morexGenes - Barley RNA-seq Database

Contig contig_46565
Source Contig contig_46565
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46565 (8408 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_46565

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62436	2	1550 bp	MLOC_62436.1	Available	Available	LOC_Os07g37210.1, FRAME:-2, EVALUE:1e-134, 13107.m03827 protein MYB family transcription factor, putative, expressed
CDS Structure of MLOC_62436

Contig Sequence (8408 bp)

>contig_46565 8408 assembly3_WGSMorex_rbca.fasta
GATAGGAGGGGCGGGGAGGAGGGGAGAGCCATCACGCACCATCGGATTTGTGTGGTTTTA
GTTCAAAATTTCTCCAGTCAAACACTAAAATGAAACTATTCAATTTCAGCTCAGTATTCG
TTTTAAAACAAGATTCCATGCCATGTGAGAATACCCAAACAAATTCATTTTACCTACGAA
AGTGACTTTTTGCTCCTGAGCTCAAATGAGCTCGCTGAAAAATAGAAAAAAAATAAAAAC
TTTAAAAAATTACAGAAAATTGAATATTTTTTGTAAACAACATTGTCAAAAGTTTCTTTA
GCCGAAGACGCCATTACTCATGGAGTGATCCAGTGAATGCAAACTTGTCGTCAAGTAAGA
CAACCAAGCCTAGCATGCAGCTTTCCGGCTAGTAGAGCTGTACTCGAGAGGAACCACTCC
ACGGCGCGTTAGATAGTCAAAGGCTCAAGGTACGTACTAGTACGTAGAACCGCAGACGGA
TGGATACGTGGGAAGGGCGGACGATGCCGGACAAACGATGCCTTTTCGCGCCCCAAATCC
GGCAACGAGTGGGCGGCCCGCCCACGTGCCTGGTGGCCATTCTCGCACCGGTCGCCGGCC
GCGCGGGGAGACGTACGGGCCCTTCTCGCCGCGGCGTAGGCCGCTTTCTTGGTCGGCCAT
GACTGGGAAACGGAGGCCGCGGACCAGAAGCAGAAGCGAGGAACCAAGTCAAAGCGCCCG
CCGCCCCAAGCCCGACACGGTTAATATTCTCACGAGCCGTGTCTGCTCGCAATCGAAAGC
GACTCGCACCGTCGCCCGCACTGGCCATGAGCCCGTGAGCGAGACCTCTGGCTCTGACAA
GTGAGATGAGGCGTACGGGCCTGTTCTTCTTCCCCGCTCGGCCTCGCGCGCGCAGGTCAA
AGCTAGCTAGCGCGCACAGCGACGTGCGGGCTCGGGGTGGCAGCCGTGCTTCTGGTTCTG
GGCCGTGCCGCGGGGTGGCAGCCGTGCATGGATGTGGTCCTCGTAGAACTTTTGCTGCAG
GCCTCTGGCCAGCAGCACAAGTGTCCGGCCCCCTCCATCAGTCAACCCGCTGTGCACGCA
TGGTCCTAACATGCGTGTACCGCTCGCACACTGTGTCGTGCTTCGAGTAGCGTGGTGGTT
TTCATCCATGGGGTCGCAATTTTGCACGAGGATGGCTGCCACCGTTCCGCCGGCCTATCG
ATCAGGAACAATGTCAATCCGCCTCGACGACTTACACACCGTTTGCGCATGCGCACGTAA
