morexGenes - Barley RNA-seq Database

Contig contig_46527
Source Contig contig_46527
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46527 (8974 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_46527

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62398	2	6168 bp	MLOC_62398.2	Available	Available	LOC_Os04g55030.1, FRAME:-3, EVALUE:0.0, 13104.m05698 protein cullin, putative, expressed
CDS Structure of MLOC_62398

Contig Sequence (8974 bp)

>contig_46527 8974 assembly3_WGSMorex_rbca.fasta
CGCCACGACCGTCGGCGGCTCGGGCGGCGGCCCCCGGCGGTCGCGGGACGAGGCGGAGGG
CAAGATGTGCGCGCACTGCCACGTGACGCAGACGCCGCAGTGGCGGCACGGGCCGGACGG
ACCGGGCACGCTGTGCAACGCCTGCGGCATCCGCTACAGGATGGGCAGCGACAAGCTGGT
GCCGGAGTACCGGCCGTCGACGAGCCCCTTCTTCCGCAGCGGCGACTACTCCAACCGCAA
CAGCAAGGTGCAGAAGCTCAGGGAGAAGAAGGTAAAGGCCCTCAAGCTCCACGGCGATGG
CGGCAGCTCCGGTGCACCTGGTGGTAAGCCCGGCGGCAATGTAGATACTAGTTCAGTTCT
TTAGGGTGTTCTTCAGGTCTCTTTGGGGATCTTTTTTTTTAGCATGTTTAATTCGATTTG
TTAAAATCATCAATAGGTCGAAGAGGATGGATGACATTCTTCATGTAAATATTTATAGGT
TATGTTCATCAGGTTTTAGCAGCTTCGGTTTGGCTTATTAGCTCGATTGGGCATGAAATT
GTTTATATTAGACCAGATGAAATTGAGTTGCAATGGGAAATTAGATGTCGACAGGCATCA
TTGATAAAAAAGTTTTATCACCTTCAATATGCTAACAAGTTGCAAAAGCAACATATGTTC
AGCTTGCAAAAGCAATATATTTTCAGCTAAAGCACACACCATATAACAACCAAAGCAAGA
CAAGCACGTCCTAAACTGAACAAGCATACATGAACACTCGCCGAAGCCCCAGAACAAGCA
TATTGAACACTCGTCGAAGCCCCTGAACAAGCATACATGAACACTCGTCGAAGCCCCTGA
ACAAGCATACATGAACACTCGTCGAAGCCCCTGAACAAGCTTACATGAACACTCGTCGAA
GCCCCTGCAATCTACTCTCTCCGTCCCATAATATAAGAACGTTTTTGATATTACTGTAGT
GTCAAACACTACACAGAGAAAGGCAACAGGAAGCATCTGGCGAGAACTGTGACTACCATC
AAACCACCCACGCAGAAATAACGAGATATAAGATAAGATAGTTCTATATTATGTACCAAA
GATGGCAGACCGGAGGTTTCCAAGCCACCACGACTCTGCAGAAGAACTACAGCCAAGATC
CAAGTCAACGGTACCGGGACGACATGGTTTTTGTTCATTCGTTCATGGACAGTCTAATGT
TTCGACAGCAAAAGAAACCTAATTACGCAAGATAGCGGTAGAGCTTCCTATCTACCTTGT
CCCTCTCCAGGAACTCACGCTCAATCAGGGACTCGATCCTTTTCTTGATCACCACCGGGT
TCGGCAGGAAGCGTGCCTGGAGCTGCTTCGTAACCTCTGTGACTATGCTGTTGTGGTCCA
