTATACTAGTAGTACCGAGGTAGACGCGGACGGCGTCCATGTAAG
AGCGGTTCCTGGGCCCCTTCTCAGCGTCCTGGCAGCGGTAGCAGTCGGAGAGGAGGGAGG
CGGAGACGTAGGTGACGACGGCGAAGCAGAGCATGCACACCGGCCCGGCCACCCATCCCA
GCTGCGCCACGCCCCAGGCCAGCGACAGCACCCCGGACCCGATCACCGCCGTGATGATGT
GCGCCGCGCACGTCCACTCGGTCCCTGCGGCAGCAGCACGACGGGCCGGCAGCAGCAGCA
GCGTAAGGAAGCGAAGAAGCAACCGCGCATCGCGTTCGCGTGCTTAGGAGGAGGGGTGCC
GCCATCACCATGCATGCATACCGGTCCGGGGCGGGCTCCCGTCGTCGTCGCACCGGCCGT
CGATCACCTGGAGGGAGTGCTGCACCGCCATTGCTCCGGCGCCGCGCAGAAGCTCACACT
GGGCCAAGATTCGCGCCGCTTTCACGGGAAGAGACTGGGAGAATTAATGGGGGGTTCAGC
CAAGAACCGCGGAGCTATACGGCGGCACACGATCGACCGGACACCGGAGCGAGCATGTAG
CTAGCGGCTGTGGGTGTGTGGGTCCCGCGGGGACGTAGCGGGTAGGTTGCTCCTTTCCCA
ATCGGTTTTGACTGTCCGGGTTAGTGGCGTGCGGGTGGACAAGGAGCGAGCGGAGGCGAG
ACTCGAGAGACACCATCGCCATGCCGGTGAACCTCCGCCGACCAGTGCGCTCGTGAATCT
TTGGTGCCGTTGCCATCGCGATTTTGTCCGCTTCTTTTGGACGCGGATCCTGTAACCTTT
TCGCGAGAGTGAAAACCGCGGCGGCGCCCCCACCCTTGCCCGAATTACTGAAGCTGGATC
ACTCGAATATCTGTGAATCTTGATTTTCTAAAAATATATGTGAATCTTTCTTCTTGTGAA
GGAATGTGAATCTGATAGAGTTTATCTTCTCTATTAACAACATGTGATGGAAATGCAGAT
GCCGAGATGCGGATATGATCAATTATACGGATCACCGAACTCTGAATGTGGACCGGTGCC
GTGACAGCATTTGGATTTCAAGATAAGTAGGGCGTGCGGTGGTTTGGCACTGTGTCGTCC
GGAAACGCATGTGGGCTGCCAATGCCCATGGACCCGGTTGGTCCATGAACTGCACCTTAA
TTAGGGTAGGGCCATAAGGGTTAGGACCATACTAGAACATAGTTATACATAGAGGGATGT
TTCCGCGTGGGATGCTATGCCAGAGATTTGGCAGCAAATGGCTGCCCATGCCCATCCCAC
AATCGTTTATGATCTTGTCTCCAATCTTCATAGCCAATGTGTCAATAATTACGTATGATC
ATGAAGTAAATGCTGAAGAAAAATTGCTAAAGAGACATTAGAAATTGACACTTGGGAGTA
CAAGTGATTGATCATTAACTTTTCGTGTCTGCTAAATGTCATGCGTCTCAGCACCTGAAA
AAAATGGTGTCGGTCACTTTTCCTGCAAAGCATGAGGCCAAAGGCGAGTACGGCGCGAGG
AGTTGCCGGTTACGGGATTCTTCGATAGGGGTTAGAGCCTTAGAACATTTCCAGCCATTA
GGCGCCCTCAGGAGCCGAGCCGAAATAGCGCCGTCTGGGGGCTAACCGGCGAAAAAAAAT
GGCTTGAAAGGGCTCGGGTTCCCACACGCGCCCCCACCGTAGCTGGCCACTGAGAGAGAG
AGGAAAAAAAATTGCACGCACATGGCGGGCCTAGCAGAAAAAGGAAGGAAAGAGAGAGAG
CAGAGAGACTGACCGGTGGGGCTTATGCATGCAAAAATAGCGTCGAACGCCCCAAGCGCT