GCGCTACGTCCACAAGAAAAAGATGGCTACTCCTACTATGGGGGAGTACTCCTACGTCGC
ATGGTGGCAGATCGATCCGAGCCGGGGCCGTCCATCGGTGTCGACCCGCCGGGGAGAAGT
CAATGATTGGGGACGCGACACCGACGGCTGCCGCGGTCGTACGTCGAGGTGGCAAACCAC
GCGTCCACGCCGAGGCGCACTGGACGGCCGCGATGCGCACGAAAACGCCCCAGATCGACG
TCGACGTCCGTGGCGTGCATGCACACATCAGTAGCGCCGAAATACGGCCGCGCATTCGTC
TCCGCTGGGGTCGACACATGCACACTGCGATGAACGCTCGTGTTGTTTCTTCTCTCGCGA
ACTATTCTTCTCCTCCTTTCGAAACGTGACTGTCTCGTGCATCACATATGCACACTCTCA
ATGCCAATCACATGCATGCCGGTTTACCTCTCCCAATCAATTCACAGATTGTCTTCTTGT
ATACTACTCACATACTCCAAGCTAGCACTACCACCGTCGCCTCGCGATCATAGCTACTAG
CTAGATCAGTTACAACGTTTTCTTACCAACTTTGCTGTGGATCTACCATATCATACGAAA
ATTTGACAACATATACGCCCTCCCGTGCGGCCAGCCGTGTCGTCATCGGTCTGGCTTACT
CCCGGCCGGCTCAGCCTCGAAGCTCCACAGCGCTTGCCCTCCTTCGTCCTTGGGAAATCG
ACTAACGCCACACAAAAAACCAGGCAGTTGATGAACAGCAAATGCACATATTCAGACGAC
TCTAACATGTGCAAGATTTTTTTCACACAAAACAAAATACTAGAATTAGGGCACGCCCAA
TTTGCAGGAAACAAAAGTGAATAATACTACATGAATGTGATAGGATGCGGTAAGCAACCG
GGGGGATTGTGTTGGCTCGTCCTTGCGCATAGAGCTCTGATTATGTGTGGAGTTTTCTCC
ACAAACACATGAAATGAACAGTACTTCTTGGGAATTGTTGTTCATATTTCCTACAAACCG
GATGCACCTATGGGAAACTTCCCTAGAAATCTTCGTTTCTATTGTCTTCATGTGAAAAAC
CTCCAAGCCAAATGATCCCTACCTCGTACTCATGTCAAACCCTTCTTACAAGCAAGGTGT
GCATTGTTTATCTTGTGGTTTTTAATGACGCTGACATGTACGACCTAGCTACATAGAGGA
AGAGATATGGAGGTTGATCTCGCTAGTTGTCTTGCACGCCCATATTCTTGTCGTCAGAAT
ATGTTCAACTATGAATTGCTTTTACCTAGTACTCCCTCCGTTCCTAAATATAAGTTTTTT
AAGAGATTTTCACTAGACGTCTACATACGAAGCAAAATGAGTGAATATACACATTAAAGT
ATGTCTATATACATCCGTGTGTAATCCACTGGTGAAATCTCTAGAAAGACTTATATTTAG
GAACGGAGGGAGTACAATTCACATAGATCATGGCCGAGGTGGCCACTAGAGGAGCACGGA
TTTGCATGTTATGGGAACGATATATATAGACAATGATACATCATTGGCGAAACAAACGAA
ACCACTCAAGGAAACAACGTGTTATCTTGCCATGACAAGTAGGCCAACATTGCAGGGGAT
AATAATAAAGAACCACAAATTGATTATTGCATTTCAACCAACAATCCCTTCAACCTAAGC
ACAAAGTCTTCTTTTGGCCACTTGAACATAATATGACGAATACAAAGAATCTTCTCCGCG
TAAAAGTTTTTATCCTTTAAAATTACATGAAAGGCGATTTCATATGCATGGGATAACTAC