GGACCCTCCTGGACTTCATGATCCTCACGATGGCGGCCTCAATCTGGGGCTTCCGGTCTT
CCTCGACCCTGTGGCGGGTCTCCTGCTTCTCTGGCTCTGACTCCTTCTGTGCAACCACAG
TGCCAATCTTCACCTTGACCAACTTGCTGGTAAACTTGTCGTTGAAGTGGAAAGAGTCGC
TATCAGATATATCCTTGCTCATGGGCTCCTTCCGCAGTACGTTCTTGCCCTTCACACAAG
CCAGAGACTGGAGGCAGCGCTTCAGATCAACAGATGGTATGGCTGTGGCCTGCTCAATTT
CCTTGTAGGTCAGAGTATCTGTTGAGTTAAATAGCATCAGGACACACATCTGGTAAGTTG
AGACATTTAGCTCATGCTTCCGGTCTCCAAATGTTGCCTTAATGTCTGCATTCCCCATAT
TTGTCTGCCATGTCAACCTCCTGCCATTGTGCGTGCCAAGGTAGTGTGCCCGGAACTGCT
CAGAAACAACAAGGATCTCAGGTGGAAGATTGCAGGTAGCGCATGGTTGTGTTGGCCAGG
ATCCAGTGGTGAGTATCTGGACAGATATAGTTGGGCCATCAACGTCACCAGCAAGATTGG
CATAGAAACTTTGCATCGTATCCTGAGACGTCTTCAAATCAGTGAACATGCTTTCCAACT
TTGAGGTAAACTGGTAGCCACATTCAGTCTTCAGCTTCACAAGCATGTTCCTCTCAGCTT
CATCAGAACTAGTTTTCCCAGATAGAAGGCGTTTTGCCAAGTGCTGCTTGTAATACTTCT
CAAAAACATCTTTCTCCTGCAGGTACCTGAACAGCATCATAACCTTGTCCAGAACTGTCT
CAATATCCTCTTCATTGGCAGCTCCTTTCACACCTTTCCGAAGCTTGTCATCAACATACA
ATGATATGAACTCAGGGGAGCGGTTGTTCAAGTTAATGAAATGCTCAAATGAGGCATTCA
AAGCATTCTGGAAAGTCTTGTCATTGCCGAATGAAACACTGACAATCTCATCATACTTGT
CCTTCTCATTCAGAAGACGCTGGACGAAATCAACAGGGTCCCTTAATCTCTCTGGGTCAG
TCACTAAAATCTTTCCAGTCTCCTTAACATGAGAAGCCATGACAGATCTAATGGATGAGT
GCCCATCAGGGACACGTTTAAACAAGTCATACATCCTGGTCAGGTCTTCATGCTTGTCAT
TAATGAGCATATTCACAAGACCAGAGTTCTCCATTAGAAACAACCTCTGCATGTGATTCG
TGAGCATCTCTTTATCGACAACATTAGCTATCTTGTCTGCAGTTTTGGCGTCCATATACA
GCGTAACACGTTCTGATTCCTCAGCAAGCCTCTTCTCAGCATTCTTCAGGTACTCACCAC
AGTCACAACGCTCAATGCACTGCTGTGACTCACCACTATAGAAACTTGCAGACACCTCAA
GGAATGGCCTCTCAAAGTCATCCTGGTAGACAGAAGACCCGAGTTCCATCAACATTTTGG
TTGTATTCCTCATCAAACCTCTGTTTATCATCTCACCCATCCTCTCTCTATGAATGAGTT
CCAGAAGTGTGTCGACCAATCTCCCATGAATTTTGGGAGAGCGGACAACAATGTCTCTCC
ACAGTTCTAGACCATGTTCAAAGACAGGTGTCTTTTTGCTAGATGGAATAAATGTTCTAT
CCATATACATGAGTATATCTCTGATCATCTGTAATGCCTTGATATGATCAGCCCACCTTC
TCTGCAGCTCCTCCAAGAACAAACCACCTTGGGCAGCCTCTACTAATTTGCCCATTTCTC
TAAGGTGTCCTTTCAAGTTCTCTGCCAATTTATCATAGAGCCTCCCACCATGCTTGTGAA
GAACCATGTTATACGCAGTCCTGACCAACACAAAAGGGAGTGTTACATCATGAAATTTAA