TCCGGGGGGGCTGGGCTCGACCTGGGACCGTCGGGGCTAGTTTTGACCAAATCCGGTGCA
AAACGACGTCCTGGGAGCGCGACTGGACGATTCTTTTAGCGCCGGTGATTAAGAAGGTGC
TTCGAAGGCCGTTCTAGGGACGCGGCTGGAGATGCTCTTATAGGGATGGTCGGGAAAGAG
TCCGAACTTAACGGGTGGGAGAGGGGGGGTCGCTAGAACTGTTCATCAATAGGGGTTAGA
GGATGGCCGGCAGCGGGTCCAAACTTGATGGGTGGGAGAAGGGGGGGTCGCTAGAACTTT
TCATTGATACGGGTTATAAGGATGGCCGGGGGCTGTGGCGGGGTAGGGGTGGCCGGTGGC
AGCTGTTGCAGGGTAGGAAGAAGAAGATGAGGTTGAAAATGGACAGTATTTGATCTATTT
TTGACCGTCGGATCAAGATCTATAGTGGTCCTGAGAAAAGTGACTCATGCAAAAGAAAAG
AAAAACTGTTTCCATCATTTCATGTACCTGGCGTATGGTCAGTCCCTTATTTGTTTACAG
ATTCAAAACCTCTCGACTCGATGCACCTAGCAAAAGTTTACCGGAAATGTAGTGCTTGGA
TATCAATATGAATATCGAACAATTTTGCTGAAGAATTGGTACCTTTTCCATGGTCACTCT
CTTGCAAGCGCCAAGCGCCATACTCAGGAACGTGCTAGTGGTCAGTTGGTCACGAGGAGG
CATCACGGTTGGCCTGATAGAGTTGGAGCATTTGGACTTGGCGGGGAGCTTACAGATATA
CATGCTGTGGTGTAGTAGCTTTCTCTGGACTTCTTTGTTGACTTGACGGGCCCCTTGTAG
TTGCTCGAGAAAACAACCCTTCCGGCCAAATTGGGCACGACATTCTCGCGCATGCTAAGC
ACCATATATATAGATCGTGACAACCCCTGGAGGGGACAAGTTGGCAATGGCATCGACGGA
AAACGACCAGCACGCCAGTGCAGGGAGGGAGAGAACACTGGTGTGTACAGCACACCAATA
TCATCATGGGGGCAGGCATTTGGAAATGGGCTGGGCTCCTATCGACCCCATCCATGGTTT
ACGAAGTGCGTCTCGGGGCCACTTTGGGCTTTACTAACAGTTAGGATGGCCCCTTTTTTT
TTTAAATAACTGGGATGGCCCGAGGGTAAAACTGCGTGGATGGGCCGGGGAAAGAACAGC
ACCGGCATTTGTGTGGGTAGGCGAATGCGATGGTTGAAAAAAAAAACAAGACAGCAACCG
AACACTCAAAACAACTTGGACCGCGCAATCCATTTGGTTCGCACATGTCCATTTGAGTAG
CCATGGACAAAAAAAAGGTCCAACACGTCGACGCAAACTCAAATCGTGTCCGTCACATGT
CCGCGTCGATCAGGTCGCGGACACGAACTAGACGCTCCCCGCGTCCTCACCGCATCCGCC
TTGGGTCCATCTGTCGGCGGCACAACCACCACCCGCGGACGTATTAAATGCGACCACCAA
CCTCGGACCCACCTGGCAGTGGCTGGAAACTGCCGGTCATCGTCCTTTTTAATCCAAACG
TATAGCAGAGCCGGCCTCATCCACTTCTCCTTCCCGTCACCATCGGGCCACACTTACTCC
CCCAATGGCGACCGGAAACCCTAACCCTAGCTAGTCAGCACCATCGTCCGCCATGCGATT
CTTCAGCAAGGGTAATGGCAAGCTCACCCCGGGCGCTAGCTCGTCCCGGATGCAGGCGCC
GCCGCGGGAGCGCGAACGCGTGTACATCCCAGTCCTCCAAGCTCGGTGGCACTAGCAGTA