GCACGCAGGGTGATGGCTACATACCCTTTGGCGTAAGTGACTTTTTTGATATATGGGGTG
TTGTTTTTTATGGCATTGGCACAAGTGCATATTAATTTGTTGTATAGAAACGACTTTTTC
TCACTTTTCTTTGCCTTTGTTATTAACTTCTTGACACAAGTTCCTTTTCGTTGTGTAGAA
AGGGCCTTTTCTAATTTCTCACAATCTTTTTGCTTGCCTTTTTGGCGTAATTGTCTGTTT
TCTTACATGGCTGGTTCAAAGTCATGATGTTTTCATTATAAATTTATTTTTTCTTAGACC
TAAATAACTTAACTAAATAATTAGAGACAAAAACTAGGGTCGTGCGTAGCTACCACCATG
GGTAGCAAACTATTTATGAAAACTTTGTTATGAAACTTGAAACTATTTGTCACCTTTTGT
TGGGGATGCCCAAAGCGCAAAACAGTTGGAATTACATGTGCGTGAACATAAGAATAAACC
TCTACATGTACGAGACTTTCATGGATATTGAAGAAAACTAAGGGTGCCTCTCTAAATGGA
GATCAAACTTCATGTGAGTATTTAAATTGTTAGAGACAGAAAAGTTTTTTCGGAATGAAG
ATGAATCTTTTGCTAAGTGGTAGTAAGTCTACATGCCTGAACTGGAAATGGTAGGCCAGT
GAGCTAGAAATAAAATATGCCTTACCTTTTTATGGATTGTGTGAAATCCTTGTGATATCT
TACTTTATTATTTGGCCAACTCTAGGCATCATGCGTGCCTGCGATTCATGGTCGTTCCGA
TCTTCATGACTCAAAGGCGTGTTGGAGGGGTCTAGCATTTGGACTAAGTCGTTCTTGATG
CCCATAGATCCAGTGATGGTCATGACCAAGATAGAAATTGATAATGTCGCAATTGCACTG
TTGTGGGTGATGGAGTTTGAAACAAAATGTGATTGGGCTCCAGGAGTGCGTTAACTCACT
ACAATTGATTATTCTCAAAAACAAAACTAACGATAATTGCTTCATCCTCGATATTAAAGT
CAAAACGAGGGGTCATGAAGAACAATAGAGAGAGTGGTAGTGGTGGGAGGGCTCATAGGA
AACATGGTAGTTCTATCAAGGTTTAGGGGCCCTAAAGATACCTACTCATATATATGTGCA
TATTAATGGAAGAGTGTAGTTGTATGTATCAAGCTAGGTCTTTCGATTATGGCATCTCTA
ATGGTGATTATCTTTGACCGACGACGGTCGCCAATGCCTTTATATAGTTTTGTCCTCTTC
GGTAGCAAGACAACTATTTATGGAATGGCATTACTACCTAATCTTGTGTTGTTACAAGGA
GCATTTCTCTTGATCGCGTAAATAGAAAGAATCCTTCGAGTCCCTACAATGGCAAGATTG
GGTGCGGGCCCGGGTGGTCTCTAGACATTCTCTAGTAGACTCATTATGTCCACCATGCTC
GTTGGGTAGAATTCCCTTACTCACGATAATAAGATGACATGTGTGAGCCAGTCGACACCA
GTTAGCTCCCTGCCCTGCTCCATCCCGCCTCCTCGTCCTCCTTCTCAGCATCCCTTCCTT
CCAGTTTGTCCTTTGCTTTTCCTCCTTCCATTTTTTTTCTTTCCCGATAGATCACACATC
TCCATGTTCTCTATTTTTATGCGCCTAAATCAACATTTTTTGTTATGTTGTAGTACTACA
AGATCTAATATCCAACGCATGTTGTTCAATTTGTTGTTGAATAATGACCTACCAGACAGT
GGCCCCATTTGAGCAAACGTATTATGCACATAATTTCAGAATGCATTTGAAGACAAGGTC