ATAACAATCTGTACTAAGACCAATAGCATCATGACAGAACAGGAATATATGGCCTAAAAA
TAATATTTCAGATAATAAAGTAAGTCACTCCTACCTCAAAACAGCACAGCCACCACAGAT
CTCTAAATAAACACAAATACAGACTAGGCTGCACTATATTGGCATCCTTAGTGAATAACT
TGGTCAATAAGCACATTAAGAAATCCCACCAACTCCAAAACAACGGCAGACAACACATAT
GCCAGCCATAATTTCTAAAACAATATATATAGACAATTTACAGAAAATCATTCATACAGT
TTGTTATGTCAAAAGTATGATCGGTATTTCTTTGAAATAATCTTCAGTGAACTAAATAAA
AGCAGACAAGTCATCTATATGATTTACATTCCAAACAATCCGGTCTTACTTTTTTTTTAC
TTCAAACAGGTCATTTATACTCTGCAATTTCGTACCATAGTATCTATATATTCCATCTTA
GTAAAAGCGGACCTCGCACAAAGGAAAAATAATGATTCTTCATAACATAGGTGAAGCCAT
ATACAAGGATGACAAAGCTAATGTATAACAGTACAAAACTCTTTTGTGATACATATAACC
AACTAATATAAATAGGCATGACTGTAAGAGAACATCCAAAAGTTGTGGCAATCACATAGT
AAACTCATATACACTTCTAAAAGTTAAAAGAGTCGATTTCATAAAGCACTAGGTTGCTGT
GGTTATGGTCGCGGGCAGCTCAGGTTTGATGCCTGTAGGCACTAACCAGATGTATGAGGA
CACCCAAGCAATAATTAGGTTGTATTAATCACATAGTAAAATCCTACTCTTCTAAAAGGC
AAAAGAGTCAATTTCAGAAAGCACTGAGTTTCTATGGTTCTGGTTGCAAAAAGCACAGGA
TTGATGCTTATAGGTACTAACTCATATTTTATCATCAAATTTGCCATACAGCTCCCGAAT
GTCATCCATCAACTCCACCAAAGCAACCTACATACAACTTGGCAACTGCGGTGTGGCTAC
GATGAGGTTCTATGGAATCAAAACTTGGGATCTACTACCCCTATCCAAAAAAAACCAGTG
TGTATGTTGTTACTCATTCTACGGAGTTGAATTCATTTCTACCCAATCACTTTAAGTCCC
AGGATGGGTAAATGAATTGGCTATCGTGCATGCATGCATGCTTTGCTGAGAAAGTCTGTA
CCCCATAATCCGTTACAATAAAAATTATCTAACTACAACATTATGGGGGCTAGCGTGGTC
ACTTCAGCACTTACTTTAATTAAATCTATTGTCAAATAGAGCAGTTCAAGTGCATCCAAC
ATATCTGCCCAGCAGACACAGCCATTAATACTTGCTAATGAATTACACCATACATCATTA
TGGCAATATTGTGTTTGTTAACGGCAGACAAGATATTGGTTTCAAGATGAGAACTAAGTA
CTAAAAAATGTTAACAGCATGGGTACAGAGCCACAAGTTGCAAGCTCACCATGGATTGGA
CGAAAGCATGGATGAGTATACACATCCACAACTAGCACGGCAATATCAGTGGTACAAAAG
GATACTGGCAGGACACCAAAAGCGGGCTTTTATACCAGGTAGGAGAATCTCTAGAACTTC
GAGGATTATATGTGCATACATAGAACCCAAAAGGTGAGTATGTAATAGCTGTAACCTCAA
TATGATTGACTGATGCATAATTCTCATGCTTCTTCAGAATTTCCTACCAAGTGTAATGGC
CGTCCTTAGGTGTCTACTAGTACCTATTGTAACACAAATGTTTCCATGCTAGTCGGGGAT
GTTGAGTTTACAGTTACTGAGTAGAAAGGTTACAGTGACAAGTATAACTCTTACTAAATC