CAGGCAAGCCCTCACCTACCCACATGTCAACCTCTCGCATGGTTGGCATCTGGACCACCA
TTGCATCCTCGTTTCAGCGGTACCCCGGTCTTCGTGTGCTCATGCGGAGGAGGTGCGTGA
GTGACGCGAGCTGCTCACCCCTAGCACCGGCGACATCCAGCATACGCGGCCTTCGCCATG
GAGCACGAGCAGGAGCGCCTCCACGACGTCCAACTCGATCCACCGTCCCACCGCCACCCC
CTGAGGTGAAGCCATAGGAGCATGAGGAAGAGGCTGCCTATTAGGCCGCCCTCGAGGAGG
CACTAGCTTACGTCATCGAGGAGAGCATGCGCGACGAAGACGTGCACCGGGAAGGCCTCG
AGGAAGCCCTCGCGTTGTCCACGACGGGCGACTTCGTCCTGCCTCCTCCTCTGTCGGCAC
CTCCCACGCTTCCCGAGCCCAAGGTCGAGGCAGAGGAGCGCCAGACGGAGCGCTACGATT
GGACCGGCTAGCTCCGGGAGTGGTTGTCCGCGCCTCCCATCTAGTTTGATGCCACGTCGA
AGCAAAACACAATGTATCTCATGCAATGGAAGACGCGCGCGCTGGCGGAGGAGCGCGCCC
AGGCCGAGGCGCAGATGAGGCTGGAGCGCCGCTAGGCACAGGAGGAGAAAGAGGAGCGTC
GGGAGAGGGAGACGGAGAAGCAAGCCCGGCAGCCTACGCCCCAGCCGCCGGTGCCGCCGC
AGGACGTTGCTCAGTCCTGGGAGGCGACGTTCCCTTGGGCTGGGCAGGCGCCGGAGGTCA
TCGACATCACCGCCCCGATGATGATGGGGACGAAGACACCTAGGATAGGCCACGCGGCGA
AGCTTTTTTTTTTTATGTTTAATTAAGTTTATGTAGACTTGGACCGGCTTTTGATCATGT
TTTAATGTTTAATTATTAAAGTTTGGACGGCCTTTTTTTTAAGTCCTAGTTTGAAATTTG
AATTGAGGCCTGCATTGGATGGTCTAGCCAATCCATTTACAAAATCGAACATCAACATTC
GTTTAGTCGAATCAAACGGATAAAAAACAGACAAAAATCATATTCGTTTAGATCGCACAG
TTAAAGTTGTTCTCACTGCAGCTGAGCCAGTCGCACTAAAAGAAAAGACGGCTGGGGCAA
AAGGTGTAAAAAAACGTGTGGTTTCGCAGCATGGAATGAAAGTAAGTAAAAATGTAGTAC
CTGAAGCTGATGGAAGCGGTGATGGTGTAGGCAATGCCGTAGCCGAACAAGGCTGTTTGC
TGCAACAATTGGCAGACCCACGCACTGCTGCTACCTGGCAAATCATATATGATTTTTTTT
CTTTTAGATCAACACTTGGAGTGATATACAAATATATATACTCTACAAAAGATCGTACTA
CTGGAAACCAGAACACGGCGCCAGTAGGTTCCAACAATGTTGACGCATGTTTAATCGATT
CATTCTGGAGGAAGCACGGTTGGTACGGGGGGAGAATCCCCTGGTGTACTACGGATTAGG
GTCGCAATCAGACTGCTGCAGAATGGCTCGTGTCTGACGAGCTCAAACGGGCCACCCACC
TTGCTTGCCGTTCCGGCTAGCCTTGGCCAGCTGTCCTGCTCTGCAGTCCCAAACACGAAC
TCGTGTACTGCGACCAGTTATATTAAAGAAACAGCGGTCTCTAATCAGGTTGCGCGCCCA
CCACGTGGCCCCAAGCAGGTTGCGCGCCCCTTTTGACGTGCTCTCCGAGAGTGACTATGG
ACCAGTCGGAGGAAGAAATGCAGAACAGAGACGTGACTTCATAAGTTTTCCCTTCTTTTG
TAATGCTACAAGGAGCTCTGTTTAACGACTTGATTGCCAATGCCTGGCTATTTGTTTGTA