ATGGCCTCATTAATCTAATGCTTTTTCCAGTTAAGGTCTTAAATAGTAGGAAACGATGAT
ATGCCATGTGTTTTTTTAAATGCTGATTTTTTTTAATCTATTTACCAATTGTCAAAGTAG
CACAAAAAACACTAAAAAAATACATTCAGATACATAGACCATCTAACGAGGACTACGAAA
ACTGAAGGTTATCACCCCTCCAACACTGGAGCCCGGCAAACCATGTGTATAACTAAGAAT
GCATGCATACATTGATCAGTTGCTTTGGTGTGTATGTAGGGTATACTACACAGTACACAC
ACTGGCCTTGAAAGTGTAGTACCTAGGCTCATGCAGCCTTGTACGAGTTGTGAGTGTTGA
CCTAACCATACACAAACAAGACGGTTATATCAAACTGCAACAACAAAAATTATAATATCA
AGCTACAACATATAGTAACTATGAGAAATGTAAACCTTGATGAAGCTTACTAATTAACCA
TCACCATAGGTTTCTCTTTGAATTACAGAAAGAACAGAGAAAAGAAATACATGTGGTCAA
TCGGGTAACTGTTGGTCGCTCATCGATCAGACGGAGCAGGCAGCAGCAATCATTAAGTTG
CACACCAACTCTAGTCTATTTTCCCAACGATTTAAGAATAATTGCTTGTCATGTGACCAT
AAGTGACATGACAGTTACTTGTGTCCTTATTCTAGTCGTGTTTTCTCCCTCCCTTTGATT
TCTTCCTTTATACGTATCATTATATGCTGGTACAGTAACCAATGAAATAAAAGAGGCAGC
AATATTAAACTAAGCAAATCGAATCGAATGAACAAGAAGAAACAGACAATAAAAGTAGCA
TTCTAAGAAAAGCAACCGGAGTGACCCTATTTTTCTTCACTGGAGACAAAGGCATGATGC
AAGTGAGAGGGATAGCAGCCGCCTCCACCAATCATACGAAGCCACCTTTGCCATGATTCC
CCACACTGACATGCACCACACACACTAATGAATTTAAATTCGAAACAAATATAACAGGAA
AAAAATAACAAAAGCGAAGCTGCTTCTAACAGTAACCAGTGACCATGAACTGGATAAAAA
TGGTACAACAATCCTGTACAAAAACGGCTCTCGATCGTGATCATCATCATATGCATGCAT
GTTTTGCCCCGTCTCGGTCGGCACGTACGTGATGAACTGTTGGACTTAGTTTCCGCATGC
ATGCAGGGTGGAATGGACCCCGTACTTGTATTTTCGTTACTACATGTAGTCGCTCACATC
CAGGAGACAATCGGACAGGTGCATGTCGACGAACAGCCCGGCGGCGTCGGCGCTGATGGC
GTCAATATTGCTCGTGTTGGCGCAGAAGGCTGCCGTTGAAGCCGAGTTCACACGCCCCGC
GGGGCTCGATGACGGCGTGGATACGCCGGACCCGACGTTGCAGTTGTTGCTACTTGTGAC
CGTGCTGCTCCACTGCAGGTTCGACGTGTCTGACGCCATCTGCATCAGCGCCGGCATGTA
GTCGAGCTCGTTGTCGTAGCTCAGGAGCTGCCCGTAGTCAGAGGCCACCATGTGATCCTG
GTGTAGTTGCTGCGCCTGGTTCGCGTGAGCCAGGCCTGGCATTTGGCACGCCGACGCCGA
GCTGGGCTGCATGAACATGTCTGCGGCCGTGGCGTGTTGTGGCGGCGCCTGAGAATGAGA
TACCTGCTGCTGCGCCATCTGCGCCTGGATCAGCCAAGGCAGGAGCATCTGGTGTTCGCT