TGTTATTACGACACAAGGATTTTACTCATGGAAATCATACATTAACAATCAAATTTAGTC
ATGTTAACCTTCCAGAATAAGAAATCAACCAGAACCTAGAAACAAAATACACAGGGCAAA
GTAAAGATATGGCCTTTTTTTAGATATAGAACCCATATGCACATTCTGGACAATATATCC
TCACAACTTTCATGCCCCCTCTCACCCCAGTTTCCAAGTAATTAGCTAAAAAAATCTCAA
GAGGACTAAGATGACCTATTATAAACAAGTGAGTTCCAATTAATTTCATCATACATAACA
TTTGGATACATTATGACACAGACACACTATCGTAATGGTTTCAGCGCCAAACTTTTTTGG
TAACAACTAGATGCACACCAACATCCATGCAACAACACCAGCATGCAAAACATGTTCATC
AAGCCTTTCAATCACACCACACACTAACAGGACAAAGATTAGGGCAACTTAAAAGTATCA
TTCCTTGTAATTCTGTATCGGCAAATTAATTATATATAGCAGAACAAGAAATATATTATG
GTTCACATGACCTTGCGGGCACACTGGCAGGTCAAAACGCGCGCAAACTAATTTTCACCA
AAACTATGCGCTACATCAAATGTTCCACAACTACACCAGGGCAAGAGTTGCCAATTTCCG
ACAACAAATGAAAACTCAAGTAATTGACAGCCATGTCAGAGCGGTAAACCCCATGCACCT
AATTTCTACCAAAATTAAGCACTGTGTCCGCAACTCCAAACTATGATCAGAGCAACACAT
CCAAATTTGCAAATAGCAAATATAGAGTTGCGCAAGTCACGGCCACGGCACCACGGGAAA
ACCCCTGCAGCTAATTTCTATCGAAATTAAGCGCTACGTCCACGCACTTTCAAGTCTCGG
CGCATCCCGATTTCTTAACAACAAACCCCCAAACCCGCATACATGGGATAACCTAATGGA
CGCCCCGACCAATCAAAACCTAACCCAATAGACACCCGGAGCTTGGGAATTTCCTGCATA
TCCCCCACATCCAATCTACGACTATATACAACGAAACCTAAGCAAAACAGAAACAGAATC
CATACACACACCCTGGCGAAGGTTAGACACCACGAGGGATCCGAATCCAGCGGCGAATCC
CGATCCGCGCCAACCAGCACATCTACAGTCGGTCGCCGCACGTCCCCGGCCACACGTGCG
GCGAAATCAACAGCGAAAAAAAGAAGAAGAGGGGGGGCGGATCGGAGGTGTCAACCTGTA
GAGCTCCTCGAAGGAGAGGCCGCTGGCGTTGTGGTTGTAAATCTCGCGGATGGCGTCATC
GAGCTTCTTCCACGACTTGTCGAAGAACTTGGGGTCGACCTCCACCCGGTGCTTGAAGGG
CTCGATCTTGGGGATGCGCTTCCTCTGGGGGTTCATCTCCGCCTCCGCCGCCGCCGCCGC
CCGCGCCGCCGCGGCGATCCGCCCTCCCTGCCGACCGACCTACCTACCTACCTACCTACC
TAGGGTTCCGGCGAGGAGGGGAGGGGAAGGGGATGGGAGGTGGACGAGACGATGGGCCTC
GGCCGTCTAGGTATCTCGTTTCGCGTGGCGTGTGCGCCTGTGTGTTTTTTCCCTTATAAG
CTGGGATTGTTTTGGCTGCCTGGGTGGATATATCCTATCCCGCATCCGGGGCCCGGGCCG
CCCCACTATATTTGGATCTTTCGATCTCGGGTCCCTTTGGATTTGGACTCTCACGTTCGT
ATTTGTGGTTGCTCACGTTTTGTATTTTGAACTCAACTCAACTCCACAAAACGTCAAACA
CGCCGCATTGTTCTTCTCTTTCCCTGCAAATAAACAAATAAGAACACAGTTCTTCTCTTC
AGAAAAAGACCCCAAGTGCATTTGTATTATAAAGTCCCTACGAAGCCATCCTTGTAAAAA