GCAGTAATACTAATAGACTATCCGAATCGTCTCTGTCAGACTGTCACTCAATTCTGGCGA
CCAGTAAACGGATACAGATACCCGCTCATTAACTAAAATATCTGTGCCGAAGAGAAGATT
TGGATTGAGAAGAGTTGGAACAGAAAAAACGACAGTAATGGATGGAAAAGGACGGGCGGG
ACGTGGATTGCGTACCTAAGTTGCGCTCGACGGCGTGGGCGTAGGTGCGGTTGCGGTGCG
GGCCGTGCTCCGGGTCCGGCGACCGGTAGCAGTCGGCGAAGATGGTGGACTGCAGCGCCG
TCACCGAGGCGAACACCACCATCATGCCCGGTCCGGCCACCCACCCCAGCTGCGCCATGC
TCCACGCCAGCGACAGCACGCCGGACCCGATCACCGCCGTGATCACGTGCGCCGCCGCCG
TCCACTCGTTCCCTTCATTCCAACCCAAAATCCAACGGCAGGGTCACAACACGAGTCACA
ACACACGGACGACCAAACGCGGAGGCAAAAGGTCCAGAGAAATCGATCGAGTGGATCGGT
TTGGTCCGGGCCGGCGGGGTGCTCACCGTTCCTGACGACGTTGGGATGGCGCTTCGGCCC
GTCGGAAGAGATGAGAGGGGCCGTGGCGTCGCCTCCCCCTTCGCCGAACGCCATCGTCGG
GGGAAATCCCGCTCCCTTCCCTTCCCGGCCGGCCGGCGGCGAGCGCGGAAGGGGAATCGT
ATCACGGAGACGGACTCGCTGAACTGACTGGAATACTACTTGGCGAATGGTGGCTGGATC
GACCAGCTGTTGTTAGAGGAGGCACTGATACGTGGGTGGATCGAGAGGACGAGGAAAAGA
GGCTCTGTTGTGACTGGCTCCTCGAGTGTGTAGGCCCGCACGCTGGTGAGGTGAGGTGAG
GTGCTACTTGGCGCCGTCTGATTGCGCTGTGGTCAATTCACACAGGAAGGAGGTACAGCG
GGGCACTGCGTAATTGCAGGCCACAGATTGTATGAGGACACCGAATTTGGTTTTGAGAAT
GATACTGCATTGTGCAATCATTGCAGCATGCATGTTTTGTTCTTGGAACAGTCGAGACAG
GGATTGGAGCCCGGGTATTCTGGATCTCTCGAGAAGAAACCAGATTTGCCTCACAAAAAG
GGCAGAGGGGCAAACTGTTTGGCATCTTCTGAAATACACCATGTGCTCTAATCGTGTCCA
CGAACATAGATATGAGTGGCATCCATACAATTGTATACCTCAAATGCCCGGACACGTTTT
AAACTAAATTTGAACAAACCGTACCATTCTCATGCAAAACAGAGGACTTTCATTTAAACC
GTCCCACATTCATGACATTTTTTTGACATGTTTCGTCAATCAAAAGCGGACATGACATTT
CTTTAATATTGCAAAAGTTGACATAGTCTATTTCTTCGTTCTCGTCCGTGTTTCAAATCT
TTATTGTTCATCTTTGTTGATCATGAGCTCTCTCAGACTGCGCTTGGATCGTCGTTTTGC
ACCCGTAAAAACCTAGCCTCCTGTAAAAAATACAATAGATTCGAATCTCCTCCTTGGATG
ATTGTTTTTCAGCCATAATATTTACCCTCGTATGTCCGCTGCACCGTATTTAGCTTGTAG
AAAATATACCCCGTCTGCGGTCAGTTTTCCCCACCCCCGTATCCTTTCTTGACCCATCCA
CTCGCCCACGCCGCTGATGAAAGGACGTGGATGTCGCCNNNNNGGGGGTGAATAGGCGCT
TTAATATAATTACGGTTTAGGCTTGAANNNNNNNGAAATAAAACTAACGTTTAATTTATC
AAGCACAAAACCTACAACAACTA