GGTGGGCTGCGACTGCGAGGTGGTGGTGGTCGGGGCTGAGAGGAGGGTGGAGGCGAGGCG
GAGGAGGTCCGGGTAGTTGGCGAGCGGCTCGAGGGCGCGGAGCGTGTCGAGGTCGGCCTG
CGTGGGGTAGTAGGCGGCGGGCTTGAGGAGCGAGGAGAGGTCGAGGAGGTCGAGGCGCGG
GGCGTGGGTGACGGGGTCGATGCCCATGCGCAGGAGGCGCTTGCGGATGTGCGTGTTCCA
GTAGTTCTTGATCTCGTTGTCCGTCCGTCCGGGCAGCCTCGCCGCAATGGCTGACCACCT
ACACAAAGCAATCATGCAGGAATAGAACATCAAGATCAAACTCGCCAGGAAAACCGTACG
CCTAGAGTAGCTGCTGCTATAGCTATAGTACTCGTACGTACGTCGTGTTGATGTGAACTG
AGTAGTTCGTTCTTACTTGTTGCCGAGGATGCTGTGGAGCTGGATGATGGCCTCCTCCTC
CTCGAAGGAGAAGCGGCCGCGCTTGATGTCCGGCCGGAGGTAGTTGGTCCACCGCAGCCG
GCAGCTCTTCCCGCACCGCTCCAGGCCTGCACACACACACAGACGCAACACCACAATTAA
TTATCCATCCATCACCTTTCCGTGCCTCTCGATCAAGCAGCTGCATGTATTCGTCGCTTA
CCGGCATTCTTGGGGAGGGTGCGCCAGTTGCCCTGGCCGTGCTTCTTGATGTAGGCGACG
AGCTTCTCGTCCTCCTCCTGCGTCCACGGCCCCTTCTTCAGCCCGGTCCTGTCGCAGCAC
GGCGCGCGCCCCATCAACCTACTGTAGATACGGGTCGGGCGATCGAGCAAGCTAGCAGGA
AAAGGCTCGGTTTGTCTGGCAGACGCAGTAGAGGATGGTGGGGAGGGAGGTAGCTAGCTA
CTCGCTAGGAGAGTGTGAAAGAAAACTGGAGGTAGAGGACGGGAGACGAAGGAGTGTGGG
GGCGATGGAAAGGCTTATAAAGGGCGCGAGGGCGACGGGCCGGGCGTGGCGGTCCAAGTC
AACAGGATTCGGTGCCGGCCTTTGTTTATCGCGGCCGCGACGTGGCTCCCCTGCCTCTGC
CTGCGGGCTGCGTCTCGTCGCAGGGCCACGGCCACGGCAGCGACCGGCGGGAAAGCGTCC
CGTCCTTCGCCATCCGTTGGATGAGGATGGATGGGTTGCGGCCGGAAAACAAAAAGAAAA
CGCACGCAGGGCGGGACACCACCCCTCACAAAGTAGCCCGGCGCATCCCACGGCACGCGC
TGGCGTGCCACCCCGACTGTCCCATCGCTGCAGGCAAAGCTAGCCTCGTCGAACGAACAT
TGTCTTGTGTTTTGACTAAGATAATCACATGTGTCAATCCTTAGAGCAACTCCAATGCAT
CGTCCGTCCGTATCTGTTTGAATCGACACGGATAAAAATGAAAACCCAACGCTTCGACCT
AAACCTAGTGCCCGCGGGTTTCATTTTCGGTCCCAAATTACGTCTGAGGGGGTGTTCTAT
TCCAACGGACTGACTTTTTTTAGTTTCAGGGACTAAAAAAAGTCCCTTCAGTAGAGTATT
TTTCTAGTCCCTTAGGTCTTGTTTGATACTAGTGTATTTTAGGGAATTAGTGGGGATTAT
CCCGGTCAAACTCATAAATCCCCACATATTCCATAACAGCATTTGGTTCTAGTGTATTTG
ACATGTTTCATCCCCACATTTCTCCATAAATCCCTAAATTCTAATGCATTTTTCTCAATA
CACAATACACTACCACTACCTAATGGATTGGGGATAAATGAAATTTGAAGGAATTGGGTG
AAGGTTGG