AAGAAGATTGCATTATAAAGCATGTAGATACTCGAAAAACGGTAAGCCCAACCGAATCTA
CATAGATCCATCGGGAACAAAGCCGGTCGGATCCATAAAAATCTGTCCGGAGAGACACCT
CCACCAACACTAAATGCACATATAAAATAGGGATAGGACTGAAAGCACATCATTTCTAAA
CTAGGACAAGTGGACAACATCACCGTCTCACCGCCCCGACCAACACACATGGACTCCCTA
AACGGTTTCTAGAAATGATGTGCACGTTGTTGTGTACCAAATCTGGGTCAAAGTGTGCGT
GGACTCTGAAATAATGTTTCTAAGGATTATACACATGGGATGCGTGAAACACTCATTTTT
TTAGAAATGAGACCCTCTCCATCAATATAATCCTTAGAAACATTATTTCGAATTTTACTC
TTTGGTTGGGTAGATTTAGAGTAGCTCAACACAAGGGTGCCGAAATGCCATGGTTTTTGT
ACCTGCCCTCGTGCACTAGCGCAACTATGTAAACTAGGTAGTGGCAATTTAGGTGGGACC
CCCTCCCCCGCCCGCGGTGATTGTTCAAAAAAGTTGTGTTGACTATCAAGTGTTTTTCTA
GATTCTATCAAGCGGTTGATGGTAAGATGATTTTGCCCTTGGCCATATAGCTTGTGTTGA
AGGGCCTGATAGTCAAAGTTCCCCAAAAAATTGAGTTCATTTAATGAAACTAAAAATATC
AGACTAGATCATAAAATGGCGTGTTACTATTATTCTAACTGTGAACAAAATTTGAGCGAT
AGTTTTAGAGAAAATCAATAGCAATAAAATGATAAAATTTTGGCGATAGGATTTTTATAA
AAAAACTGAAAATCCTATATTAAATTATGAATGGTGTCATTCGGTCGATCGTGGTAGTAG
TTTTAGATGATCCAATTATCATTTTTTATTAAAAATGGCAAAAAATGGAACTTTTAAGAA
AGCATATACTCCCTCCGTTCCATATTATAGCAATAAAATGATCAAATTTTGGCGATAGAA
TTTTTATAAAAAAAAGTCAAAAATCTATATTAAATTATGAATGGTGTCATTCGGTCGATC
GTGGTAGTAGTTTTAGATAATCCAATTATCATTTTCTACTAAAAATGGCAAAAAAATGGA
ACTTTTAAGAAAGCATATATGAAACAACCACCGTGGATCATAAACGCCCTATCATGTTCA
GTACTTCAAGCAAATAAAGTTATCAGGCTTTTATTTCACATGAAAAAGTCAACAAGTTTT
AAATCTATTTTTGGGCAAAACTATAAATTACAGAAAAAAAAAGGAAAAAATGTACATTAT
GAGCAAGAGCAAGCAAACGAGATAGAACCCACGGGAGCTTGCCATTTTGCAAGTGAGCTG
TTATTCTTATTCTAATTTTCTTGTGTGGCTGTAAACGAGATAGATGGGGATGAACTTGCC
GGTTTGCAAACAAACAAGATATGGCCGAGTAAAACTTAATGAAATAAAACTCTAATAAAG
GAGGATATGGCCGAGTAAAACTTAATGAAGTATATTTACTTCACTAAGTTTTGGTTGGTT
TTATTTGATCTTCTAAATTTAATGACGTCAAGTTATTTTTTGGTTGATGCATTTCGTCGA
ACATCTGCCATGGTCTGCAATGCACATCAAAACAATCAATCCCTCGAACCTTAGAGCATC
TCCGACAGCCGCGCTAAAACAGCGCCGCGCTTCAAATTTGACCTTTTTAGCGTGCGCGCA
ATAGCAATAAACGTGTGTGCGGCATATAGATTACAGCGCGCTGTGTATTTGATGTGCCCG
CTTTCGCGCGTCGCACTCTCTCCACCGCGCCACCTTCGCGCCGCCTCGCGCCACCGCCGG
CGAACTGACCCGATGGACGCCCTCGCCGGCACCC